Wall clock time and date at job start Fri Apr 10 2020 14:48:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 O 1.42100 * 109.47244 * 2 1 4 4 C 1.76200 * 103.00292 * 109.05907 * 2 1 3 5 5 C 1.38366 * 119.84697 * 90.00052 * 4 2 1 6 6 C 1.37947 * 120.14940 * 179.97438 * 5 4 2 7 7 C 1.39638 * 119.84632 * 0.02562 * 6 5 4 8 8 C 1.47726 * 120.14673 * 180.02562 * 7 6 5 9 9 O 1.21462 * 120.00112 * 359.97438 * 8 7 6 10 10 O 1.34713 * 119.99369 * 179.97438 * 8 7 6 11 11 C 1.45208 * 116.99431 * 179.97438 * 10 8 7 12 12 C 1.50703 * 109.46888 * 180.02562 * 11 10 8 13 13 O 1.21285 * 119.99740 * 359.97438 * 12 11 10 14 14 N 1.34775 * 119.99770 * 179.97438 * 12 11 10 15 15 C 1.46501 * 119.99712 * 179.97438 * 14 12 11 16 16 C 1.50700 * 109.47281 * 179.97438 * 15 14 12 17 17 H 1.07997 * 119.99478 * 0.02562 * 16 15 14 18 18 C 1.37870 * 120.00489 * 179.97438 * 16 15 14 19 19 N 1.31508 * 120.00346 * 180.02562 * 18 16 15 20 20 Si 1.86802 * 119.99822 * 0.02562 * 18 16 15 21 21 H 1.48504 * 109.47312 * 89.99247 * 20 18 16 22 22 H 1.48497 * 109.47361 * 209.99823 * 20 18 16 23 23 H 1.48502 * 109.47012 * 329.99770 * 20 18 16 24 24 C 1.39621 * 119.69962 * 0.27203 * 7 6 5 25 25 C 1.37952 * 119.84789 * 359.42616 * 24 7 6 26 26 H 1.09003 * 109.46597 * 310.94007 * 1 2 3 27 27 H 1.08993 * 109.47775 * 70.93883 * 1 2 3 28 28 H 1.08999 * 109.46963 * 190.94766 * 1 2 3 29 29 H 1.07993 * 119.92708 * 359.97269 * 5 4 2 30 30 H 1.07995 * 120.07944 * 179.97438 * 6 5 4 31 31 H 1.08995 * 109.46854 * 300.00134 * 11 10 8 32 32 H 1.08994 * 109.47061 * 60.00296 * 11 10 8 33 33 H 0.96992 * 120.00178 * 0.02562 * 14 12 11 34 34 H 1.08998 * 109.47218 * 300.00313 * 15 14 12 35 35 H 1.09006 * 109.46644 * 60.00271 * 15 14 12 36 36 H 0.97005 * 119.99810 * 180.02562 * 19 18 16 37 37 H 1.08004 * 120.07573 * 179.70361 * 24 7 6 38 38 H 1.07998 * 119.92402 * 180.29633 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 8 2.2876 1.3397 0.0000 4 6 2.2104 -0.5606 1.6227 5 6 2.3654 -1.9140 1.8650 6 6 2.6762 -2.3598 3.1329 7 6 2.8340 -1.4416 4.1731 8 6 3.1675 -1.9116 5.5333 9 8 3.3046 -3.0991 5.7490 10 8 3.3196 -1.0231 6.5344 11 6 3.6464 -1.5563 7.8449 12 6 3.7758 -0.4233 8.8302 13 8 3.6096 0.7208 8.4638 14 7 4.0764 -0.6816 10.1183 15 6 4.2028 0.4199 11.0760 16 6 4.5406 -0.1335 12.4364 17 1 4.6506 -1.1990 12.5737 18 6 4.7103 0.7205 13.5053 19 7 5.0056 0.2377 14.6924 20 14 4.5208 2.5636 13.2675 21 1 3.1064 2.9503 13.5023 22 1 5.3960 3.2796 14.2302 23 1 4.9095 2.9264 11.8809 24 6 2.6701 -0.0779 3.9228 25 6 2.3654 0.3546 2.6488 26 1 -0.3632 0.6734 0.7763 27 1 -0.3634 0.3356 -0.9712 28 1 -0.3633 -1.0090 0.1952 29 1 2.2426 -2.6231 1.0597 30 1 2.7965 -3.4164 3.3208 31 1 2.8549 -2.2315 8.1701 32 1 4.5890 -2.1008 7.7909 33 1 4.2097 -1.5966 10.4112 34 1 4.9946 1.0948 10.7510 35 1 3.2602 0.9647 11.1295 36 1 5.1246 0.8386 15.4445 37 1 2.7860 0.6372 4.7239 38 1 2.2430 1.4096 2.4528 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000917353146.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:48:13 Heat of formation + Delta-G solvation = -126.808323 kcal Electronic energy + Delta-G solvation = -23434.508546 eV Core-core repulsion = 19562.264584 eV Total energy + Delta-G solvation = -3872.243963 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.89946 -39.35563 -38.69579 -36.52591 -36.22295 -34.42772 -32.48137 -32.12124 -31.49695 -29.57096 -29.28211 -27.28564 -24.82573 -23.21532 -22.22271 -21.23079 -20.18976 -18.75822 -18.37010 -17.63695 -17.12415 -16.78909 -16.59272 -15.89243 -15.65897 -15.32966 -15.12755 -14.95959 -14.85748 -14.31744 -14.14024 -13.86863 -13.67907 -13.48764 -13.21674 -12.96958 -12.84603 -12.59738 -12.40987 -12.31297 -12.13183 -11.63597 -11.10849 -10.97758 -10.91618 -10.79907 -10.71299 -10.02930 -9.79282 -9.57815 -9.48490 -9.41350 -8.92601 -8.84975 -8.31997 -6.26913 -4.30241 -0.06964 0.88082 1.26197 1.98035 2.17625 2.28420 2.96251 3.21266 3.23251 3.30209 3.37992 3.42608 3.75775 4.28358 4.30148 4.44180 4.47973 4.67225 4.74051 4.86151 4.93630 4.99414 5.06653 5.10160 5.15681 5.19693 5.46722 5.50028 5.60429 5.73229 5.84657 6.09958 6.32104 6.68981 6.97050 7.03954 7.27982 7.42965 8.00372 8.37041 8.63212 8.75466 9.31985 10.84768 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.025779 B = 0.002001 C = 0.001881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.874876 B =13992.369842 C =14882.688518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.498 4.498 2 S 1.334 4.666 3 O -0.852 6.852 4 C -0.435 4.435 5 C -0.059 4.059 6 C -0.073 4.073 7 C -0.087 4.087 8 C 0.505 3.495 9 O -0.501 6.501 10 O -0.324 6.324 11 C 0.050 3.950 12 C 0.502 3.498 13 O -0.536 6.536 14 N -0.698 5.698 15 C 0.222 3.778 16 C -0.547 4.547 17 H 0.081 0.919 18 C 0.079 3.921 19 N -0.890 5.890 20 Si 0.877 3.123 21 H -0.272 1.272 22 H -0.282 1.282 23 H -0.261 1.261 24 C -0.073 4.073 25 C -0.067 4.067 26 H 0.083 0.917 27 H 0.107 0.893 28 H 0.113 0.887 29 H 0.148 0.852 30 H 0.146 0.854 31 H 0.101 0.899 32 H 0.102 0.898 33 H 0.399 0.601 34 H 0.028 0.972 35 H 0.023 0.977 36 H 0.269 0.731 37 H 0.147 0.853 38 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.870 -8.472 -32.387 34.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.655 4.655 2 S 1.531 4.469 3 O -0.847 6.847 4 C -0.530 4.530 5 C -0.078 4.078 6 C -0.092 4.092 7 C -0.088 4.088 8 C 0.349 3.651 9 O -0.390 6.390 10 O -0.239 6.239 11 C -0.028 4.028 12 C 0.285 3.715 13 O -0.414 6.414 14 N -0.349 5.349 15 C 0.101 3.899 16 C -0.585 4.585 17 H 0.099 0.901 18 C -0.126 4.126 19 N -0.527 5.527 20 Si 0.703 3.297 21 H -0.198 1.198 22 H -0.208 1.208 23 H -0.185 1.185 24 C -0.092 4.092 25 C -0.086 4.086 26 H 0.103 0.897 27 H 0.126 0.874 28 H 0.131 0.869 29 H 0.165 0.835 30 H 0.163 0.837 31 H 0.119 0.881 32 H 0.120 0.880 33 H 0.233 0.767 34 H 0.046 0.954 35 H 0.041 0.959 36 H 0.078 0.922 37 H 0.165 0.835 38 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -7.285 -7.642 -33.032 34.678 hybrid contribution -0.850 1.582 2.244 2.874 sum -8.135 -6.060 -30.788 32.416 Atomic orbital electron populations 1.27757 1.21919 1.08226 1.07595 1.69610 0.86272 0.99769 0.91281 1.93145 1.73185 1.37166 1.81214 1.28059 1.08596 0.99734 1.16653 1.20794 0.96566 0.93663 0.96742 1.21409 0.95944 1.00192 0.91627 1.19338 1.04211 0.94771 0.90485 1.21220 0.73903 0.84270 0.85674 1.90843 1.46815 1.17349 1.83999 1.86595 1.80212 1.39038 1.18011 1.22883 1.03681 0.96272 0.79916 1.19895 0.78756 0.89447 0.83391 1.90705 1.50207 1.22035 1.78458 1.46063 1.68979 1.12364 1.07475 1.19566 0.96899 0.85900 0.87584 1.21056 1.50463 0.96083 0.90869 0.90097 1.24785 0.93826 0.99178 0.94770 1.69872 1.46832 1.35771 1.00202 0.86817 0.78808 0.85051 0.79024 1.19786 1.20795 1.18489 1.21752 0.94633 0.94920 0.97889 1.21169 0.95422 1.00141 0.91860 0.89732 0.87405 0.86850 0.83466 0.83671 0.88052 0.88017 0.76656 0.95391 0.95862 0.92155 0.83477 0.84574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.50 -1.85 10.70 101.05 1.08 -0.77 16 2 S 1.33 6.04 14.18 -107.50 -1.52 4.51 16 3 O -0.85 -9.90 16.88 -35.23 -0.59 -10.50 16 4 C -0.43 -3.09 5.62 -39.49 -0.22 -3.31 16 5 C -0.06 -0.31 9.73 -39.64 -0.39 -0.70 16 6 C -0.07 -0.59 9.60 -39.17 -0.38 -0.97 16 7 C -0.09 -0.97 5.87 -104.98 -0.62 -1.59 16 8 C 0.51 6.82 7.90 34.61 0.27 7.09 16 9 O -0.50 -7.27 16.14 -19.24 -0.31 -7.58 16 10 O -0.32 -4.93 9.01 -47.21 -0.43 -5.36 16 11 C 0.05 0.72 5.95 36.01 0.21 0.93 16 12 C 0.50 9.48 7.91 -10.98 -0.09 9.40 16 13 O -0.54 -12.30 16.50 -14.11 -0.23 -12.53 16 14 N -0.70 -13.75 5.55 -61.47 -0.34 -14.09 16 15 C 0.22 5.37 4.50 -5.19 -0.02 5.35 16 16 C -0.55 -14.77 9.83 -34.44 -0.34 -15.11 16 17 H 0.08 2.26 7.84 -52.49 -0.41 1.85 16 18 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 19 N -0.89 -26.16 13.96 55.43 0.77 -25.39 16 20 Si 0.88 21.25 27.47 -169.99 -4.67 16.58 16 21 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 22 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 23 H -0.26 -6.28 6.54 56.52 0.37 -5.91 16 24 C -0.07 -0.82 9.62 -39.17 -0.38 -1.19 16 25 C -0.07 -0.68 9.42 -39.64 -0.37 -1.05 16 26 H 0.08 0.51 8.14 -51.92 -0.42 0.09 16 27 H 0.11 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.11 0.17 8.14 -51.92 -0.42 -0.26 16 29 H 0.15 0.06 8.06 -52.49 -0.42 -0.36 16 30 H 0.15 1.02 7.65 -52.49 -0.40 0.61 16 31 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 32 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 33 H 0.40 6.74 8.32 -40.82 -0.34 6.40 16 34 H 0.03 0.71 7.20 -51.93 -0.37 0.34 16 35 H 0.02 0.59 7.57 -51.93 -0.39 0.19 16 36 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 37 H 0.15 1.75 7.61 -52.48 -0.40 1.35 16 38 H 0.14 1.47 7.44 -52.49 -0.39 1.08 16 LS Contribution 353.25 15.07 5.32 5.32 Total: -1.00 -39.58 353.25 -7.74 -47.32 By element: Atomic # 1 Polarization: 5.95 SS G_CDS: -4.41 Total: 1.54 kcal Atomic # 6 Polarization: 1.50 SS G_CDS: -1.33 Total: 0.17 kcal Atomic # 7 Polarization: -39.91 SS G_CDS: 0.43 Total: -39.48 kcal Atomic # 8 Polarization: -34.41 SS G_CDS: -1.56 Total: -35.97 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -4.67 Total: 16.58 kcal Atomic # 16 Polarization: 6.04 SS G_CDS: -1.52 Total: 4.51 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -39.58 -7.74 -47.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000917353146.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.487 kcal (2) G-P(sol) polarization free energy of solvation -39.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds