Wall clock time and date at job start Fri Apr 10 2020 14:47:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34228 * 116.99808 * 2 1 4 4 O 1.20820 * 119.99977 * 0.02562 * 3 2 1 5 5 C 1.50701 * 119.99567 * 180.02562 * 3 2 1 6 6 O 1.42896 * 110.89029 * 328.88138 * 5 3 2 7 7 C 1.55165 * 111.00235 * 205.00066 * 5 3 2 8 8 C 1.54325 * 102.94193 * 206.42471 * 7 5 3 9 9 N 1.47021 * 107.26976 * 22.19012 * 8 7 5 10 10 C 1.34783 * 125.64457 * 181.01846 * 9 8 7 11 11 O 1.21761 * 119.99867 * 180.02562 * 10 9 8 12 12 C 1.46241 * 120.00089 * 0.03229 * 10 9 8 13 13 S 1.75666 * 125.22709 * 359.97438 * 12 10 9 14 14 C 1.75468 * 92.09061 * 179.97438 * 13 12 10 15 15 C 1.32768 * 111.36656 * 359.75243 * 14 13 12 16 16 C 1.39541 * 125.22775 * 179.97438 * 12 10 9 17 17 C 1.40538 * 123.71441 * 359.96414 * 16 12 10 18 18 H 1.07999 * 119.99985 * 24.53495 * 17 16 12 19 19 C 1.40315 * 119.99772 * 204.53992 * 17 16 12 20 20 N 1.30637 * 119.99513 * 196.32305 * 19 17 16 21 21 Si 1.86794 * 120.00091 * 16.04574 * 19 17 16 22 22 H 1.48503 * 109.47380 * 263.62428 * 21 19 17 23 23 H 1.48500 * 109.47348 * 23.62419 * 21 19 17 24 24 H 1.48500 * 109.47306 * 143.62519 * 21 19 17 25 25 C 1.47417 * 108.70728 * 1.29036 * 9 8 7 26 26 H 1.08999 * 109.47069 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46739 * 299.99245 * 1 2 3 28 28 H 1.08999 * 109.47454 * 59.99375 * 1 2 3 29 29 H 0.96699 * 114.00038 * 56.11898 * 6 5 3 30 30 H 1.08998 * 110.71596 * 88.06085 * 7 5 3 31 31 H 1.08996 * 110.71899 * 324.79102 * 7 5 3 32 32 H 1.08996 * 109.87703 * 262.77578 * 8 7 5 33 33 H 1.09000 * 109.88281 * 141.61129 * 8 7 5 34 34 H 1.08001 * 124.32033 * 180.02562 * 14 13 12 35 35 H 1.07997 * 122.79073 * 180.22827 * 15 14 13 36 36 H 0.97003 * 120.00486 * 352.83332 * 20 19 17 37 37 H 1.09004 * 110.37163 * 94.47877 * 25 9 8 38 38 H 1.08997 * 110.37056 * 216.80318 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 8 4.1352 0.1600 0.6889 7 6 4.0533 2.6148 0.6117 8 6 5.4252 2.8248 -0.0631 9 7 5.4256 2.0385 -1.3053 10 6 6.4523 1.9412 -2.1731 11 8 6.3401 1.2582 -3.1748 12 6 7.7011 2.6559 -1.9114 13 16 8.0113 3.6760 -0.5153 14 6 9.6372 4.0425 -1.0640 15 6 9.9106 3.4303 -2.2099 16 6 8.8292 2.6322 -2.7322 17 6 8.9056 1.9050 -3.9324 18 1 8.0034 1.6567 -4.4716 19 6 10.1539 1.5016 -4.4301 20 7 10.2681 1.1173 -5.6734 21 14 11.6539 1.5216 -3.3171 22 1 12.4082 2.7837 -3.5254 23 1 11.2198 1.4326 -1.8997 24 1 12.5262 0.3643 -3.6411 25 6 4.1147 1.3793 -1.4480 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 3.8598 -0.6995 0.3417 30 1 4.1644 2.5271 1.6924 31 1 3.3704 3.4255 0.3577 32 1 6.2198 2.4762 0.5965 33 1 5.5677 3.8808 -0.2927 34 1 10.3291 4.6809 -0.5346 35 1 10.8625 3.5251 -2.7111 36 1 9.4759 1.0110 -6.2230 37 1 3.4507 1.9848 -2.0649 38 1 4.2346 0.3859 -1.8803 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882864113.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:47:09 Heat of formation + Delta-G solvation = -134.541364 kcal Electronic energy + Delta-G solvation = -25516.687481 eV Core-core repulsion = 21644.108188 eV Total energy + Delta-G solvation = -3872.579293 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.11885 -39.24603 -37.54530 -36.79525 -36.20416 -34.97756 -33.37608 -30.85074 -29.57978 -28.90936 -27.96033 -26.36222 -24.01468 -22.68416 -21.62563 -20.54738 -20.26750 -19.04734 -18.73104 -17.58299 -17.23604 -16.65916 -16.53759 -15.69854 -15.28717 -15.03162 -14.89404 -14.38816 -14.05348 -13.61901 -13.54052 -13.42814 -13.37417 -13.19775 -12.62035 -12.27109 -12.17566 -12.10654 -11.98184 -11.61953 -11.58761 -11.33164 -11.13713 -11.11947 -10.97515 -10.80255 -10.22086 -10.08983 -9.96345 -9.49377 -9.31039 -8.59870 -8.08809 -7.81186 -7.57471 -7.24816 -4.63740 1.77311 1.89746 2.25664 2.87093 2.97161 3.19288 3.34055 3.45528 3.52946 3.61607 3.82680 3.86268 4.09280 4.26917 4.38753 4.63732 4.79555 4.87955 5.08921 5.14855 5.21708 5.27696 5.56365 5.62106 5.73246 5.77048 5.95530 6.00812 6.06172 6.14001 6.37393 6.84428 6.89954 7.16543 7.21024 7.30508 7.44005 7.44309 8.08716 8.21922 8.45389 8.63613 9.38669 9.73437 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.021802 B = 0.003621 C = 0.003287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.973152 B = 7730.465128 C = 8516.963017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.357 6.357 3 C 0.453 3.547 4 O -0.495 6.495 5 C 0.130 3.870 6 O -0.525 6.525 7 C -0.105 4.105 8 C 0.105 3.895 9 N -0.628 5.628 10 C 0.618 3.382 11 O -0.557 6.557 12 C -0.430 4.430 13 S -0.004 6.004 14 C -0.190 4.190 15 C -0.164 4.164 16 C 0.115 3.885 17 C -0.425 4.425 18 H 0.109 0.891 19 C 0.035 3.965 20 N -0.782 5.782 21 Si 1.067 2.933 22 H -0.273 1.273 23 H -0.255 1.255 24 H -0.282 1.282 25 C 0.104 3.896 26 H 0.103 0.897 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.389 0.611 30 H 0.097 0.903 31 H 0.104 0.896 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.143 0.857 35 H 0.123 0.877 36 H 0.295 0.705 37 H 0.071 0.929 38 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.148 -0.210 11.493 16.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.274 6.274 3 C 0.294 3.706 4 O -0.381 6.381 5 C 0.086 3.914 6 O -0.331 6.331 7 C -0.143 4.143 8 C -0.019 4.019 9 N -0.365 5.365 10 C 0.418 3.582 11 O -0.439 6.439 12 C -0.548 4.548 13 S 0.254 5.746 14 C -0.324 4.324 15 C -0.197 4.197 16 C 0.104 3.896 17 C -0.456 4.456 18 H 0.126 0.874 19 C -0.189 4.189 20 N -0.404 5.404 21 Si 0.892 3.108 22 H -0.200 1.200 23 H -0.180 1.180 24 H -0.209 1.209 25 C -0.020 4.020 26 H 0.122 0.878 27 H 0.082 0.918 28 H 0.083 0.917 29 H 0.238 0.762 30 H 0.115 0.885 31 H 0.123 0.877 32 H 0.099 0.901 33 H 0.096 0.904 34 H 0.161 0.839 35 H 0.141 0.859 36 H 0.107 0.893 37 H 0.089 0.911 38 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -10.310 0.343 12.375 16.111 hybrid contribution -1.420 -0.431 -1.643 2.214 sum -11.730 -0.088 10.732 15.899 Atomic orbital electron populations 1.23315 0.75894 1.03942 1.02700 1.86481 1.23891 1.33251 1.83733 1.24370 0.92180 0.81782 0.72275 1.90672 1.66590 1.36270 1.44561 1.22301 0.82968 0.90778 0.95353 1.86600 1.71707 1.16038 1.58775 1.22747 0.97154 0.92677 1.01697 1.21895 0.96276 0.97017 0.86738 1.48075 1.13010 1.51259 1.24198 1.16496 0.80645 0.80141 0.80901 1.90695 1.81780 1.43461 1.28005 1.22315 1.02053 1.25805 1.04667 1.83064 1.09134 1.53393 1.28996 1.25240 1.01326 1.05349 1.00458 1.21382 0.99931 1.01028 0.97408 1.17892 0.88844 0.91336 0.91542 1.21030 0.96840 1.24584 1.03116 0.87352 1.27667 1.03063 0.91615 0.96572 1.70400 1.35581 1.29108 1.05275 0.83767 0.73290 0.77268 0.76443 1.19979 1.17975 1.20916 1.22445 0.86757 1.00193 0.92635 0.87840 0.91753 0.91681 0.76166 0.88487 0.87743 0.90079 0.90399 0.83931 0.85928 0.89280 0.91069 0.89317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.56 101.05 1.07 1.33 16 2 O -0.36 -3.81 9.97 -44.29 -0.44 -4.25 16 3 C 0.45 5.74 6.96 36.01 0.25 5.99 16 4 O -0.49 -7.15 15.58 -18.75 -0.29 -7.44 16 5 C 0.13 1.73 1.29 -89.50 -0.12 1.62 16 6 O -0.52 -6.76 13.14 -48.54 -0.64 -7.40 16 7 C -0.10 -1.36 6.03 -24.89 -0.15 -1.51 16 8 C 0.11 1.70 5.16 -3.06 -0.02 1.68 16 9 N -0.63 -12.30 3.32 -172.08 -0.57 -12.87 16 10 C 0.62 15.20 7.80 -13.04 -0.10 15.10 16 11 O -0.56 -15.47 14.72 5.13 0.08 -15.40 16 12 C -0.43 -10.60 6.44 -35.88 -0.23 -10.83 16 13 S 0.00 -0.07 18.50 -107.50 -1.99 -2.06 16 14 C -0.19 -3.75 11.07 28.86 0.32 -3.43 16 15 C -0.16 -3.69 7.39 -39.12 -0.29 -3.98 16 16 C 0.11 2.96 5.30 -106.21 -0.56 2.39 16 17 C -0.43 -11.67 8.88 -37.93 -0.34 -12.01 16 18 H 0.11 3.28 6.27 -52.49 -0.33 2.95 16 19 C 0.03 0.89 5.49 -17.28 -0.09 0.80 16 20 N -0.78 -20.37 13.64 55.57 0.76 -19.62 16 21 Si 1.07 22.70 24.85 -169.99 -4.22 18.48 16 22 H -0.27 -5.33 6.79 56.52 0.38 -4.95 16 23 H -0.26 -5.41 6.45 56.52 0.36 -5.04 16 24 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 25 C 0.10 1.69 6.11 -2.41 -0.01 1.67 16 26 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.06 0.47 8.13 -51.93 -0.42 0.05 16 28 H 0.06 0.50 8.13 -51.93 -0.42 0.08 16 29 H 0.39 3.72 8.63 45.56 0.39 4.11 16 30 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.10 1.30 7.21 -51.93 -0.37 0.92 16 32 H 0.08 1.36 6.81 -51.93 -0.35 1.00 16 33 H 0.08 1.25 6.97 -51.93 -0.36 0.89 16 34 H 0.14 2.28 8.06 -52.49 -0.42 1.85 16 35 H 0.12 2.58 4.44 -52.49 -0.23 2.35 16 36 H 0.29 7.59 8.73 -40.82 -0.36 7.24 16 37 H 0.07 1.13 8.03 -51.93 -0.42 0.71 16 38 H 0.09 1.46 8.03 -51.93 -0.42 1.04 16 LS Contribution 328.26 15.07 4.95 4.95 Total: -1.00 -32.22 328.26 -6.06 -38.28 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: -3.41 Total: 8.51 kcal Atomic # 6 Polarization: -0.90 SS G_CDS: -0.28 Total: -1.17 kcal Atomic # 7 Polarization: -32.68 SS G_CDS: 0.19 Total: -32.49 kcal Atomic # 8 Polarization: -33.19 SS G_CDS: -1.30 Total: -34.49 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -4.22 Total: 18.48 kcal Atomic # 16 Polarization: -0.07 SS G_CDS: -1.99 Total: -2.06 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -32.22 -6.06 -38.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882864113.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.260 kcal (2) G-P(sol) polarization free energy of solvation -32.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds