Wall clock time and date at job start Fri Apr 10 2020 14:48:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 O 1.42096 * 109.47285 * 2 1 4 4 C 1.76203 * 102.99681 * 109.05887 * 2 1 3 5 5 C 1.38387 * 119.92533 * 89.99947 * 4 2 1 6 6 C 1.38351 * 120.30372 * 179.72142 * 5 4 2 7 7 C 1.37967 * 120.14602 * 0.25214 * 6 5 4 8 8 C 1.39613 * 119.84959 * 0.02562 * 7 6 5 9 9 C 1.47726 * 120.14798 * 179.97438 * 8 7 6 10 10 O 1.21476 * 119.99910 * 179.97438 * 9 8 7 11 11 O 1.34710 * 120.00336 * 0.02562 * 9 8 7 12 12 C 1.45198 * 117.00382 * 179.97438 * 11 9 8 13 13 C 1.50703 * 109.47256 * 179.97438 * 12 11 9 14 14 O 1.21279 * 120.00119 * 0.02562 * 13 12 11 15 15 N 1.34775 * 119.99775 * 179.97438 * 13 12 11 16 16 C 1.46500 * 119.99720 * 179.97438 * 15 13 12 17 17 C 1.50700 * 109.46909 * 180.02562 * 16 15 13 18 18 H 1.08001 * 120.00330 * 0.02562 * 17 16 15 19 19 C 1.37878 * 119.99886 * 180.02562 * 17 16 15 20 20 N 1.31509 * 120.00106 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99844 * 180.02562 * 19 17 16 22 22 H 1.48493 * 109.47298 * 0.02562 * 21 19 17 23 23 H 1.48506 * 109.47167 * 120.00259 * 21 19 17 24 24 H 1.48502 * 109.47065 * 240.00086 * 21 19 17 25 25 C 1.37921 * 119.92490 * 270.27508 * 4 2 1 26 26 H 1.08996 * 109.47302 * 310.94262 * 1 2 3 27 27 H 1.08999 * 109.46828 * 70.94525 * 1 2 3 28 28 H 1.08998 * 109.47165 * 190.93979 * 1 2 3 29 29 H 1.08002 * 119.85220 * 0.02562 * 5 4 2 30 30 H 1.07998 * 119.92834 * 180.28046 * 6 5 4 31 31 H 1.07997 * 120.07396 * 179.97438 * 7 6 5 32 32 H 1.08994 * 109.46872 * 299.99805 * 12 11 9 33 33 H 1.08998 * 109.47176 * 59.99772 * 12 11 9 34 34 H 0.97000 * 119.99820 * 0.02562 * 15 13 12 35 35 H 1.08994 * 109.47412 * 300.00357 * 16 15 13 36 36 H 1.08998 * 109.46878 * 60.00472 * 16 15 13 37 37 H 0.97005 * 120.00415 * 179.97438 * 20 19 17 38 38 H 1.08003 * 120.07489 * 359.97438 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2877 1.3397 0.0000 4 6 2.2103 -0.5606 1.6228 5 6 2.3655 -1.9139 1.8670 6 6 2.6823 -2.3623 3.1369 7 6 2.8405 -1.4619 4.1702 8 6 2.6796 -0.0957 3.9321 9 6 2.8469 0.8741 5.0338 10 8 2.7068 2.0623 4.8236 11 8 3.1559 0.4410 6.2714 12 6 3.3055 1.4500 7.3048 13 6 3.6478 0.7832 8.6122 14 8 3.7555 -0.4235 8.6675 15 7 3.8351 1.5280 9.7197 16 6 4.1673 0.8797 10.9908 17 6 4.3227 1.9270 12.0632 18 1 4.1871 2.9710 11.8222 19 6 4.6379 1.5524 13.3521 20 7 4.8035 0.2812 13.6455 21 14 4.8298 2.8505 14.6816 22 1 4.5935 4.1953 14.0981 23 1 3.8437 2.6005 15.7635 24 1 6.2043 2.7873 15.2404 25 6 2.3594 0.3498 2.6480 26 1 -0.3634 0.6734 0.7762 27 1 -0.3633 0.3355 -0.9714 28 1 -0.3633 -1.0090 0.1950 29 1 2.2437 -2.6230 1.0615 30 1 2.8065 -3.4194 3.3196 31 1 3.0874 -1.8133 5.1611 32 1 4.1039 2.1383 7.0276 33 1 2.3714 2.0014 7.4121 34 1 3.7493 2.4932 9.6753 35 1 3.3682 0.1923 11.2678 36 1 5.1009 0.3274 10.8838 37 1 5.0257 0.0175 14.5522 38 1 2.2340 1.4054 2.4569 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000770596673.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:48:08 Heat of formation + Delta-G solvation = -131.484518 kcal Electronic energy + Delta-G solvation = -23503.599417 eV Core-core repulsion = 19631.152679 eV Total energy + Delta-G solvation = -3872.446738 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.79252 -39.26739 -38.55582 -36.39789 -36.15496 -34.28700 -32.45203 -32.03828 -31.52198 -29.28203 -29.16634 -26.79499 -24.63706 -23.32801 -22.58663 -21.26882 -19.98852 -18.99122 -17.59387 -17.52658 -17.11671 -16.67758 -16.24034 -15.78083 -15.61939 -15.30939 -15.20917 -15.07737 -14.69071 -14.45550 -14.19957 -13.96237 -13.40188 -13.22506 -13.10135 -12.79342 -12.62908 -12.50334 -12.26402 -12.03479 -11.81145 -11.77079 -11.01451 -10.96629 -10.84414 -10.76343 -10.64199 -10.36957 -9.73626 -9.49487 -9.45029 -9.23268 -8.87506 -8.81503 -8.02745 -6.22224 -4.29586 0.21894 0.60658 1.39513 2.10130 2.26917 2.38135 3.12531 3.20835 3.26806 3.28163 3.31282 3.48876 3.89582 4.29601 4.41065 4.42420 4.65616 4.72829 4.75882 4.81808 4.99907 5.04297 5.13990 5.19404 5.22851 5.29941 5.41363 5.52103 5.66262 5.84559 5.88010 6.20669 6.33482 7.18870 7.26577 7.42422 7.53376 7.60792 7.88966 8.46031 8.67779 8.92191 9.36915 10.87935 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.036909 B = 0.001898 C = 0.001828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.436977 B =14751.036331 C =15313.571137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.500 4.500 2 S 1.338 4.662 3 O -0.851 6.851 4 C -0.479 4.479 5 C -0.012 4.012 6 C -0.148 4.148 7 C -0.024 4.024 8 C -0.135 4.135 9 C 0.506 3.494 10 O -0.505 6.505 11 O -0.324 6.324 12 C 0.049 3.951 13 C 0.501 3.499 14 O -0.535 6.535 15 N -0.706 5.706 16 C 0.251 3.749 17 C -0.545 4.545 18 H 0.065 0.935 19 C 0.064 3.936 20 N -0.884 5.884 21 Si 0.906 3.094 22 H -0.272 1.272 23 H -0.282 1.282 24 H -0.281 1.281 25 C 0.010 3.990 26 H 0.083 0.917 27 H 0.106 0.894 28 H 0.112 0.888 29 H 0.144 0.856 30 H 0.141 0.859 31 H 0.150 0.850 32 H 0.099 0.901 33 H 0.098 0.902 34 H 0.393 0.607 35 H 0.030 0.970 36 H 0.030 0.970 37 H 0.266 0.734 38 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.535 -6.721 -30.022 31.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.657 4.657 2 S 1.534 4.466 3 O -0.847 6.847 4 C -0.575 4.575 5 C -0.031 4.031 6 C -0.166 4.166 7 C -0.042 4.042 8 C -0.138 4.138 9 C 0.350 3.650 10 O -0.394 6.394 11 O -0.239 6.239 12 C -0.029 4.029 13 C 0.284 3.716 14 O -0.412 6.412 15 N -0.356 5.356 16 C 0.131 3.869 17 C -0.584 4.584 18 H 0.083 0.917 19 C -0.140 4.140 20 N -0.522 5.522 21 Si 0.733 3.267 22 H -0.196 1.196 23 H -0.208 1.208 24 H -0.207 1.207 25 C -0.009 4.009 26 H 0.102 0.898 27 H 0.125 0.875 28 H 0.131 0.869 29 H 0.162 0.838 30 H 0.159 0.841 31 H 0.167 0.833 32 H 0.117 0.883 33 H 0.116 0.884 34 H 0.226 0.774 35 H 0.048 0.952 36 H 0.048 0.952 37 H 0.076 0.924 38 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -6.831 -7.088 -30.533 32.081 hybrid contribution -0.810 2.564 2.714 3.821 sum -7.641 -4.524 -27.819 29.202 Atomic orbital electron populations 1.27783 1.22272 1.08119 1.07522 1.69486 0.86123 0.99843 0.91144 1.93157 1.73144 1.37141 1.81247 1.27749 1.13805 0.99576 1.16369 1.21143 0.91254 0.93456 0.97265 1.21361 1.01924 1.00543 0.92817 1.21893 0.89987 0.91547 1.00744 1.19221 1.09225 0.93162 0.92164 1.21191 0.73470 0.87649 0.82660 1.90854 1.47088 1.17652 1.83837 1.86577 1.80175 1.39620 1.17503 1.22915 1.04124 0.89964 0.85849 1.19842 0.79191 0.87988 0.84603 1.90698 1.51131 1.13900 1.85514 1.46370 1.69022 1.10337 1.09851 1.19189 0.96692 0.93731 0.77306 1.21248 1.50210 0.93236 0.93661 0.91691 1.24957 0.94724 0.95724 0.98621 1.69979 1.46507 1.15216 1.20471 0.86327 0.77879 0.81240 0.81271 1.19601 1.20756 1.20739 1.21239 0.89020 1.00643 0.90029 0.89793 0.87489 0.86926 0.83806 0.84135 0.83275 0.88317 0.88374 0.77366 0.95231 0.95205 0.92407 0.84009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.50 -2.21 10.70 101.05 1.08 -1.13 16 2 S 1.34 7.03 14.18 -107.50 -1.52 5.51 16 3 O -0.85 -10.81 16.90 -35.23 -0.60 -11.40 16 4 C -0.48 -3.74 5.60 -39.64 -0.22 -3.96 16 5 C -0.01 -0.06 9.74 -39.48 -0.38 -0.45 16 6 C -0.15 -1.01 10.03 -39.64 -0.40 -1.41 16 7 C -0.02 -0.24 9.62 -39.17 -0.38 -0.62 16 8 C -0.14 -1.73 5.87 -104.98 -0.62 -2.35 16 9 C 0.51 7.84 7.90 34.61 0.27 8.11 16 10 O -0.50 -8.78 16.14 -19.25 -0.31 -9.09 16 11 O -0.32 -5.34 9.01 -47.20 -0.43 -5.76 16 12 C 0.05 0.77 5.95 36.01 0.21 0.99 16 13 C 0.50 10.10 7.91 -10.98 -0.09 10.02 16 14 O -0.53 -12.95 16.50 -14.10 -0.23 -13.19 16 15 N -0.71 -14.69 5.55 -61.47 -0.34 -15.04 16 16 C 0.25 6.57 5.43 -5.19 -0.03 6.54 16 17 C -0.55 -14.66 9.28 -34.44 -0.32 -14.97 16 18 H 0.06 1.63 7.60 -52.49 -0.40 1.24 16 19 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 20 N -0.88 -25.81 13.29 55.43 0.74 -25.07 16 21 Si 0.91 20.75 29.54 -169.99 -5.02 15.73 16 22 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 23 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 24 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 25 C 0.01 0.12 8.99 -39.17 -0.35 -0.23 16 26 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.11 0.35 8.14 -51.92 -0.42 -0.07 16 28 H 0.11 0.22 8.14 -51.93 -0.42 -0.21 16 29 H 0.14 0.01 8.06 -52.49 -0.42 -0.41 16 30 H 0.14 0.58 8.06 -52.49 -0.42 0.16 16 31 H 0.15 1.59 7.61 -52.49 -0.40 1.19 16 32 H 0.10 1.38 8.14 -51.93 -0.42 0.96 16 33 H 0.10 1.36 8.14 -51.93 -0.42 0.94 16 34 H 0.39 6.92 8.32 -40.82 -0.34 6.58 16 35 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 38 H 0.14 1.99 7.05 -52.48 -0.37 1.62 16 LS Contribution 356.88 15.07 5.38 5.38 Total: -1.00 -40.36 356.88 -8.10 -48.46 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -4.45 Total: 2.28 kcal Atomic # 6 Polarization: 3.51 SS G_CDS: -1.31 Total: 2.20 kcal Atomic # 7 Polarization: -40.50 SS G_CDS: 0.40 Total: -40.11 kcal Atomic # 8 Polarization: -37.88 SS G_CDS: -1.56 Total: -39.45 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Atomic # 16 Polarization: 7.03 SS G_CDS: -1.52 Total: 5.51 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -40.36 -8.10 -48.46 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000770596673.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.026 kcal (2) G-P(sol) polarization free energy of solvation -40.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds