Wall clock time and date at job start Fri Apr 10 2020 14:47:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34680 * 117.00510 * 2 1 4 4 O 1.21446 * 119.99917 * 0.02562 * 3 2 1 5 5 C 1.47949 * 120.00277 * 179.97438 * 3 2 1 6 6 C 1.39682 * 119.97777 * 0.25367 * 5 3 2 7 7 C 1.37699 * 120.07815 * 180.25594 * 6 5 3 8 8 C 1.39689 * 120.03066 * 359.49047 * 7 6 5 9 9 C 1.47787 * 120.02211 * 180.23371 * 8 7 6 10 10 O 1.21459 * 119.99786 * 180.02562 * 9 8 7 11 11 O 1.34704 * 119.99922 * 0.02562 * 9 8 7 12 12 C 1.45203 * 116.99960 * 180.02562 * 11 9 8 13 13 C 1.50694 * 109.47132 * 180.02562 * 12 11 9 14 14 O 1.21292 * 120.00408 * 359.97438 * 13 12 11 15 15 N 1.34777 * 120.00176 * 179.97438 * 13 12 11 16 16 C 1.37090 * 120.00258 * 179.97438 * 15 13 12 17 17 H 1.08001 * 120.00262 * 0.02562 * 16 15 13 18 18 C 1.38958 * 120.00217 * 180.02562 * 16 15 13 19 19 N 1.31410 * 120.00347 * 180.02562 * 18 16 15 20 20 Si 1.86803 * 119.99839 * 0.02562 * 18 16 15 21 21 H 1.48493 * 109.47090 * 89.99686 * 20 18 16 22 22 H 1.48497 * 109.46911 * 210.00179 * 20 18 16 23 23 H 1.48512 * 109.46815 * 329.99842 * 20 18 16 24 24 C 1.39826 * 119.95385 * 0.26286 * 8 7 6 25 25 F 1.35102 * 120.03566 * 180.02562 * 24 8 7 26 26 C 1.38199 * 119.92404 * 359.97438 * 24 8 7 27 27 H 1.09009 * 109.47053 * 59.99499 * 1 2 3 28 28 H 1.08997 * 109.47349 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46931 * 300.00064 * 1 2 3 30 30 H 1.07993 * 119.96095 * 0.02562 * 6 5 3 31 31 H 1.08002 * 119.98767 * 179.77579 * 7 6 5 32 32 H 1.09003 * 109.46934 * 300.00032 * 12 11 9 33 33 H 1.08994 * 109.47487 * 59.99601 * 12 11 9 34 34 H 0.97007 * 119.99394 * 0.02562 * 15 13 12 35 35 H 0.96993 * 119.99957 * 179.97438 * 19 18 16 36 36 H 1.08005 * 120.01352 * 179.97438 * 26 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2000 0.0000 4 8 1.4022 2.2185 0.0005 5 6 3.5410 1.2773 0.0006 6 6 4.3012 0.1055 -0.0042 7 6 5.6765 0.1751 0.0016 8 6 6.3136 1.4182 0.0016 9 6 7.7896 1.4927 0.0027 10 8 8.3431 2.5738 0.0031 11 8 8.5210 0.3615 0.0031 12 6 9.9653 0.5104 0.0047 13 6 10.6107 -0.8513 0.0043 14 8 9.9213 -1.8492 0.0033 15 7 11.9541 -0.9604 0.0051 16 6 12.5412 -2.1992 0.0053 17 1 11.9273 -3.0878 0.0044 18 6 13.9262 -2.3117 0.0067 19 7 14.4891 -3.4992 0.0064 20 14 14.9881 -0.7748 0.0090 21 1 15.2679 -0.3686 1.4096 22 1 16.2677 -1.0563 -0.6900 23 1 14.2725 0.3222 -0.6911 24 6 5.5538 2.5921 0.0012 25 9 6.1683 3.7953 0.0007 26 6 4.1737 2.5201 0.0003 27 1 -0.3634 0.5140 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 3.8099 -0.8561 -0.0088 31 1 6.2629 -0.7319 0.0015 32 1 10.2750 1.0591 -0.8848 33 1 10.2731 1.0586 0.8951 34 1 12.5054 -0.1623 0.0063 35 1 15.4558 -3.5776 0.0069 36 1 3.5855 3.4259 0.0004 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000772545853.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:47:03 Heat of formation + Delta-G solvation = -230.115273 kcal Electronic energy + Delta-G solvation = -25840.561634 eV Core-core repulsion = 21397.624770 eV Total energy + Delta-G solvation = -4442.936864 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.089 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -50.19638 -41.96389 -41.60926 -40.27812 -39.58354 -37.64936 -37.58728 -36.07630 -33.86464 -33.34581 -32.01673 -30.31948 -28.86293 -26.89104 -26.01254 -24.08355 -23.09139 -22.04801 -21.54147 -20.53735 -19.72831 -19.24348 -18.60215 -17.94781 -17.91221 -17.53350 -17.50529 -17.25033 -17.05335 -16.83483 -16.79441 -15.79816 -15.76588 -15.23655 -15.07550 -14.72976 -14.51243 -14.49794 -14.23735 -14.12787 -14.04681 -13.58844 -13.40007 -13.10196 -13.00314 -12.67501 -12.45208 -12.03937 -11.98890 -11.94848 -11.85505 -11.75510 -11.58162 -10.63338 -10.60856 -10.33424 -10.12904 -8.45319 -6.08120 -1.19419 -0.15056 0.75728 1.10079 1.31095 1.34125 1.42470 1.44838 1.47021 1.75917 2.20551 2.33983 2.70193 2.81310 3.09149 3.28322 3.37269 3.54679 3.73097 3.77238 3.86696 4.08393 4.12017 4.28732 4.34494 4.37188 4.48931 4.75478 4.77607 4.80414 4.90750 5.06231 5.17261 5.35586 5.47446 5.86168 6.35454 6.47821 6.51142 6.77768 7.26232 7.77061 8.70979 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.025077 B = 0.002288 C = 0.002100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.276583 B =12235.650780 C =13331.479595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.348 6.348 3 C 0.516 3.484 4 O -0.521 6.521 5 C -0.065 4.065 6 C -0.065 4.065 7 C -0.036 4.036 8 C -0.137 4.137 9 C 0.505 3.495 10 O -0.513 6.513 11 O -0.330 6.330 12 C 0.067 3.933 13 C 0.451 3.549 14 O -0.604 6.604 15 N -0.576 5.576 16 C -0.331 4.331 17 H 0.064 0.936 18 C -0.008 4.008 19 N -0.924 5.924 20 Si 0.959 3.041 21 H -0.256 1.256 22 H -0.273 1.273 23 H -0.232 1.232 24 C 0.145 3.855 25 F -0.121 7.121 26 C -0.098 4.098 27 H 0.066 0.934 28 H 0.136 0.864 29 H 0.066 0.934 30 H 0.185 0.815 31 H 0.167 0.833 32 H 0.118 0.882 33 H 0.119 0.881 34 H 0.393 0.607 35 H 0.282 0.718 36 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.369 12.329 -0.032 27.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.264 6.264 3 C 0.360 3.640 4 O -0.411 6.411 5 C -0.066 4.066 6 C -0.082 4.082 7 C -0.054 4.054 8 C -0.139 4.139 9 C 0.350 3.650 10 O -0.403 6.403 11 O -0.245 6.245 12 C -0.010 4.010 13 C 0.238 3.762 14 O -0.488 6.488 15 N -0.218 5.218 16 C -0.460 4.460 17 H 0.082 0.918 18 C -0.208 4.208 19 N -0.564 5.564 20 Si 0.779 3.221 21 H -0.180 1.180 22 H -0.198 1.198 23 H -0.155 1.155 24 C 0.125 3.875 25 F -0.099 7.099 26 C -0.117 4.117 27 H 0.085 0.915 28 H 0.154 0.846 29 H 0.085 0.915 30 H 0.202 0.798 31 H 0.185 0.815 32 H 0.136 0.864 33 H 0.137 0.863 34 H 0.229 0.771 35 H 0.092 0.908 36 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -24.664 12.150 -0.035 27.494 hybrid contribution 1.160 0.816 0.000 1.418 sum -23.504 12.967 -0.034 26.844 Atomic orbital electron populations 1.23679 0.73562 1.06234 1.02972 1.86531 1.25682 1.30835 1.83333 1.20996 0.88597 0.81961 0.72407 1.90861 1.67077 1.36929 1.46231 1.19120 0.89864 0.94070 1.03544 1.21785 0.92375 0.99539 0.94539 1.21655 0.95199 0.96458 0.92069 1.19455 0.88891 0.95200 1.10357 1.21261 0.88829 0.81886 0.73039 1.90883 1.73475 1.29863 1.46037 1.86556 1.20159 1.34260 1.83476 1.22687 0.76608 0.95086 1.06598 1.20051 0.82585 0.90574 0.83020 1.90577 1.62994 1.40210 1.55044 1.41814 1.05269 1.07912 1.66818 1.19000 0.91395 0.84613 1.50955 0.91821 1.26067 0.97562 1.01466 0.95690 1.69772 1.12252 1.25279 1.49096 0.85448 0.78520 0.78042 0.80122 1.18006 1.19799 1.15505 1.17440 0.90295 0.79551 1.00191 1.91607 1.83155 1.42135 1.93034 1.21149 0.91135 0.99808 0.99572 0.91492 0.84639 0.91487 0.79813 0.81503 0.86401 0.86293 0.77130 0.90850 0.81335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 10.56 113.37 1.20 1.40 16 2 O -0.35 -4.34 9.80 -55.89 -0.55 -4.89 16 3 C 0.52 8.35 7.90 70.40 0.56 8.91 16 4 O -0.52 -10.98 16.12 20.01 0.32 -10.65 16 5 C -0.06 -0.99 5.87 -20.06 -0.12 -1.11 16 6 C -0.06 -0.85 9.60 22.49 0.22 -0.63 16 7 C -0.04 -0.64 9.60 22.49 0.22 -0.42 16 8 C -0.14 -3.15 5.88 -20.02 -0.12 -3.27 16 9 C 0.50 14.74 7.90 70.35 0.56 15.30 16 10 O -0.51 -16.80 15.11 19.97 0.30 -16.50 16 11 O -0.33 -10.70 8.99 -49.75 -0.45 -11.15 16 12 C 0.07 2.16 5.95 71.23 0.42 2.59 16 13 C 0.45 19.93 7.86 87.66 0.69 20.62 16 14 O -0.60 -32.51 16.08 15.73 0.25 -32.26 16 15 N -0.58 -26.27 5.09 -306.99 -1.56 -27.84 16 16 C -0.33 -18.67 10.16 84.04 0.85 -17.82 16 17 H 0.06 4.26 7.39 -2.91 -0.02 4.24 16 18 C -0.01 -0.41 5.50 84.93 0.47 0.05 16 19 N -0.92 -53.82 13.96 21.67 0.30 -53.52 16 20 Si 0.96 37.37 27.74 68.60 1.90 39.27 16 21 H -0.26 -9.47 7.11 99.48 0.71 -8.76 16 22 H -0.27 -10.59 7.11 99.48 0.71 -9.88 16 23 H -0.23 -7.62 6.52 99.48 0.65 -6.97 16 24 C 0.15 3.15 7.28 22.64 0.16 3.31 16 25 F -0.12 -3.13 15.53 44.97 0.70 -2.43 16 26 C -0.10 -1.68 9.56 22.55 0.22 -1.47 16 27 H 0.07 0.50 8.14 -2.38 -0.02 0.48 16 28 H 0.14 0.19 8.14 -2.39 -0.02 0.17 16 29 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.18 1.44 7.59 -2.91 -0.02 1.41 16 31 H 0.17 3.03 7.60 -2.91 -0.02 3.01 16 32 H 0.12 3.22 8.14 -2.39 -0.02 3.20 16 33 H 0.12 3.23 8.14 -2.39 -0.02 3.21 16 34 H 0.39 14.72 5.76 -92.70 -0.53 14.19 16 35 H 0.28 14.97 8.31 -92.71 -0.77 14.19 16 36 H 0.17 2.58 7.63 -2.91 -0.02 2.56 16 Total: -1.00 -78.11 337.75 7.12 -70.99 By element: Atomic # 1 Polarization: 20.94 SS G_CDS: 0.57 Total: 21.51 kcal Atomic # 6 Polarization: 22.13 SS G_CDS: 5.32 Total: 27.46 kcal Atomic # 7 Polarization: -80.09 SS G_CDS: -1.26 Total: -81.35 kcal Atomic # 8 Polarization: -75.33 SS G_CDS: -0.12 Total: -75.45 kcal Atomic # 9 Polarization: -3.13 SS G_CDS: 0.70 Total: -2.43 kcal Atomic # 14 Polarization: 37.37 SS G_CDS: 1.90 Total: 39.27 kcal Total: -78.11 7.12 -70.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000772545853.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -159.122 kcal (2) G-P(sol) polarization free energy of solvation -78.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -237.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -230.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds