Wall clock time and date at job start Fri Apr 10 2020 14:48:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 O 1.42096 * 109.47285 * 2 1 4 4 C 1.76203 * 102.99681 * 109.05887 * 2 1 3 5 5 C 1.38387 * 119.92533 * 89.99947 * 4 2 1 6 6 C 1.38351 * 120.30372 * 179.72142 * 5 4 2 7 7 C 1.37967 * 120.14602 * 0.25214 * 6 5 4 8 8 C 1.39613 * 119.84959 * 0.02562 * 7 6 5 9 9 C 1.47726 * 120.14798 * 179.97438 * 8 7 6 10 10 O 1.21476 * 119.99910 * 179.97438 * 9 8 7 11 11 O 1.34710 * 120.00336 * 0.02562 * 9 8 7 12 12 C 1.45198 * 117.00382 * 179.97438 * 11 9 8 13 13 C 1.50703 * 109.47256 * 179.97438 * 12 11 9 14 14 O 1.21279 * 120.00119 * 0.02562 * 13 12 11 15 15 N 1.34775 * 119.99775 * 179.97438 * 13 12 11 16 16 C 1.46500 * 119.99720 * 179.97438 * 15 13 12 17 17 C 1.50700 * 109.46909 * 180.02562 * 16 15 13 18 18 H 1.08001 * 120.00330 * 0.02562 * 17 16 15 19 19 C 1.37878 * 119.99886 * 180.02562 * 17 16 15 20 20 N 1.31509 * 120.00106 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99844 * 180.02562 * 19 17 16 22 22 H 1.48493 * 109.47298 * 0.02562 * 21 19 17 23 23 H 1.48506 * 109.47167 * 120.00259 * 21 19 17 24 24 H 1.48502 * 109.47065 * 240.00086 * 21 19 17 25 25 C 1.37921 * 119.92490 * 270.27508 * 4 2 1 26 26 H 1.08996 * 109.47302 * 310.94262 * 1 2 3 27 27 H 1.08999 * 109.46828 * 70.94525 * 1 2 3 28 28 H 1.08998 * 109.47165 * 190.93979 * 1 2 3 29 29 H 1.08002 * 119.85220 * 0.02562 * 5 4 2 30 30 H 1.07998 * 119.92834 * 180.28046 * 6 5 4 31 31 H 1.07997 * 120.07396 * 179.97438 * 7 6 5 32 32 H 1.08994 * 109.46872 * 299.99805 * 12 11 9 33 33 H 1.08998 * 109.47176 * 59.99772 * 12 11 9 34 34 H 0.97000 * 119.99820 * 0.02562 * 15 13 12 35 35 H 1.08994 * 109.47412 * 300.00357 * 16 15 13 36 36 H 1.08998 * 109.46878 * 60.00472 * 16 15 13 37 37 H 0.97005 * 120.00415 * 179.97438 * 20 19 17 38 38 H 1.08003 * 120.07489 * 359.97438 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2877 1.3397 0.0000 4 6 2.2103 -0.5606 1.6228 5 6 2.3655 -1.9139 1.8670 6 6 2.6823 -2.3623 3.1369 7 6 2.8405 -1.4619 4.1702 8 6 2.6796 -0.0957 3.9321 9 6 2.8469 0.8741 5.0338 10 8 2.7068 2.0623 4.8236 11 8 3.1559 0.4410 6.2714 12 6 3.3055 1.4500 7.3048 13 6 3.6478 0.7832 8.6122 14 8 3.7555 -0.4235 8.6675 15 7 3.8351 1.5280 9.7197 16 6 4.1673 0.8797 10.9908 17 6 4.3227 1.9270 12.0632 18 1 4.1871 2.9710 11.8222 19 6 4.6379 1.5524 13.3521 20 7 4.8035 0.2812 13.6455 21 14 4.8298 2.8505 14.6816 22 1 4.5935 4.1953 14.0981 23 1 3.8437 2.6005 15.7635 24 1 6.2043 2.7873 15.2404 25 6 2.3594 0.3498 2.6480 26 1 -0.3634 0.6734 0.7762 27 1 -0.3633 0.3355 -0.9714 28 1 -0.3633 -1.0090 0.1950 29 1 2.2437 -2.6230 1.0615 30 1 2.8065 -3.4194 3.3196 31 1 3.0874 -1.8133 5.1611 32 1 4.1039 2.1383 7.0276 33 1 2.3714 2.0014 7.4121 34 1 3.7493 2.4932 9.6753 35 1 3.3682 0.1923 11.2678 36 1 5.1009 0.3274 10.8838 37 1 5.0257 0.0175 14.5522 38 1 2.2340 1.4054 2.4569 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000770596673.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:48:07 Heat of formation + Delta-G solvation = -162.538478 kcal Electronic energy + Delta-G solvation = -23504.946018 eV Core-core repulsion = 19631.152679 eV Total energy + Delta-G solvation = -3873.793339 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.98285 -40.60239 -39.73230 -37.70441 -36.94471 -36.24307 -34.46790 -32.83782 -32.21415 -30.81806 -29.61302 -28.61688 -25.68061 -24.55589 -23.97616 -22.26813 -21.73651 -19.96633 -19.19274 -18.51715 -18.08106 -17.98444 -17.60888 -17.09422 -16.86849 -16.43751 -16.32285 -16.14954 -15.89335 -15.80006 -15.03747 -14.76263 -14.72255 -14.48926 -14.18210 -13.95075 -13.91597 -13.67791 -13.49070 -13.17915 -12.95425 -12.89955 -12.78411 -12.49524 -12.26143 -12.09173 -11.95472 -11.50812 -11.38816 -11.00320 -10.86633 -10.45064 -10.18996 -9.99503 -9.45115 -8.33126 -6.49710 -0.53935 -0.12163 0.88129 1.05364 1.23930 1.42145 1.42269 1.46017 1.56246 1.75734 2.28648 2.47125 2.54346 2.94827 3.02094 3.40361 3.61505 3.72055 3.90531 3.91952 3.96247 4.14796 4.28113 4.36352 4.49352 4.55602 4.73413 4.91799 5.03649 5.05879 5.14361 5.17566 5.20260 5.26329 5.36081 5.57696 5.73738 5.78048 6.34736 6.58258 6.70267 7.14569 7.28708 8.79166 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.036909 B = 0.001898 C = 0.001828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.436977 B =14751.036331 C =15313.571137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.500 4.500 2 S 1.415 4.585 3 O -0.929 6.929 4 C -0.484 4.484 5 C 0.017 3.983 6 C -0.139 4.139 7 C -0.038 4.038 8 C -0.166 4.166 9 C 0.505 3.495 10 O -0.535 6.535 11 O -0.337 6.337 12 C 0.058 3.942 13 C 0.503 3.497 14 O -0.579 6.579 15 N -0.698 5.698 16 C 0.267 3.733 17 C -0.558 4.558 18 H 0.085 0.915 19 C 0.005 3.995 20 N -0.928 5.928 21 Si 0.986 3.014 22 H -0.255 1.255 23 H -0.278 1.278 24 H -0.278 1.278 25 C -0.016 4.016 26 H 0.055 0.945 27 H 0.123 0.877 28 H 0.150 0.850 29 H 0.213 0.787 30 H 0.178 0.822 31 H 0.137 0.863 32 H 0.122 0.878 33 H 0.123 0.877 34 H 0.412 0.588 35 H -0.006 1.006 36 H -0.006 1.006 37 H 0.270 0.730 38 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.412 -7.618 -32.122 34.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.658 4.658 2 S 1.612 4.388 3 O -0.925 6.925 4 C -0.578 4.578 5 C -0.002 4.002 6 C -0.157 4.157 7 C -0.056 4.056 8 C -0.168 4.168 9 C 0.352 3.648 10 O -0.426 6.426 11 O -0.252 6.252 12 C -0.019 4.019 13 C 0.289 3.711 14 O -0.459 6.459 15 N -0.349 5.349 16 C 0.144 3.856 17 C -0.596 4.596 18 H 0.103 0.897 19 C -0.195 4.195 20 N -0.567 5.567 21 Si 0.809 3.191 22 H -0.178 1.178 23 H -0.204 1.204 24 H -0.204 1.204 25 C -0.035 4.035 26 H 0.074 0.926 27 H 0.141 0.859 28 H 0.168 0.832 29 H 0.230 0.770 30 H 0.196 0.804 31 H 0.155 0.845 32 H 0.140 0.860 33 H 0.141 0.859 34 H 0.248 0.752 35 H 0.012 0.988 36 H 0.012 0.988 37 H 0.079 0.921 38 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -7.701 -7.950 -32.657 34.482 hybrid contribution -0.624 2.688 3.214 4.236 sum -8.325 -5.263 -29.443 31.047 Atomic orbital electron populations 1.27801 1.20614 1.09861 1.07544 1.68486 0.85750 0.96442 0.88101 1.93023 1.76004 1.41165 1.82355 1.28140 1.13142 1.00499 1.16045 1.21935 0.86915 0.92973 0.98339 1.21868 0.99849 1.01656 0.92322 1.21956 0.91007 0.91001 1.01676 1.19201 1.12436 0.93756 0.91453 1.21792 0.72404 0.88019 0.82556 1.90819 1.48818 1.18904 1.84070 1.86575 1.80512 1.40029 1.18109 1.22800 1.06112 0.89463 0.83510 1.20498 0.77544 0.87396 0.85689 1.90673 1.52829 1.16080 1.86367 1.46053 1.69009 1.11262 1.08605 1.18658 0.93725 0.93425 0.79747 1.21634 1.49964 0.94068 0.93939 0.89726 1.26047 0.94023 0.98033 1.01411 1.70128 1.47486 1.17736 1.21323 0.85095 0.77762 0.78626 0.77636 1.17840 1.20389 1.20390 1.21119 0.91380 0.99947 0.91088 0.92560 0.85885 0.83216 0.77016 0.80415 0.84488 0.86008 0.85942 0.75158 0.98757 0.98769 0.92124 0.87501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.50 -2.99 10.70 113.37 1.21 -1.78 16 2 S 1.42 12.02 14.18 -56.49 -0.80 11.22 16 3 O -0.93 -24.14 16.90 -148.98 -2.52 -26.66 16 4 C -0.48 -6.59 5.60 22.23 0.12 -6.46 16 5 C 0.02 0.09 9.74 22.33 0.22 0.31 16 6 C -0.14 -1.39 10.03 22.23 0.22 -1.17 16 7 C -0.04 -0.77 9.62 22.54 0.22 -0.55 16 8 C -0.17 -4.44 5.87 -20.10 -0.12 -4.56 16 9 C 0.51 16.59 7.90 70.33 0.56 17.15 16 10 O -0.53 -19.72 16.14 19.91 0.32 -19.40 16 11 O -0.34 -11.57 9.01 -49.81 -0.45 -12.02 16 12 C 0.06 1.86 5.95 71.24 0.42 2.28 16 13 C 0.50 20.90 7.91 87.66 0.69 21.59 16 14 O -0.58 -29.39 16.50 15.77 0.26 -29.13 16 15 N -0.70 -29.66 5.55 -466.80 -2.59 -32.25 16 16 C 0.27 14.55 5.43 85.63 0.46 15.01 16 17 C -0.56 -30.24 9.28 25.60 0.24 -30.00 16 18 H 0.08 4.15 7.60 -2.91 -0.02 4.13 16 19 C 0.00 0.26 5.46 84.66 0.46 0.73 16 20 N -0.93 -55.54 13.29 21.45 0.28 -55.25 16 21 Si 0.99 42.33 29.54 68.60 2.03 44.36 16 22 H -0.25 -10.18 7.11 99.48 0.71 -9.48 16 23 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 24 H -0.28 -11.74 7.11 99.48 0.71 -11.04 16 25 C -0.02 -0.40 8.99 22.53 0.20 -0.19 16 26 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.12 0.43 8.14 -2.39 -0.02 0.41 16 28 H 0.15 -0.18 8.14 -2.39 -0.02 -0.20 16 29 H 0.21 -1.71 8.06 -2.91 -0.02 -1.73 16 30 H 0.18 0.51 8.06 -2.91 -0.02 0.49 16 31 H 0.14 3.03 7.61 -2.91 -0.02 3.01 16 32 H 0.12 3.37 8.14 -2.39 -0.02 3.35 16 33 H 0.12 3.35 8.14 -2.39 -0.02 3.34 16 34 H 0.41 14.32 8.32 -92.71 -0.77 13.55 16 35 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 36 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 37 H 0.27 15.01 8.31 -92.70 -0.77 14.24 16 38 H 0.11 3.35 7.05 -2.91 -0.02 3.33 16 Total: -1.00 -96.21 356.88 1.78 -94.43 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: 0.33 Total: 12.35 kcal Atomic # 6 Polarization: 7.43 SS G_CDS: 4.92 Total: 12.35 kcal Atomic # 7 Polarization: -85.20 SS G_CDS: -2.30 Total: -87.51 kcal Atomic # 8 Polarization: -84.81 SS G_CDS: -2.38 Total: -87.20 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.36 kcal Atomic # 16 Polarization: 12.02 SS G_CDS: -0.80 Total: 11.22 kcal Total: -96.21 1.78 -94.43 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000770596673.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.109 kcal (2) G-P(sol) polarization free energy of solvation -96.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds