Wall clock time and date at job start Fri Apr 10 2020 14:47:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34227 * 117.00122 * 2 1 4 4 O 1.20827 * 119.99929 * 359.97438 * 3 2 1 5 5 C 1.50702 * 119.99995 * 179.97438 * 3 2 1 6 6 H 1.09002 * 109.46713 * 304.99931 * 5 3 2 7 7 O 1.42902 * 109.47048 * 184.99699 * 5 3 2 8 8 C 1.53004 * 109.47019 * 64.99730 * 5 3 2 9 9 N 1.46505 * 109.46932 * 185.00099 * 8 5 3 10 10 C 1.34779 * 119.99610 * 180.02562 * 9 8 5 11 11 O 1.21547 * 120.00202 * 359.97438 * 10 9 8 12 12 C 1.47866 * 119.99546 * 179.97438 * 10 9 8 13 13 C 1.39670 * 120.10091 * 359.72593 * 12 10 9 14 14 C 1.38038 * 120.03769 * 179.78757 * 13 12 10 15 15 C 1.38181 * 120.24356 * 0.46024 * 14 13 12 16 16 C 1.39182 * 120.19877 * 359.79585 * 15 14 13 17 17 S 1.76205 * 120.01866 * 179.97438 * 16 15 14 18 18 C 1.76203 * 99.99781 * 265.52338 * 17 16 15 19 19 H 1.08005 * 120.00026 * 5.11902 * 18 17 16 20 20 C 1.38726 * 119.99940 * 185.11713 * 18 17 16 21 21 N 1.31628 * 120.00108 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 120.00012 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.46810 * 60.00521 * 22 20 18 24 24 H 1.48503 * 109.47100 * 180.02562 * 22 20 18 25 25 H 1.48496 * 109.47459 * 300.00598 * 22 20 18 26 26 C 1.38873 * 119.95895 * 359.97084 * 16 15 14 27 27 H 1.09003 * 109.47129 * 300.00498 * 1 2 3 28 28 H 1.09007 * 109.46941 * 60.00065 * 1 2 3 29 29 H 1.08993 * 109.47375 * 180.02562 * 1 2 3 30 30 H 0.96695 * 113.99809 * 300.00042 * 7 5 3 31 31 H 1.08997 * 109.47121 * 65.00450 * 8 5 3 32 32 H 1.08994 * 109.46811 * 305.00019 * 8 5 3 33 33 H 0.96998 * 119.99648 * 359.97438 * 9 8 5 34 34 H 1.08005 * 119.98381 * 359.97438 * 13 12 10 35 35 H 1.08001 * 119.88283 * 180.20620 * 14 13 12 36 36 H 1.08001 * 119.89992 * 179.76302 * 15 14 13 37 37 H 0.96992 * 119.99726 * 180.02562 * 21 20 18 38 38 H 1.07999 * 120.11897 * 180.02562 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 0.0006 6 1 3.9597 0.7053 0.8427 7 8 3.9718 2.6401 0.1178 8 6 4.1081 0.6923 -1.3064 9 7 5.5719 0.6590 -1.2565 10 6 6.2712 0.1823 -2.3054 11 8 5.6874 -0.2205 -3.2925 12 6 7.7486 0.1492 -2.2553 13 6 8.4218 0.6167 -1.1243 14 6 9.8009 0.5812 -1.0771 15 6 10.5217 0.0926 -2.1501 16 6 9.8613 -0.3709 -3.2842 17 16 10.7851 -0.9922 -4.6500 18 6 10.8886 0.4637 -5.6370 19 1 10.5050 1.4003 -5.2598 20 6 11.4628 0.4071 -6.8986 21 7 11.9299 -0.7344 -7.3585 22 14 11.5719 1.9505 -7.9453 23 1 12.3739 2.9767 -7.2318 24 1 12.2222 1.6255 -9.2402 25 1 10.2059 2.4761 -8.1961 26 6 8.4739 -0.3434 -3.3387 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3634 -1.0276 0.0005 30 1 3.6567 3.2069 -0.5994 31 1 3.7871 1.3144 -2.1420 32 1 3.7259 -0.3198 -1.4390 33 1 6.0377 0.9808 -0.4689 34 1 7.8629 1.0035 -0.2850 35 1 10.3187 0.9403 -0.2000 36 1 11.6007 0.0709 -2.1087 37 1 12.3317 -0.7738 -8.2404 38 1 7.9589 -0.7029 -4.2173 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345308911.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:47:40 Heat of formation + Delta-G solvation = -146.674320 kcal Electronic energy + Delta-G solvation = -23770.959777 eV Core-core repulsion = 19897.854360 eV Total energy + Delta-G solvation = -3873.105417 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.23456 -40.02296 -38.24737 -37.67431 -36.69237 -34.63572 -32.51187 -31.50869 -30.60483 -30.09980 -27.92079 -25.57543 -25.07548 -23.15994 -22.16839 -21.78752 -20.49239 -18.72841 -18.56306 -17.93230 -17.48459 -16.99462 -16.20394 -16.03645 -16.02764 -15.41033 -14.98915 -14.85088 -14.74348 -14.41310 -14.14429 -13.79315 -13.61152 -13.40539 -13.05407 -12.87700 -12.73196 -12.44270 -12.21848 -11.69777 -11.52508 -11.34521 -11.17634 -11.15113 -11.07631 -10.75958 -10.71513 -10.02618 -9.85133 -9.36215 -9.15871 -9.02953 -8.61906 -8.04835 -6.72148 -6.28946 -4.03169 1.12401 1.49017 1.64665 2.00476 2.92743 2.97726 3.20472 3.23140 3.26406 3.45013 3.63236 3.94428 4.06922 4.18715 4.24618 4.36173 4.62413 4.71037 4.78527 5.05294 5.06198 5.07932 5.15387 5.21403 5.26938 5.46721 5.71227 5.75171 5.85018 5.95502 6.11990 6.23222 6.55040 6.61855 6.76598 6.90902 7.11237 7.16237 7.35762 7.56825 8.17186 8.31929 9.16760 10.77725 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.019442 B = 0.002375 C = 0.002292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.810590 B =11785.812588 C =12213.930075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.353 6.353 3 C 0.438 3.562 4 O -0.495 6.495 5 C 0.110 3.890 6 H 0.147 0.853 7 O -0.527 6.527 8 C 0.096 3.904 9 N -0.727 5.727 10 C 0.567 3.433 11 O -0.532 6.532 12 C -0.155 4.155 13 C -0.088 4.088 14 C -0.141 4.141 15 C -0.054 4.054 16 C -0.107 4.107 17 S -0.034 6.034 18 C -0.520 4.520 19 H 0.075 0.925 20 C 0.073 3.927 21 N -0.870 5.870 22 Si 0.921 3.079 23 H -0.273 1.273 24 H -0.282 1.282 25 H -0.273 1.273 26 C -0.018 4.018 27 H 0.064 0.936 28 H 0.065 0.935 29 H 0.105 0.895 30 H 0.391 0.609 31 H 0.079 0.921 32 H 0.093 0.907 33 H 0.405 0.595 34 H 0.118 0.882 35 H 0.124 0.876 36 H 0.132 0.868 37 H 0.270 0.730 38 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.008 2.574 17.922 24.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.269 6.269 3 C 0.279 3.721 4 O -0.381 6.381 5 C 0.049 3.951 6 H 0.165 0.835 7 O -0.333 6.333 8 C -0.029 4.029 9 N -0.382 5.382 10 C 0.356 3.644 11 O -0.409 6.409 12 C -0.160 4.160 13 C -0.107 4.107 14 C -0.161 4.161 15 C -0.075 4.075 16 C -0.218 4.218 17 S 0.200 5.800 18 C -0.668 4.668 19 H 0.093 0.907 20 C -0.136 4.136 21 N -0.505 5.505 22 Si 0.747 3.253 23 H -0.198 1.198 24 H -0.207 1.207 25 H -0.198 1.198 26 C -0.039 4.039 27 H 0.083 0.917 28 H 0.084 0.916 29 H 0.124 0.876 30 H 0.241 0.759 31 H 0.097 0.903 32 H 0.111 0.889 33 H 0.242 0.758 34 H 0.136 0.864 35 H 0.142 0.858 36 H 0.150 0.850 37 H 0.080 0.920 38 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -16.856 1.190 17.318 24.196 hybrid contribution -0.839 2.610 -0.451 2.778 sum -17.694 3.800 16.866 24.739 Atomic orbital electron populations 1.23357 0.75620 1.04206 1.02766 1.86530 1.24044 1.32818 1.83534 1.24525 0.92742 0.82034 0.72820 1.90717 1.66625 1.36368 1.44406 1.21742 0.86123 0.86059 1.01186 0.83535 1.86668 1.75706 1.17409 1.53562 1.21842 0.81946 1.03303 0.95793 1.45695 1.05662 1.66613 1.20271 1.18420 0.87429 0.76527 0.82071 1.90790 1.71276 1.46890 1.31903 1.19784 0.91554 1.07437 0.97244 1.21150 0.94858 0.98375 0.96359 1.21069 0.93720 1.02136 0.99144 1.21982 1.00468 0.92994 0.92038 1.22860 0.96197 1.01641 1.01093 1.83613 1.65728 1.18123 1.12519 1.22794 1.46204 0.94555 1.03217 0.90663 1.25002 0.94634 0.97360 0.96573 1.69976 1.37135 1.24740 1.18695 0.86177 0.78688 0.81605 0.78850 1.19814 1.20733 1.19801 1.21951 0.93221 0.92289 0.96475 0.91692 0.91579 0.87623 0.75871 0.90300 0.88857 0.75831 0.86374 0.85785 0.85035 0.91990 0.84294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 10.56 101.05 1.07 1.25 16 2 O -0.35 -2.70 10.53 -39.25 -0.41 -3.11 16 3 C 0.44 3.67 7.27 36.01 0.26 3.93 16 4 O -0.49 -5.44 16.07 -25.46 -0.41 -5.85 16 5 C 0.11 0.74 3.52 -27.88 -0.10 0.64 16 6 H 0.15 0.69 8.14 -51.93 -0.42 0.26 16 7 O -0.53 -3.95 12.94 -55.13 -0.71 -4.66 16 8 C 0.10 0.82 5.29 -4.04 -0.02 0.80 16 9 N -0.73 -7.44 5.45 -61.24 -0.33 -7.77 16 10 C 0.57 8.59 7.77 -12.32 -0.10 8.49 16 11 O -0.53 -10.04 16.34 5.32 0.09 -9.96 16 12 C -0.16 -2.51 5.87 -105.00 -0.62 -3.12 16 13 C -0.09 -1.15 9.54 -39.12 -0.37 -1.53 16 14 C -0.14 -1.95 10.02 -39.68 -0.40 -2.34 16 15 C -0.05 -0.94 9.79 -39.25 -0.38 -1.32 16 16 C -0.11 -2.25 5.45 -39.00 -0.21 -2.46 16 17 S -0.03 -0.88 21.41 -107.50 -2.30 -3.18 16 18 C -0.52 -14.59 9.46 30.91 0.29 -14.30 16 19 H 0.08 2.09 7.79 -52.48 -0.41 1.68 16 20 C 0.07 2.05 5.49 -17.46 -0.10 1.96 16 21 N -0.87 -25.36 13.22 55.49 0.73 -24.62 16 22 Si 0.92 21.39 29.55 -169.99 -5.02 16.36 16 23 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 24 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 25 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 26 C -0.02 -0.35 9.34 -38.92 -0.36 -0.71 16 27 H 0.06 0.33 8.13 -51.93 -0.42 -0.09 16 28 H 0.07 0.36 8.13 -51.92 -0.42 -0.06 16 29 H 0.11 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.39 2.25 8.79 45.56 0.40 2.65 16 31 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.09 0.83 8.11 -51.93 -0.42 0.40 16 33 H 0.41 3.19 6.50 -40.82 -0.27 2.92 16 34 H 0.12 1.06 6.40 -52.48 -0.34 0.72 16 35 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 36 H 0.13 2.19 8.06 -52.49 -0.42 1.77 16 37 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 38 H 0.14 3.00 7.65 -52.49 -0.40 2.60 16 LS Contribution 356.59 15.07 5.37 5.37 Total: -1.00 -35.29 356.59 -7.56 -42.85 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: -3.53 Total: 3.30 kcal Atomic # 6 Polarization: -7.69 SS G_CDS: -1.04 Total: -8.73 kcal Atomic # 7 Polarization: -32.79 SS G_CDS: 0.40 Total: -32.39 kcal Atomic # 8 Polarization: -22.14 SS G_CDS: -1.45 Total: -23.59 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: -0.88 SS G_CDS: -2.30 Total: -3.18 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -35.29 -7.56 -42.85 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345308911.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.824 kcal (2) G-P(sol) polarization free energy of solvation -35.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds