Wall clock time and date at job start Fri Apr 10 2020 14:46:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34717 * 117.00123 * 2 1 4 4 O 1.21471 * 120.00021 * 0.02562 * 3 2 1 5 5 C 1.47726 * 120.00029 * 179.97438 * 3 2 1 6 6 C 1.39657 * 120.24771 * 0.02562 * 5 3 2 7 7 C 1.37645 * 119.55681 * 180.24303 * 6 5 3 8 8 C 1.39003 * 120.72419 * 359.97438 * 7 6 5 9 9 C 1.37853 * 120.07498 * 359.46425 * 8 7 6 10 10 C 1.38698 * 119.66663 * 0.80605 * 9 8 7 11 11 C 1.50631 * 122.83183 * 181.50523 * 9 8 7 12 12 C 1.52772 * 110.87241 * 339.40529 * 11 9 8 13 13 N 1.47216 * 107.92664 * 47.54049 * 12 11 9 14 14 S 1.65599 * 121.32585 * 115.80115 * 13 12 11 15 15 O 1.42097 * 106.40278 * 203.53928 * 14 13 12 16 16 O 1.42098 * 106.39931 * 336.45716 * 14 13 12 17 17 C 1.76193 * 107.21765 * 89.99666 * 14 13 12 18 18 H 1.08000 * 120.00180 * 0.02562 * 17 14 13 19 19 C 1.37879 * 119.99954 * 179.97438 * 17 14 13 20 20 N 1.31522 * 119.99766 * 0.02562 * 19 17 14 21 21 Si 1.86802 * 120.00232 * 180.02562 * 19 17 14 22 22 H 1.48495 * 109.47076 * 90.00402 * 21 19 17 23 23 H 1.48502 * 109.47166 * 210.00826 * 21 19 17 24 24 H 1.48500 * 109.46941 * 330.00358 * 21 19 17 25 25 C 1.46661 * 117.35338 * 295.82319 * 13 12 11 26 26 H 1.09002 * 109.47055 * 300.00292 * 1 2 3 27 27 H 1.09006 * 109.47201 * 59.99900 * 1 2 3 28 28 H 1.08992 * 109.47420 * 180.02562 * 1 2 3 29 29 H 1.08002 * 120.21880 * 0.52170 * 6 5 3 30 30 H 1.07997 * 119.63738 * 180.02562 * 7 6 5 31 31 H 1.07997 * 119.76999 * 179.45299 * 10 9 8 32 32 H 1.09007 * 109.19376 * 99.76077 * 11 9 8 33 33 H 1.08995 * 109.20154 * 219.04535 * 11 9 8 34 34 H 1.09005 * 109.76656 * 167.14270 * 12 11 9 35 35 H 1.08992 * 109.77214 * 287.87722 * 12 11 9 36 36 H 0.97005 * 119.99516 * 179.97438 * 20 19 17 37 37 H 1.09007 * 109.43289 * 284.49868 * 25 13 12 38 38 H 1.09008 * 109.43430 * 164.64425 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0636 1.2003 0.0000 4 8 1.4020 2.2191 0.0005 5 6 3.5388 1.2776 0.0006 6 6 4.3045 0.1096 0.0006 7 6 5.6780 0.1982 0.0062 8 6 6.3098 1.4364 0.0113 9 6 5.5613 2.5939 -0.0003 10 6 4.1765 2.5160 -0.0002 11 6 6.1807 3.9667 -0.0289 12 6 7.6274 3.9214 0.4599 13 7 8.3037 2.8097 -0.2285 14 16 9.5625 3.0802 -1.2699 15 8 9.6100 1.9591 -2.1417 16 8 9.4221 4.4172 -1.7302 17 6 11.0451 3.0344 -0.3191 18 1 10.9991 2.8524 0.7445 19 6 12.2641 3.2298 -0.9330 20 7 12.3201 3.4508 -2.2283 21 14 13.8361 3.1805 0.0749 22 1 14.3573 1.7905 0.1114 23 1 14.8490 4.0730 -0.5437 24 1 13.5516 3.6390 1.4584 25 6 7.8180 1.4530 0.0443 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 3.8220 -0.8566 -0.0083 30 1 6.2714 -0.7041 0.0058 31 1 3.5885 3.4219 -0.0004 32 1 6.1590 4.3485 -1.0497 33 1 5.6058 4.6328 0.6143 34 1 8.1266 4.8607 0.2217 35 1 7.6476 3.7560 1.5370 36 1 13.1777 3.5887 -2.6601 37 1 8.1628 1.1353 1.0284 38 1 8.2048 0.7703 -0.7124 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192950636.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:46:25 Heat of formation + Delta-G solvation = -174.746644 kcal Electronic energy + Delta-G solvation = -25109.408766 eV Core-core repulsion = 21235.086041 eV Total energy + Delta-G solvation = -3874.322724 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.72286 -40.61897 -37.70276 -37.48561 -37.27131 -36.13613 -35.15897 -33.84847 -32.59419 -30.34139 -28.86119 -28.23609 -26.49230 -24.77283 -23.68081 -22.83773 -21.13469 -20.64599 -19.23930 -18.53274 -18.17728 -18.11074 -17.41107 -17.21864 -17.04285 -16.44017 -15.87985 -15.79039 -15.55245 -15.47330 -15.03789 -14.57945 -14.45716 -14.27613 -14.00830 -13.76412 -13.43308 -13.32468 -13.22034 -13.01472 -13.00290 -12.81037 -12.59130 -12.48885 -12.29755 -12.28705 -12.02234 -11.83484 -11.79938 -11.54085 -11.24079 -10.97693 -10.05448 -9.74821 -9.68098 -8.73794 -7.47680 -0.39491 0.26736 0.32416 1.35739 1.35813 1.41415 1.52129 1.64522 2.21426 2.58692 2.67437 2.80289 3.53755 3.64782 3.75364 3.80796 3.88223 4.04405 4.19588 4.24967 4.28219 4.33876 4.34351 4.46424 4.52968 4.59567 4.70774 4.71834 4.76887 4.86906 4.92557 5.10038 5.15361 5.17317 5.24491 5.30191 5.35186 5.60505 5.82059 5.89862 5.92585 6.62211 6.79325 8.21358 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.034522 B = 0.002904 C = 0.002832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.875280 B = 9639.689026 C = 9883.815891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.354 6.354 3 C 0.515 3.485 4 O -0.538 6.538 5 C -0.147 4.147 6 C -0.056 4.056 7 C -0.125 4.125 8 C -0.057 4.057 9 C -0.089 4.089 10 C -0.057 4.057 11 C -0.097 4.097 12 C 0.118 3.882 13 N -1.011 6.011 14 S 2.720 3.280 15 O -1.038 7.038 16 O -1.038 7.038 17 C -1.037 5.037 18 H 0.122 0.878 19 C 0.069 3.931 20 N -0.895 5.895 21 Si 0.990 3.010 22 H -0.254 1.254 23 H -0.265 1.265 24 H -0.247 1.247 25 C 0.149 3.851 26 H 0.064 0.936 27 H 0.061 0.939 28 H 0.136 0.864 29 H 0.164 0.836 30 H 0.161 0.839 31 H 0.139 0.861 32 H 0.068 0.932 33 H 0.116 0.884 34 H 0.084 0.916 35 H 0.098 0.902 36 H 0.298 0.702 37 H 0.108 0.892 38 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.903 -7.955 9.700 21.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.270 6.270 3 C 0.362 3.638 4 O -0.429 6.429 5 C -0.148 4.148 6 C -0.074 4.074 7 C -0.143 4.143 8 C -0.059 4.059 9 C -0.089 4.089 10 C -0.075 4.075 11 C -0.136 4.136 12 C -0.007 4.007 13 N -0.849 5.849 14 S 2.823 3.177 15 O -1.029 7.029 16 O -1.028 7.028 17 C -1.171 5.171 18 H 0.140 0.860 19 C -0.143 4.143 20 N -0.527 5.527 21 Si 0.808 3.192 22 H -0.178 1.178 23 H -0.189 1.189 24 H -0.170 1.170 25 C 0.024 3.976 26 H 0.082 0.918 27 H 0.080 0.920 28 H 0.154 0.846 29 H 0.182 0.818 30 H 0.178 0.822 31 H 0.156 0.844 32 H 0.087 0.913 33 H 0.134 0.866 34 H 0.103 0.897 35 H 0.116 0.884 36 H 0.109 0.891 37 H 0.126 0.874 38 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -17.163 -7.484 8.577 20.595 hybrid contribution 0.847 0.307 0.356 0.969 sum -16.316 -7.177 8.932 19.937 Atomic orbital electron populations 1.23608 0.74185 1.06009 1.02626 1.86532 1.25298 1.31416 1.83774 1.21309 0.89232 0.81548 0.71729 1.90810 1.67441 1.37057 1.47639 1.19079 0.88883 0.95595 1.11210 1.21557 0.93287 0.98322 0.94188 1.21363 0.94813 0.97482 1.00665 1.20389 0.95636 0.93831 0.96059 1.19540 0.92604 0.95500 1.01292 1.21303 0.93502 0.97341 0.95397 1.20884 0.96038 0.93616 1.03020 1.21494 0.91924 0.89211 0.98057 1.57791 1.50316 1.12737 1.64037 0.99976 0.73302 0.71490 0.72898 1.93287 1.88068 1.55283 1.66230 1.93296 1.87803 1.40460 1.81225 1.30967 1.11910 1.64373 1.09812 0.86021 1.26033 1.04812 0.87735 0.95769 1.70000 1.30882 1.40213 1.11608 0.85127 0.75073 0.79830 0.79140 1.17781 1.18948 1.17011 1.20451 0.90042 0.83377 1.03735 0.91753 0.92023 0.84560 0.81834 0.82153 0.84354 0.91345 0.86560 0.89712 0.88382 0.89145 0.87411 0.88622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.56 113.37 1.20 1.56 16 2 O -0.35 -6.75 9.83 -56.27 -0.55 -7.30 16 3 C 0.51 12.47 7.90 70.33 0.56 13.02 16 4 O -0.54 -15.66 16.13 19.93 0.32 -15.34 16 5 C -0.15 -3.49 5.86 -20.17 -0.12 -3.61 16 6 C -0.06 -1.11 9.62 22.47 0.22 -0.89 16 7 C -0.13 -2.69 9.60 22.31 0.21 -2.47 16 8 C -0.06 -1.57 5.83 -19.72 -0.12 -1.69 16 9 C -0.09 -2.44 5.76 -19.87 -0.11 -2.56 16 10 C -0.06 -1.46 9.14 22.63 0.21 -1.25 16 11 C -0.10 -2.67 5.86 29.75 0.17 -2.50 16 12 C 0.12 3.72 6.41 86.17 0.55 4.27 16 13 N -1.01 -39.08 3.26 -517.87 -1.69 -40.76 16 14 S 2.72 143.43 5.03 -56.49 -0.28 143.15 16 15 O -1.04 -60.60 16.65 -128.00 -2.13 -62.73 16 16 O -1.04 -60.84 16.78 -128.00 -2.15 -62.99 16 17 C -1.04 -55.48 9.75 67.73 0.66 -54.82 16 18 H 0.12 5.80 7.81 -2.91 -0.02 5.78 16 19 C 0.07 3.78 5.46 84.65 0.46 4.24 16 20 N -0.90 -52.91 13.19 21.45 0.28 -52.63 16 21 Si 0.99 40.33 29.54 68.60 2.03 42.36 16 22 H -0.25 -9.72 7.11 99.48 0.71 -9.01 16 23 H -0.27 -10.27 7.11 99.48 0.71 -9.57 16 24 H -0.25 -9.34 7.11 99.48 0.71 -8.63 16 25 C 0.15 4.68 6.30 85.65 0.54 5.22 16 26 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 28 H 0.14 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.16 2.35 7.63 -2.91 -0.02 2.33 16 30 H 0.16 2.57 8.05 -2.91 -0.02 2.55 16 31 H 0.14 3.35 7.62 -2.91 -0.02 3.33 16 32 H 0.07 2.09 8.14 -2.38 -0.02 2.08 16 33 H 0.12 2.38 8.10 -2.39 -0.02 2.36 16 34 H 0.08 2.91 7.16 -2.38 -0.02 2.89 16 35 H 0.10 2.46 8.14 -2.39 -0.02 2.44 16 36 H 0.30 15.85 8.31 -92.70 -0.77 15.08 16 37 H 0.11 2.73 8.14 -2.38 -0.02 2.71 16 38 H 0.10 3.27 6.95 -2.38 -0.02 3.25 16 Total: -1.00 -79.17 340.26 1.35 -77.82 By element: Atomic # 1 Polarization: 18.80 SS G_CDS: 1.09 Total: 19.89 kcal Atomic # 6 Polarization: -45.90 SS G_CDS: 4.43 Total: -41.47 kcal Atomic # 7 Polarization: -91.99 SS G_CDS: -1.40 Total: -93.39 kcal Atomic # 8 Polarization: -143.85 SS G_CDS: -4.51 Total: -148.36 kcal Atomic # 14 Polarization: 40.33 SS G_CDS: 2.03 Total: 42.36 kcal Atomic # 16 Polarization: 143.43 SS G_CDS: -0.28 Total: 143.15 kcal Total: -79.17 1.35 -77.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192950636.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.926 kcal (2) G-P(sol) polarization free energy of solvation -79.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds