Wall clock time and date at job start Fri Apr 10 2020 14:47:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34228 * 116.99808 * 2 1 4 4 O 1.20820 * 119.99977 * 0.02562 * 3 2 1 5 5 C 1.50701 * 119.99567 * 180.02562 * 3 2 1 6 6 O 1.42896 * 110.89029 * 328.88138 * 5 3 2 7 7 C 1.55165 * 111.00235 * 205.00066 * 5 3 2 8 8 C 1.54325 * 102.94193 * 206.42471 * 7 5 3 9 9 N 1.47021 * 107.26976 * 22.19012 * 8 7 5 10 10 C 1.34783 * 125.64457 * 181.01846 * 9 8 7 11 11 O 1.21761 * 119.99867 * 180.02562 * 10 9 8 12 12 C 1.46241 * 120.00089 * 0.03229 * 10 9 8 13 13 S 1.75666 * 125.22709 * 359.97438 * 12 10 9 14 14 C 1.75468 * 92.09061 * 179.97438 * 13 12 10 15 15 C 1.32768 * 111.36656 * 359.75243 * 14 13 12 16 16 C 1.39541 * 125.22775 * 179.97438 * 12 10 9 17 17 C 1.40538 * 123.71441 * 359.96414 * 16 12 10 18 18 H 1.07999 * 119.99985 * 24.53495 * 17 16 12 19 19 C 1.40315 * 119.99772 * 204.53992 * 17 16 12 20 20 N 1.30637 * 119.99513 * 196.32305 * 19 17 16 21 21 Si 1.86794 * 120.00091 * 16.04574 * 19 17 16 22 22 H 1.48503 * 109.47380 * 263.62428 * 21 19 17 23 23 H 1.48500 * 109.47348 * 23.62419 * 21 19 17 24 24 H 1.48500 * 109.47306 * 143.62519 * 21 19 17 25 25 C 1.47417 * 108.70728 * 1.29036 * 9 8 7 26 26 H 1.08999 * 109.47069 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46739 * 299.99245 * 1 2 3 28 28 H 1.08999 * 109.47454 * 59.99375 * 1 2 3 29 29 H 0.96699 * 114.00038 * 56.11898 * 6 5 3 30 30 H 1.08998 * 110.71596 * 88.06085 * 7 5 3 31 31 H 1.08996 * 110.71899 * 324.79102 * 7 5 3 32 32 H 1.08996 * 109.87703 * 262.77578 * 8 7 5 33 33 H 1.09000 * 109.88281 * 141.61129 * 8 7 5 34 34 H 1.08001 * 124.32033 * 180.02562 * 14 13 12 35 35 H 1.07997 * 122.79073 * 180.22827 * 15 14 13 36 36 H 0.97003 * 120.00486 * 352.83332 * 20 19 17 37 37 H 1.09004 * 110.37163 * 94.47877 * 25 9 8 38 38 H 1.08997 * 110.37056 * 216.80318 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 8 4.1352 0.1600 0.6889 7 6 4.0533 2.6148 0.6117 8 6 5.4252 2.8248 -0.0631 9 7 5.4256 2.0385 -1.3053 10 6 6.4523 1.9412 -2.1731 11 8 6.3401 1.2582 -3.1748 12 6 7.7011 2.6559 -1.9114 13 16 8.0113 3.6760 -0.5153 14 6 9.6372 4.0425 -1.0640 15 6 9.9106 3.4303 -2.2099 16 6 8.8292 2.6322 -2.7322 17 6 8.9056 1.9050 -3.9324 18 1 8.0034 1.6567 -4.4716 19 6 10.1539 1.5016 -4.4301 20 7 10.2681 1.1173 -5.6734 21 14 11.6539 1.5216 -3.3171 22 1 12.4082 2.7837 -3.5254 23 1 11.2198 1.4326 -1.8997 24 1 12.5262 0.3643 -3.6411 25 6 4.1147 1.3793 -1.4480 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 3.8598 -0.6995 0.3417 30 1 4.1644 2.5271 1.6924 31 1 3.3704 3.4255 0.3577 32 1 6.2198 2.4762 0.5965 33 1 5.5677 3.8808 -0.2927 34 1 10.3291 4.6809 -0.5346 35 1 10.8625 3.5251 -2.7111 36 1 9.4759 1.0110 -6.2230 37 1 3.4507 1.9848 -2.0649 38 1 4.2346 0.3859 -1.8803 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882864113.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:47:08 Heat of formation + Delta-G solvation = -159.146990 kcal Electronic energy + Delta-G solvation = -25517.754461 eV Core-core repulsion = 21644.108188 eV Total energy + Delta-G solvation = -3873.646273 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.17635 -40.67639 -39.10851 -37.90311 -37.75517 -36.40862 -35.23988 -32.26600 -31.09831 -30.30630 -28.98017 -27.98993 -25.44245 -23.87610 -23.31188 -21.97146 -21.59033 -20.87728 -19.77828 -19.03475 -18.38596 -18.30974 -17.60258 -16.96033 -16.78268 -16.65485 -16.41157 -15.65958 -15.32182 -15.11216 -15.05608 -14.90712 -14.79246 -14.33512 -13.89851 -13.85369 -13.64290 -13.45555 -13.20996 -13.14562 -12.98434 -12.75674 -12.61352 -12.43763 -12.07380 -11.93130 -11.89291 -11.68675 -11.30358 -11.20164 -11.04015 -10.53849 -9.81313 -9.64753 -9.37037 -9.02809 -6.59646 0.11908 0.74771 1.23534 1.27909 1.31991 1.49488 1.59125 1.69473 1.79524 2.10976 2.15577 2.39372 2.82930 2.97421 3.13796 3.21742 3.61912 3.98030 4.06684 4.16452 4.23098 4.28760 4.31247 4.37235 4.45928 4.62284 4.65032 4.67590 4.80358 4.92873 5.10874 5.18477 5.22821 5.33460 5.40933 5.59830 6.15797 6.24566 6.29324 6.50999 6.57364 6.75611 7.50258 7.76182 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.021802 B = 0.003621 C = 0.003287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.973152 B = 7730.465128 C = 8516.963017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.357 6.357 3 C 0.461 3.539 4 O -0.512 6.512 5 C 0.142 3.858 6 O -0.531 6.531 7 C -0.095 4.095 8 C 0.100 3.900 9 N -0.628 5.628 10 C 0.605 3.395 11 O -0.605 6.605 12 C -0.462 4.462 13 S 0.075 5.925 14 C -0.169 4.169 15 C -0.200 4.200 16 C 0.103 3.897 17 C -0.474 4.474 18 H 0.057 0.943 19 C 0.005 3.995 20 N -0.809 5.809 21 Si 1.103 2.897 22 H -0.237 1.237 23 H -0.252 1.252 24 H -0.277 1.277 25 C 0.096 3.904 26 H 0.135 0.865 27 H 0.069 0.931 28 H 0.063 0.937 29 H 0.402 0.598 30 H 0.123 0.877 31 H 0.114 0.886 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.195 0.805 35 H 0.137 0.863 36 H 0.281 0.719 37 H 0.073 0.927 38 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.200 1.200 15.494 19.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.273 6.273 3 C 0.303 3.697 4 O -0.400 6.400 5 C 0.098 3.902 6 O -0.339 6.339 7 C -0.133 4.133 8 C -0.024 4.024 9 N -0.362 5.362 10 C 0.404 3.596 11 O -0.491 6.491 12 C -0.580 4.580 13 S 0.334 5.666 14 C -0.303 4.303 15 C -0.233 4.233 16 C 0.091 3.909 17 C -0.505 4.505 18 H 0.075 0.925 19 C -0.212 4.212 20 N -0.431 5.431 21 Si 0.921 3.079 22 H -0.162 1.162 23 H -0.176 1.176 24 H -0.203 1.203 25 C -0.027 4.027 26 H 0.153 0.847 27 H 0.088 0.912 28 H 0.082 0.918 29 H 0.254 0.746 30 H 0.141 0.859 31 H 0.132 0.868 32 H 0.099 0.901 33 H 0.100 0.900 34 H 0.212 0.788 35 H 0.155 0.845 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -10.429 1.758 16.411 19.524 hybrid contribution -1.734 -0.863 -2.685 3.311 sum -12.163 0.895 13.726 18.362 Atomic orbital electron populations 1.23662 0.73868 1.06165 1.02898 1.86466 1.25768 1.31956 1.83073 1.24024 0.91664 0.82106 0.71934 1.90671 1.66848 1.36949 1.45546 1.22037 0.83757 0.91393 0.93017 1.86574 1.71931 1.16772 1.58631 1.22765 0.95094 0.92636 1.02805 1.22122 0.98467 0.96587 0.85214 1.47997 1.12942 1.51023 1.24279 1.16816 0.81945 0.79839 0.81035 1.90669 1.82968 1.45257 1.30167 1.22963 1.01863 1.26178 1.07015 1.82676 1.08682 1.50308 1.24963 1.25912 1.01834 1.03449 0.99104 1.21346 1.00056 1.02587 0.99261 1.18285 0.90754 0.90828 0.91010 1.20805 0.95934 1.28515 1.05248 0.92473 1.28960 1.05187 0.90100 0.96992 1.70487 1.34653 1.31981 1.05992 0.83398 0.70653 0.79117 0.74752 1.16179 1.17608 1.20346 1.22619 0.85394 0.99457 0.95278 0.84702 0.91241 0.91837 0.74584 0.85874 0.86770 0.90130 0.89958 0.78833 0.84540 0.90840 0.90866 0.90290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.56 113.37 1.20 1.54 16 2 O -0.36 -6.84 9.97 -46.59 -0.46 -7.31 16 3 C 0.46 10.76 6.96 71.24 0.50 11.26 16 4 O -0.51 -13.74 15.58 21.98 0.34 -13.39 16 5 C 0.14 3.53 1.29 -10.07 -0.01 3.52 16 6 O -0.53 -12.55 13.14 -136.26 -1.79 -14.34 16 7 C -0.10 -2.20 6.03 31.79 0.19 -2.01 16 8 C 0.10 2.99 5.16 86.73 0.45 3.44 16 9 N -0.63 -24.57 3.32 -816.51 -2.71 -27.29 16 10 C 0.60 30.79 7.80 86.32 0.67 31.46 16 11 O -0.60 -36.08 14.72 -4.54 -0.07 -36.15 16 12 C -0.46 -22.90 6.44 24.67 0.16 -22.74 16 13 S 0.07 2.72 18.50 -56.49 -1.05 1.67 16 14 C -0.17 -5.94 11.07 66.64 0.74 -5.20 16 15 C -0.20 -8.58 7.39 22.61 0.17 -8.41 16 16 C 0.10 5.40 5.30 -20.89 -0.11 5.29 16 17 C -0.47 -27.87 8.88 23.34 0.21 -27.66 16 18 H 0.06 3.85 6.27 -2.91 -0.02 3.83 16 19 C 0.00 0.26 5.49 85.38 0.47 0.73 16 20 N -0.81 -44.96 13.64 21.89 0.30 -44.66 16 21 Si 1.10 45.56 24.85 68.60 1.70 47.27 16 22 H -0.24 -8.40 6.79 99.48 0.67 -7.72 16 23 H -0.25 -10.15 6.45 99.48 0.64 -9.51 16 24 H -0.28 -11.04 7.11 99.48 0.71 -10.33 16 25 C 0.10 3.12 6.11 86.93 0.53 3.65 16 26 H 0.13 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.07 0.85 8.13 -2.39 -0.02 0.83 16 28 H 0.06 0.86 8.13 -2.39 -0.02 0.84 16 29 H 0.40 7.01 8.63 -74.06 -0.64 6.37 16 30 H 0.12 2.27 8.14 -2.39 -0.02 2.25 16 31 H 0.11 2.47 7.21 -2.39 -0.02 2.46 16 32 H 0.08 2.45 6.81 -2.39 -0.02 2.44 16 33 H 0.08 2.41 6.97 -2.39 -0.02 2.40 16 34 H 0.19 4.84 8.06 -2.91 -0.02 4.81 16 35 H 0.14 5.41 4.44 -2.91 -0.01 5.40 16 36 H 0.28 15.89 8.73 -92.71 -0.81 15.08 16 37 H 0.07 2.34 8.03 -2.38 -0.02 2.32 16 38 H 0.08 2.69 8.03 -2.39 -0.02 2.67 16 Total: -1.00 -76.12 328.26 1.77 -74.35 By element: Atomic # 1 Polarization: 24.63 SS G_CDS: 0.35 Total: 24.98 kcal Atomic # 6 Polarization: -10.28 SS G_CDS: 5.15 Total: -5.13 kcal Atomic # 7 Polarization: -69.53 SS G_CDS: -2.42 Total: -71.95 kcal Atomic # 8 Polarization: -69.21 SS G_CDS: -1.98 Total: -71.19 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 1.70 Total: 47.27 kcal Atomic # 16 Polarization: 2.72 SS G_CDS: -1.05 Total: 1.67 kcal Total: -76.12 1.77 -74.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882864113.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.798 kcal (2) G-P(sol) polarization free energy of solvation -76.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds