Wall clock time and date at job start Fri Apr 10 2020 14:47:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34230 * 116.99897 * 2 1 4 4 O 1.20821 * 120.00031 * 359.97438 * 3 2 1 5 5 C 1.50706 * 119.99721 * 179.97438 * 3 2 1 6 6 H 1.09003 * 109.80908 * 69.54356 * 5 3 2 7 7 C 1.52782 * 109.77111 * 190.31643 * 5 3 2 8 8 C 1.50597 * 110.86398 * 167.06089 * 7 5 3 9 9 C 1.38982 * 117.62780 * 159.95916 * 8 7 5 10 10 C 1.37906 * 120.58493 * 179.50153 * 9 8 7 11 11 C 1.38259 * 119.82873 * 359.92887 * 10 9 8 12 12 C 1.37969 * 119.71491 * 0.25711 * 11 10 9 13 13 C 1.37667 * 122.85934 * 339.85089 * 8 7 5 14 14 C 1.50402 * 122.32489 * 1.25705 * 13 8 7 15 15 N 1.46689 * 109.89779 * 348.77827 * 14 13 8 16 16 S 1.65605 * 121.33517 * 224.33513 * 15 14 13 17 17 O 1.42092 * 106.40261 * 15.36114 * 16 15 14 18 18 O 1.42104 * 106.39668 * 148.28489 * 16 15 14 19 19 C 1.76205 * 107.21675 * 261.82054 * 16 15 14 20 20 H 1.07998 * 119.99722 * 0.02562 * 19 16 15 21 21 C 1.37874 * 119.99790 * 180.02562 * 19 16 15 22 22 N 1.31508 * 120.00090 * 359.97438 * 21 19 16 23 23 Si 1.86805 * 119.99873 * 180.02562 * 21 19 16 24 24 H 1.48498 * 109.47167 * 59.99676 * 23 21 19 25 25 H 1.48493 * 109.46989 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.46927 * 299.99895 * 23 21 19 27 27 H 1.09006 * 109.46783 * 60.00269 * 1 2 3 28 28 H 1.08998 * 109.47041 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47301 * 300.00438 * 1 2 3 30 30 H 1.09012 * 109.19591 * 287.41170 * 7 5 3 31 31 H 1.08992 * 109.20271 * 46.69999 * 7 5 3 32 32 H 1.08001 * 119.70365 * 359.50304 * 9 8 7 33 33 H 1.07995 * 120.08496 * 179.97438 * 10 9 8 34 34 H 1.07994 * 120.14655 * 180.22932 * 11 10 9 35 35 H 1.08002 * 119.74597 * 180.02562 * 12 11 10 36 36 H 1.08998 * 109.40158 * 228.60112 * 14 13 8 37 37 H 1.09004 * 109.25224 * 108.86284 * 14 13 8 38 38 H 0.96999 * 120.00148 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5664 1.2748 0.0006 6 1 3.9544 0.9360 -0.9600 7 6 4.0084 2.7145 0.2579 8 6 5.4791 2.7753 0.5758 9 6 6.1229 3.9968 0.4170 10 6 7.4665 4.1239 0.7005 11 6 8.1816 3.0285 1.1481 12 6 7.5460 1.8138 1.3030 13 6 6.1947 1.6833 1.0125 14 6 5.5681 0.3266 1.1821 15 7 4.1087 0.4346 1.0812 16 16 3.1113 -0.3513 2.1442 17 8 3.9249 -0.7474 3.2398 18 8 1.9564 0.4640 2.2884 19 6 2.5776 -1.8355 1.3586 20 1 2.9163 -2.0699 0.3603 21 6 1.7276 -2.6975 2.0185 22 7 1.3156 -2.4123 3.2343 23 14 1.1624 -4.2714 1.1859 24 1 2.3432 -5.1109 0.8606 25 1 0.2610 -5.0184 2.0995 26 1 0.4340 -3.9360 -0.0640 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 3.8084 3.3149 -0.6296 31 1 3.4431 3.1183 1.0978 32 1 5.5659 4.8539 0.0686 33 1 7.9587 5.0768 0.5738 34 1 9.2331 3.1232 1.3752 35 1 8.1040 0.9579 1.6531 36 1 5.8352 -0.0760 2.1592 37 1 5.9373 -0.3399 0.4026 38 1 0.7173 -3.0185 3.6984 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192963170.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:47:25 Heat of formation + Delta-G solvation = -131.687760 kcal Electronic energy + Delta-G solvation = -27139.390234 eV Core-core repulsion = 23266.934683 eV Total energy + Delta-G solvation = -3872.455551 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.28813 -39.33940 -36.34113 -35.63482 -35.31444 -34.05946 -33.07343 -32.59226 -31.10507 -29.42022 -27.06136 -26.11806 -24.80138 -24.24698 -22.12311 -20.75175 -19.99312 -18.71952 -17.77290 -16.76018 -16.70795 -16.44683 -15.85256 -15.35114 -15.15393 -14.93541 -14.66283 -14.36620 -14.07218 -13.85205 -13.51129 -13.15545 -13.06637 -12.68474 -12.49291 -12.21560 -12.05173 -11.95471 -11.51174 -11.33877 -11.23532 -11.15455 -10.99065 -10.86655 -10.63393 -10.44735 -10.36681 -10.19724 -9.86149 -9.77712 -9.19862 -9.06236 -8.69789 -8.48852 -8.34927 -6.68069 -5.21529 1.44170 1.44794 2.05741 2.79450 3.06377 3.12389 3.17605 3.35219 3.81883 4.02803 4.32446 4.64282 4.83750 4.88723 4.98663 5.09313 5.11445 5.30518 5.43989 5.49284 5.56158 5.70564 5.77190 5.82581 5.87504 5.96528 6.05343 6.08196 6.09147 6.19302 6.28957 6.40552 6.44763 6.55145 6.57502 6.83944 7.08149 7.19347 7.32120 7.35853 8.03844 8.39243 8.91437 10.26200 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.019098 B = 0.005442 C = 0.004668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.781995 B = 5144.129066 C = 5996.899708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.054 3.946 2 O -0.316 6.316 3 C 0.459 3.541 4 O -0.508 6.508 5 C 0.173 3.827 6 H 0.107 0.893 7 C -0.082 4.082 8 C -0.064 4.064 9 C -0.119 4.119 10 C -0.125 4.125 11 C -0.124 4.124 12 C -0.114 4.114 13 C -0.084 4.084 14 C 0.159 3.841 15 N -1.006 6.006 16 S 2.709 3.291 17 O -1.000 7.000 18 O -0.992 6.992 19 C -0.980 4.980 20 H 0.106 0.894 21 C 0.134 3.866 22 N -0.850 5.850 23 Si 0.916 3.084 24 H -0.265 1.265 25 H -0.279 1.279 26 H -0.264 1.264 27 H 0.045 0.955 28 H 0.092 0.908 29 H 0.069 0.931 30 H 0.090 0.910 31 H 0.094 0.906 32 H 0.121 0.879 33 H 0.119 0.881 34 H 0.120 0.880 35 H 0.125 0.875 36 H 0.111 0.889 37 H 0.079 0.921 38 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.115 6.506 -8.282 13.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 O -0.230 6.230 3 C 0.301 3.699 4 O -0.396 6.396 5 C 0.065 3.935 6 H 0.125 0.875 7 C -0.120 4.120 8 C -0.065 4.065 9 C -0.137 4.137 10 C -0.143 4.143 11 C -0.142 4.142 12 C -0.133 4.133 13 C -0.086 4.086 14 C 0.034 3.966 15 N -0.842 5.842 16 S 2.812 3.188 17 O -0.991 6.991 18 O -0.982 6.982 19 C -1.115 5.115 20 H 0.124 0.876 21 C -0.083 4.083 22 N -0.481 5.481 23 Si 0.740 3.260 24 H -0.189 1.189 25 H -0.204 1.204 26 H -0.188 1.188 27 H 0.064 0.936 28 H 0.110 0.890 29 H 0.087 0.913 30 H 0.108 0.892 31 H 0.112 0.888 32 H 0.139 0.861 33 H 0.137 0.863 34 H 0.138 0.862 35 H 0.143 0.857 36 H 0.129 0.871 37 H 0.097 0.903 38 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 7.540 7.071 -7.233 12.616 hybrid contribution -0.463 -1.126 -0.822 1.469 sum 7.077 5.945 -8.055 12.260 Atomic orbital electron populations 1.23004 0.76769 1.02953 1.01259 1.86847 1.23468 1.30260 1.82412 1.23138 0.90906 0.83162 0.72680 1.90561 1.66343 1.36727 1.45956 1.20389 0.87067 0.92206 0.93820 0.87501 1.20680 0.92156 0.95265 1.03921 1.19441 0.94956 0.93137 0.98941 1.21135 0.94817 0.96820 1.00941 1.21002 0.94349 0.98612 1.00341 1.21022 0.99720 0.93063 1.00433 1.21078 0.93827 0.98094 1.00298 1.19927 0.94007 0.95714 0.98951 1.20120 0.79327 0.93147 1.04010 1.58517 1.15903 1.63566 1.46194 1.00813 0.71343 0.74899 0.71769 1.93349 1.70221 1.83915 1.51602 1.93335 1.48806 1.71186 1.84849 1.30278 1.41493 1.25637 1.14090 0.87610 1.24674 0.91835 0.98387 0.93440 1.69894 1.29299 1.37835 1.11068 0.86278 0.79140 0.80807 0.79731 1.18925 1.20390 1.18830 0.93590 0.88983 0.91258 0.89164 0.88797 0.86092 0.86299 0.86163 0.85657 0.87138 0.90269 0.90005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.06 10.32 101.05 1.04 2.10 16 2 O -0.32 -6.91 5.78 -46.98 -0.27 -7.18 16 3 C 0.46 9.63 5.00 36.01 0.18 9.81 16 4 O -0.51 -11.20 15.67 -20.24 -0.32 -11.51 16 5 C 0.17 3.11 3.38 -68.79 -0.23 2.88 16 6 H 0.11 1.55 8.14 -51.93 -0.42 1.13 16 7 C -0.08 -1.31 4.64 -28.05 -0.13 -1.44 16 8 C -0.06 -0.96 5.76 -104.61 -0.60 -1.56 16 9 C -0.12 -1.50 9.59 -39.43 -0.38 -1.87 16 10 C -0.13 -1.40 10.04 -39.70 -0.40 -1.80 16 11 C -0.12 -1.40 10.05 -39.67 -0.40 -1.80 16 12 C -0.11 -1.46 9.62 -39.46 -0.38 -1.84 16 13 C -0.08 -1.28 5.81 -104.75 -0.61 -1.89 16 14 C 0.16 2.69 6.28 -5.24 -0.03 2.65 16 15 N -1.01 -20.33 3.26 -109.42 -0.36 -20.69 16 16 S 2.71 70.26 4.40 -107.50 -0.47 69.79 16 17 O -1.00 -28.63 16.51 -57.17 -0.94 -29.57 16 18 O -0.99 -27.80 13.94 -67.35 -0.94 -28.74 16 19 C -0.98 -25.38 7.24 30.60 0.22 -25.16 16 20 H 0.11 2.52 7.79 -52.49 -0.41 2.11 16 21 C 0.13 3.52 5.46 -17.82 -0.10 3.42 16 22 N -0.85 -23.96 13.19 55.43 0.73 -23.22 16 23 Si 0.92 19.64 29.54 -169.99 -5.02 14.62 16 24 H -0.26 -5.54 7.11 56.52 0.40 -5.14 16 25 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 26 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 27 H 0.05 0.75 8.13 -51.93 -0.42 0.33 16 28 H 0.09 1.67 8.14 -51.93 -0.42 1.24 16 29 H 0.07 1.48 8.10 -51.93 -0.42 1.05 16 30 H 0.09 1.20 8.10 -51.92 -0.42 0.78 16 31 H 0.09 1.69 7.81 -51.93 -0.41 1.29 16 32 H 0.12 1.28 8.05 -52.49 -0.42 0.85 16 33 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 34 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 35 H 0.13 1.34 8.05 -52.49 -0.42 0.92 16 36 H 0.11 1.97 6.84 -51.93 -0.36 1.62 16 37 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.29 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 328.56 15.07 4.95 4.95 Total: -1.00 -34.25 328.56 -8.98 -43.23 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: -4.53 Total: 4.82 kcal Atomic # 6 Polarization: -14.68 SS G_CDS: -1.82 Total: -16.49 kcal Atomic # 7 Polarization: -44.29 SS G_CDS: 0.37 Total: -43.91 kcal Atomic # 8 Polarization: -74.53 SS G_CDS: -2.47 Total: -77.00 kcal Atomic # 14 Polarization: 19.64 SS G_CDS: -5.02 Total: 14.62 kcal Atomic # 16 Polarization: 70.26 SS G_CDS: -0.47 Total: 69.79 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -34.25 -8.98 -43.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192963170.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.453 kcal (2) G-P(sol) polarization free energy of solvation -34.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds