Wall clock time and date at job start Fri Apr 10 2020 14:47:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34680 * 117.00510 * 2 1 4 4 O 1.21446 * 119.99917 * 0.02562 * 3 2 1 5 5 C 1.47949 * 120.00277 * 179.97438 * 3 2 1 6 6 C 1.39682 * 119.97777 * 0.25367 * 5 3 2 7 7 C 1.37699 * 120.07815 * 180.25594 * 6 5 3 8 8 C 1.39689 * 120.03066 * 359.49047 * 7 6 5 9 9 C 1.47787 * 120.02211 * 180.23371 * 8 7 6 10 10 O 1.21459 * 119.99786 * 180.02562 * 9 8 7 11 11 O 1.34704 * 119.99922 * 0.02562 * 9 8 7 12 12 C 1.45203 * 116.99960 * 180.02562 * 11 9 8 13 13 C 1.50694 * 109.47132 * 180.02562 * 12 11 9 14 14 O 1.21292 * 120.00408 * 359.97438 * 13 12 11 15 15 N 1.34777 * 120.00176 * 179.97438 * 13 12 11 16 16 C 1.37090 * 120.00258 * 179.97438 * 15 13 12 17 17 H 1.08001 * 120.00262 * 0.02562 * 16 15 13 18 18 C 1.38958 * 120.00217 * 180.02562 * 16 15 13 19 19 N 1.31410 * 120.00347 * 180.02562 * 18 16 15 20 20 Si 1.86803 * 119.99839 * 0.02562 * 18 16 15 21 21 H 1.48493 * 109.47090 * 89.99686 * 20 18 16 22 22 H 1.48497 * 109.46911 * 210.00179 * 20 18 16 23 23 H 1.48512 * 109.46815 * 329.99842 * 20 18 16 24 24 C 1.39826 * 119.95385 * 0.26286 * 8 7 6 25 25 F 1.35102 * 120.03566 * 180.02562 * 24 8 7 26 26 C 1.38199 * 119.92404 * 359.97438 * 24 8 7 27 27 H 1.09009 * 109.47053 * 59.99499 * 1 2 3 28 28 H 1.08997 * 109.47349 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46931 * 300.00064 * 1 2 3 30 30 H 1.07993 * 119.96095 * 0.02562 * 6 5 3 31 31 H 1.08002 * 119.98767 * 179.77579 * 7 6 5 32 32 H 1.09003 * 109.46934 * 300.00032 * 12 11 9 33 33 H 1.08994 * 109.47487 * 59.99601 * 12 11 9 34 34 H 0.97007 * 119.99394 * 0.02562 * 15 13 12 35 35 H 0.96993 * 119.99957 * 179.97438 * 19 18 16 36 36 H 1.08005 * 120.01352 * 179.97438 * 26 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2000 0.0000 4 8 1.4022 2.2185 0.0005 5 6 3.5410 1.2773 0.0006 6 6 4.3012 0.1055 -0.0042 7 6 5.6765 0.1751 0.0016 8 6 6.3136 1.4182 0.0016 9 6 7.7896 1.4927 0.0027 10 8 8.3431 2.5738 0.0031 11 8 8.5210 0.3615 0.0031 12 6 9.9653 0.5104 0.0047 13 6 10.6107 -0.8513 0.0043 14 8 9.9213 -1.8492 0.0033 15 7 11.9541 -0.9604 0.0051 16 6 12.5412 -2.1992 0.0053 17 1 11.9273 -3.0878 0.0044 18 6 13.9262 -2.3117 0.0067 19 7 14.4891 -3.4992 0.0064 20 14 14.9881 -0.7748 0.0090 21 1 15.2679 -0.3686 1.4096 22 1 16.2677 -1.0563 -0.6900 23 1 14.2725 0.3222 -0.6911 24 6 5.5538 2.5921 0.0012 25 9 6.1683 3.7953 0.0007 26 6 4.1737 2.5201 0.0003 27 1 -0.3634 0.5140 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 3.8099 -0.8561 -0.0088 31 1 6.2629 -0.7319 0.0015 32 1 10.2750 1.0591 -0.8848 33 1 10.2731 1.0586 0.8951 34 1 12.5054 -0.1623 0.0063 35 1 15.4558 -3.5776 0.0069 36 1 3.5855 3.4259 0.0004 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000772545853.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:47:03 Heat of formation + Delta-G solvation = -208.008390 kcal Electronic energy + Delta-G solvation = -25839.603008 eV Core-core repulsion = 21397.624770 eV Total energy + Delta-G solvation = -4441.978238 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.089 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.27591 -41.13222 -40.53492 -38.96602 -38.28037 -36.94862 -36.29737 -34.10711 -32.50696 -31.83304 -31.25003 -28.91528 -28.23858 -25.76153 -24.45559 -23.24504 -22.19048 -21.14291 -19.70544 -18.94055 -18.66081 -18.16484 -17.75651 -16.91119 -16.83239 -16.64183 -16.45561 -16.29452 -15.85262 -15.67533 -15.08079 -14.61230 -14.45210 -14.24385 -13.91848 -13.90523 -13.61740 -13.18527 -12.87079 -12.79090 -12.64921 -12.42837 -12.30898 -12.23657 -11.94846 -11.31914 -11.29365 -11.17746 -10.69035 -10.67366 -10.63351 -10.08235 -9.81410 -9.71189 -9.34885 -8.72557 -8.33041 -6.42484 -3.95582 -0.36305 0.60887 1.62404 2.02902 2.32213 2.40731 2.96664 3.01493 3.10446 3.14822 3.50605 3.63817 3.97760 4.01475 4.13033 4.23858 4.42576 4.54061 4.63801 4.72452 4.73173 5.01007 5.07549 5.09392 5.20716 5.35874 5.48465 5.50622 5.55599 5.61282 5.64219 5.78018 6.11073 6.29353 7.14216 7.39804 7.58395 7.96724 8.43565 8.79912 9.26101 9.60643 10.69588 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.025077 B = 0.002288 C = 0.002100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.276583 B =12235.650780 C =13331.479595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.349 6.349 3 C 0.511 3.489 4 O -0.496 6.496 5 C -0.069 4.069 6 C -0.085 4.085 7 C -0.040 4.040 8 C -0.122 4.122 9 C 0.501 3.499 10 O -0.491 6.491 11 O -0.316 6.316 12 C 0.059 3.941 13 C 0.447 3.553 14 O -0.558 6.558 15 N -0.578 5.578 16 C -0.309 4.309 17 H 0.123 0.877 18 C 0.045 3.955 19 N -0.873 5.873 20 Si 0.879 3.121 21 H -0.268 1.268 22 H -0.274 1.274 23 H -0.268 1.268 24 C 0.155 3.845 25 F -0.107 7.107 26 C -0.107 4.107 27 H 0.066 0.934 28 H 0.106 0.894 29 H 0.066 0.934 30 H 0.157 0.843 31 H 0.167 0.833 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.373 0.627 35 H 0.276 0.724 36 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.471 10.398 0.003 25.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.265 6.265 3 C 0.355 3.645 4 O -0.384 6.384 5 C -0.070 4.070 6 C -0.104 4.104 7 C -0.058 4.058 8 C -0.124 4.124 9 C 0.344 3.656 10 O -0.380 6.380 11 O -0.231 6.231 12 C -0.019 4.019 13 C 0.232 3.768 14 O -0.440 6.440 15 N -0.218 5.218 16 C -0.437 4.437 17 H 0.140 0.860 18 C -0.159 4.159 19 N -0.512 5.512 20 Si 0.705 3.295 21 H -0.194 1.194 22 H -0.199 1.199 23 H -0.193 1.193 24 C 0.135 3.865 25 F -0.085 7.085 26 C -0.126 4.126 27 H 0.084 0.916 28 H 0.125 0.875 29 H 0.085 0.915 30 H 0.175 0.825 31 H 0.185 0.815 32 H 0.109 0.891 33 H 0.109 0.891 34 H 0.207 0.793 35 H 0.087 0.913 36 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -23.740 10.214 0.002 25.844 hybrid contribution 1.095 1.561 -0.014 1.907 sum -22.645 11.774 -0.012 25.523 Atomic orbital electron populations 1.23370 0.75203 1.04252 1.02877 1.86538 1.24106 1.31945 1.83941 1.21023 0.88690 0.81803 0.73027 1.90864 1.66598 1.36032 1.44947 1.19038 0.89689 0.94050 1.04218 1.21565 0.93359 0.98653 0.96777 1.21632 0.94460 0.97395 0.92294 1.19510 0.90638 0.93999 1.08253 1.20845 0.87907 0.82795 0.74030 1.90901 1.72898 1.29412 1.44759 1.86563 1.20369 1.33070 1.83049 1.22829 0.76240 0.98850 1.03936 1.19120 0.83022 0.88932 0.85699 1.90599 1.61917 1.37734 1.53718 1.42030 1.04625 1.08748 1.66349 1.19418 0.91069 0.84423 1.48774 0.85952 1.25047 0.96507 0.97124 0.97203 1.69608 1.11440 1.22042 1.48153 0.86682 0.81167 0.82548 0.79132 1.19372 1.19920 1.19331 1.17354 0.89757 0.80270 0.99120 1.91647 1.82777 1.41333 1.92740 1.21093 0.92012 0.98992 1.00495 0.91551 0.87515 0.91545 0.82549 0.81504 0.89114 0.89097 0.79342 0.91340 0.82248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.17 10.56 101.05 1.07 1.24 16 2 O -0.35 -2.63 9.80 -40.44 -0.40 -3.02 16 3 C 0.51 4.66 7.90 34.71 0.27 4.94 16 4 O -0.50 -5.60 16.12 -19.22 -0.31 -5.91 16 5 C -0.07 -0.60 5.87 -104.93 -0.62 -1.22 16 6 C -0.09 -0.67 9.60 -39.24 -0.38 -1.05 16 7 C -0.04 -0.39 9.60 -39.24 -0.38 -0.76 16 8 C -0.12 -1.46 5.88 -104.86 -0.62 -2.08 16 9 C 0.50 7.57 7.90 34.64 0.27 7.84 16 10 O -0.49 -8.34 15.11 -19.23 -0.29 -8.63 16 11 O -0.32 -5.29 8.99 -47.18 -0.42 -5.72 16 12 C 0.06 1.01 5.95 36.00 0.21 1.22 16 13 C 0.45 9.93 7.86 -10.99 -0.09 9.84 16 14 O -0.56 -14.59 16.08 -14.11 -0.23 -14.82 16 15 N -0.58 -13.31 5.09 -10.97 -0.06 -13.37 16 16 C -0.31 -8.43 10.16 -14.93 -0.15 -8.58 16 17 H 0.12 3.81 7.39 -52.49 -0.39 3.42 16 18 C 0.05 1.20 5.50 -17.47 -0.10 1.11 16 19 N -0.87 -24.69 13.96 55.50 0.77 -23.91 16 20 Si 0.88 18.72 27.74 -169.99 -4.71 14.01 16 21 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 22 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 23 H -0.27 -5.20 6.52 56.52 0.37 -4.83 16 24 C 0.15 1.75 7.28 -39.00 -0.28 1.47 16 25 F -0.11 -1.40 15.53 2.25 0.03 -1.37 16 26 C -0.11 -1.00 9.56 -39.14 -0.37 -1.37 16 27 H 0.07 0.31 8.14 -51.92 -0.42 -0.11 16 28 H 0.11 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.16 0.88 7.59 -52.49 -0.40 0.49 16 31 H 0.17 1.61 7.60 -52.49 -0.40 1.21 16 32 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 33 H 0.09 1.37 8.14 -51.93 -0.42 0.94 16 34 H 0.37 7.49 5.76 -40.82 -0.24 7.25 16 35 H 0.28 7.18 8.31 -40.82 -0.34 6.84 16 36 H 0.16 1.33 7.63 -52.48 -0.40 0.92 16 LS Contribution 337.75 15.07 5.09 5.09 Total: -1.00 -34.17 337.75 -4.77 -38.94 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: -3.10 Total: 6.12 kcal Atomic # 6 Polarization: 13.75 SS G_CDS: -1.15 Total: 12.61 kcal Atomic # 7 Polarization: -38.00 SS G_CDS: 0.72 Total: -37.28 kcal Atomic # 8 Polarization: -36.46 SS G_CDS: -1.65 Total: -38.11 kcal Atomic # 9 Polarization: -1.40 SS G_CDS: 0.03 Total: -1.37 kcal Atomic # 14 Polarization: 18.72 SS G_CDS: -4.71 Total: 14.01 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -34.17 -4.77 -38.94 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000772545853.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -169.073 kcal (2) G-P(sol) polarization free energy of solvation -34.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -203.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -208.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds