Wall clock time and date at job start Fri Apr 10 2020 14:47:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34227 * 117.00122 * 2 1 4 4 O 1.20827 * 119.99929 * 359.97438 * 3 2 1 5 5 C 1.50702 * 119.99995 * 179.97438 * 3 2 1 6 6 H 1.09002 * 109.46713 * 304.99931 * 5 3 2 7 7 O 1.42902 * 109.47048 * 184.99699 * 5 3 2 8 8 C 1.53004 * 109.47019 * 64.99730 * 5 3 2 9 9 N 1.46505 * 109.46932 * 185.00099 * 8 5 3 10 10 C 1.34779 * 119.99610 * 180.02562 * 9 8 5 11 11 O 1.21547 * 120.00202 * 359.97438 * 10 9 8 12 12 C 1.47866 * 119.99546 * 179.97438 * 10 9 8 13 13 C 1.39670 * 120.10091 * 359.72593 * 12 10 9 14 14 C 1.38038 * 120.03769 * 179.78757 * 13 12 10 15 15 C 1.38181 * 120.24356 * 0.46024 * 14 13 12 16 16 C 1.39182 * 120.19877 * 359.79585 * 15 14 13 17 17 S 1.76205 * 120.01866 * 179.97438 * 16 15 14 18 18 C 1.76203 * 99.99781 * 265.52338 * 17 16 15 19 19 H 1.08005 * 120.00026 * 5.11902 * 18 17 16 20 20 C 1.38726 * 119.99940 * 185.11713 * 18 17 16 21 21 N 1.31628 * 120.00108 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 120.00012 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.46810 * 60.00521 * 22 20 18 24 24 H 1.48503 * 109.47100 * 180.02562 * 22 20 18 25 25 H 1.48496 * 109.47459 * 300.00598 * 22 20 18 26 26 C 1.38873 * 119.95895 * 359.97084 * 16 15 14 27 27 H 1.09003 * 109.47129 * 300.00498 * 1 2 3 28 28 H 1.09007 * 109.46941 * 60.00065 * 1 2 3 29 29 H 1.08993 * 109.47375 * 180.02562 * 1 2 3 30 30 H 0.96695 * 113.99809 * 300.00042 * 7 5 3 31 31 H 1.08997 * 109.47121 * 65.00450 * 8 5 3 32 32 H 1.08994 * 109.46811 * 305.00019 * 8 5 3 33 33 H 0.96998 * 119.99648 * 359.97438 * 9 8 5 34 34 H 1.08005 * 119.98381 * 359.97438 * 13 12 10 35 35 H 1.08001 * 119.88283 * 180.20620 * 14 13 12 36 36 H 1.08001 * 119.89992 * 179.76302 * 15 14 13 37 37 H 0.96992 * 119.99726 * 180.02562 * 21 20 18 38 38 H 1.07999 * 120.11897 * 180.02562 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 0.0006 6 1 3.9597 0.7053 0.8427 7 8 3.9718 2.6401 0.1178 8 6 4.1081 0.6923 -1.3064 9 7 5.5719 0.6590 -1.2565 10 6 6.2712 0.1823 -2.3054 11 8 5.6874 -0.2205 -3.2925 12 6 7.7486 0.1492 -2.2553 13 6 8.4218 0.6167 -1.1243 14 6 9.8009 0.5812 -1.0771 15 6 10.5217 0.0926 -2.1501 16 6 9.8613 -0.3709 -3.2842 17 16 10.7851 -0.9922 -4.6500 18 6 10.8886 0.4637 -5.6370 19 1 10.5050 1.4003 -5.2598 20 6 11.4628 0.4071 -6.8986 21 7 11.9299 -0.7344 -7.3585 22 14 11.5719 1.9505 -7.9453 23 1 12.3739 2.9767 -7.2318 24 1 12.2222 1.6255 -9.2402 25 1 10.2059 2.4761 -8.1961 26 6 8.4739 -0.3434 -3.3387 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3634 -1.0276 0.0005 30 1 3.6567 3.2069 -0.5994 31 1 3.7871 1.3144 -2.1420 32 1 3.7259 -0.3198 -1.4390 33 1 6.0377 0.9808 -0.4689 34 1 7.8629 1.0035 -0.2850 35 1 10.3187 0.9403 -0.2000 36 1 11.6007 0.0709 -2.1087 37 1 12.3317 -0.7738 -8.2404 38 1 7.9589 -0.7029 -4.2173 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345308911.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:47:40 Heat of formation + Delta-G solvation = -173.151079 kcal Electronic energy + Delta-G solvation = -23772.107895 eV Core-core repulsion = 19897.854360 eV Total energy + Delta-G solvation = -3874.253535 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.89552 -41.17401 -39.27824 -38.53630 -37.40040 -35.58509 -34.64648 -32.61677 -31.90902 -30.97309 -28.47907 -27.73527 -25.93251 -24.28825 -23.45220 -22.42784 -21.61918 -20.06646 -19.32248 -19.19170 -18.52684 -17.72680 -17.32738 -16.92790 -16.90675 -16.79933 -16.63151 -16.11703 -15.70251 -15.61392 -15.15393 -14.81537 -14.66444 -14.56440 -14.30644 -13.95408 -13.59856 -13.27146 -13.22331 -13.07401 -12.95862 -12.93278 -12.64668 -12.38120 -12.14769 -11.89731 -11.75174 -11.48139 -11.23185 -11.10155 -10.73536 -10.36754 -9.89621 -9.68113 -8.79649 -8.38533 -6.18473 -0.16904 0.27998 0.84060 1.29899 1.39033 1.43309 1.45576 1.66001 1.79191 2.06244 2.25251 2.81888 2.94347 3.07160 3.31339 3.42706 3.58763 3.73691 3.83781 3.97003 4.06769 4.24515 4.29442 4.37672 4.48961 4.51148 4.56355 4.69295 4.71813 4.94952 5.15649 5.21228 5.23882 5.35186 5.39202 5.53141 5.88574 6.16113 6.26625 6.39674 6.53537 7.01665 7.08815 8.68227 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.019442 B = 0.002375 C = 0.002292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.810590 B =11785.812588 C =12213.930075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.357 6.357 3 C 0.440 3.560 4 O -0.525 6.525 5 C 0.126 3.874 6 H 0.176 0.824 7 O -0.533 6.533 8 C 0.096 3.904 9 N -0.700 5.700 10 C 0.566 3.434 11 O -0.579 6.579 12 C -0.157 4.157 13 C -0.060 4.060 14 C -0.121 4.121 15 C -0.062 4.062 16 C -0.130 4.130 17 S -0.096 6.096 18 C -0.536 4.536 19 H 0.067 0.933 20 C 0.019 3.981 21 N -0.906 5.906 22 Si 0.991 3.009 23 H -0.261 1.261 24 H -0.272 1.272 25 H -0.271 1.271 26 C -0.044 4.044 27 H 0.066 0.934 28 H 0.061 0.939 29 H 0.131 0.869 30 H 0.397 0.603 31 H 0.071 0.929 32 H 0.093 0.907 33 H 0.421 0.579 34 H 0.176 0.824 35 H 0.175 0.825 36 H 0.134 0.866 37 H 0.274 0.726 38 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.792 4.517 21.195 28.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.273 6.273 3 C 0.282 3.718 4 O -0.414 6.414 5 C 0.064 3.936 6 H 0.193 0.807 7 O -0.341 6.341 8 C -0.028 4.028 9 N -0.354 5.354 10 C 0.355 3.645 11 O -0.460 6.460 12 C -0.162 4.162 13 C -0.079 4.079 14 C -0.141 4.141 15 C -0.083 4.083 16 C -0.242 4.242 17 S 0.138 5.862 18 C -0.683 4.683 19 H 0.086 0.914 20 C -0.186 4.186 21 N -0.542 5.542 22 Si 0.813 3.187 23 H -0.185 1.185 24 H -0.196 1.196 25 H -0.196 1.196 26 C -0.066 4.066 27 H 0.085 0.915 28 H 0.080 0.920 29 H 0.149 0.851 30 H 0.249 0.751 31 H 0.090 0.910 32 H 0.111 0.889 33 H 0.261 0.739 34 H 0.194 0.806 35 H 0.193 0.807 36 H 0.152 0.848 37 H 0.083 0.917 38 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -17.646 3.139 20.649 27.343 hybrid contribution -0.737 1.989 -1.274 2.475 sum -18.383 5.128 19.375 27.196 Atomic orbital electron populations 1.23599 0.74489 1.05909 1.02683 1.86528 1.25255 1.32429 1.83106 1.24827 0.93335 0.81753 0.71854 1.90709 1.67399 1.37323 1.45944 1.21730 0.84954 0.86008 1.00868 0.80674 1.86651 1.75695 1.17695 1.54055 1.21910 0.80594 1.03453 0.96889 1.45419 1.06363 1.64461 1.19186 1.18321 0.87139 0.76574 0.82494 1.90778 1.71911 1.49252 1.34033 1.19899 0.92292 1.06890 0.97081 1.21741 0.94939 0.95082 0.96098 1.21561 0.93992 0.99549 0.98959 1.22083 1.00997 0.93232 0.92024 1.22493 0.96128 1.05132 1.00405 1.83492 1.67519 1.19421 1.15732 1.23032 1.46234 0.94945 1.04085 0.91431 1.26007 0.94022 1.00803 0.97797 1.70102 1.37984 1.26947 1.19205 0.85110 0.78817 0.77531 0.77259 1.18504 1.19614 1.19567 1.21627 0.93031 0.94704 0.97254 0.91497 0.91998 0.85111 0.75118 0.91041 0.88890 0.73897 0.80643 0.80717 0.84830 0.91714 0.87939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.56 113.37 1.20 1.44 16 2 O -0.36 -4.78 10.53 -51.39 -0.54 -5.32 16 3 C 0.44 6.49 7.27 71.24 0.52 7.01 16 4 O -0.52 -10.85 16.07 28.38 0.46 -10.39 16 5 C 0.13 1.27 3.52 29.85 0.11 1.38 16 6 H 0.18 0.80 8.14 -2.39 -0.02 0.78 16 7 O -0.53 -6.19 12.94 -129.95 -1.68 -7.88 16 8 C 0.10 1.41 5.29 86.38 0.46 1.86 16 9 N -0.70 -11.96 5.45 -465.95 -2.54 -14.50 16 10 C 0.57 16.38 7.77 86.79 0.67 17.06 16 11 O -0.58 -22.32 16.34 -3.86 -0.06 -22.38 16 12 C -0.16 -4.82 5.87 -20.11 -0.12 -4.93 16 13 C -0.06 -1.27 9.54 22.57 0.22 -1.06 16 14 C -0.12 -2.78 10.02 22.21 0.22 -2.56 16 15 C -0.06 -2.11 9.79 22.48 0.22 -1.89 16 16 C -0.13 -5.67 5.45 22.65 0.12 -5.54 16 17 S -0.10 -5.25 21.41 -56.49 -1.21 -6.46 16 18 C -0.54 -31.41 9.46 67.94 0.64 -30.77 16 19 H 0.07 3.91 7.79 -2.91 -0.02 3.88 16 20 C 0.02 1.09 5.49 84.84 0.47 1.56 16 21 N -0.91 -54.75 13.22 21.64 0.29 -54.47 16 22 Si 0.99 44.65 29.55 68.60 2.03 46.67 16 23 H -0.26 -11.12 7.11 99.48 0.71 -10.42 16 24 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 25 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 26 C -0.04 -1.83 9.34 22.70 0.21 -1.62 16 27 H 0.07 0.60 8.13 -2.39 -0.02 0.58 16 28 H 0.06 0.63 8.13 -2.38 -0.02 0.61 16 29 H 0.13 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.40 3.60 8.79 -74.06 -0.65 2.94 16 31 H 0.07 1.21 8.14 -2.39 -0.02 1.20 16 32 H 0.09 1.46 8.11 -2.39 -0.02 1.44 16 33 H 0.42 4.32 6.50 -92.71 -0.60 3.72 16 34 H 0.18 1.74 6.40 -2.91 -0.02 1.73 16 35 H 0.18 2.38 8.06 -2.91 -0.02 2.36 16 36 H 0.13 4.37 8.06 -2.91 -0.02 4.34 16 37 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 38 H 0.10 4.88 7.65 -2.91 -0.02 4.86 16 Total: -1.00 -83.45 356.59 1.54 -81.91 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: -0.13 Total: 10.87 kcal Atomic # 6 Polarization: -23.00 SS G_CDS: 4.94 Total: -18.06 kcal Atomic # 7 Polarization: -66.71 SS G_CDS: -2.26 Total: -68.97 kcal Atomic # 8 Polarization: -44.14 SS G_CDS: -1.83 Total: -45.97 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.67 kcal Atomic # 16 Polarization: -5.25 SS G_CDS: -1.21 Total: -6.46 kcal Total: -83.45 1.54 -81.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345308911.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.238 kcal (2) G-P(sol) polarization free energy of solvation -83.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds