Wall clock time and date at job start Fri Apr 10 2020 14:47:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34235 * 116.99607 * 2 1 4 4 O 1.20820 * 120.00122 * 359.97438 * 3 2 1 5 5 C 1.50705 * 119.99549 * 179.97438 * 3 2 1 6 6 H 1.09007 * 110.73032 * 61.96332 * 5 3 2 7 7 C 1.54340 * 110.82766 * 298.54691 * 5 3 2 8 8 C 1.51391 * 105.16925 * 215.45674 * 7 5 3 9 9 C 1.38564 * 130.34881 * 197.15259 * 8 7 5 10 10 C 1.38146 * 120.37721 * 180.02562 * 9 8 7 11 11 C 1.38120 * 120.01842 * 359.95614 * 10 9 8 12 12 C 1.38789 * 119.84697 * 0.02562 * 11 10 9 13 13 N 1.39672 * 119.96715 * 180.02562 * 12 11 10 14 14 S 1.65595 * 120.00506 * 327.70422 * 13 12 11 15 15 O 1.42105 * 106.40338 * 314.12168 * 14 13 12 16 16 O 1.42096 * 106.40858 * 181.19972 * 14 13 12 17 17 C 1.76201 * 107.21916 * 67.65622 * 14 13 12 18 18 H 1.08003 * 119.99468 * 0.02562 * 17 14 13 19 19 C 1.37872 * 120.00222 * 180.27602 * 17 14 13 20 20 N 1.31511 * 120.00068 * 359.73021 * 19 17 14 21 21 Si 1.86801 * 120.00151 * 179.72736 * 19 17 14 22 22 H 1.48503 * 109.47057 * 90.00160 * 21 19 17 23 23 H 1.48497 * 109.47288 * 210.00302 * 21 19 17 24 24 H 1.48500 * 109.47243 * 330.00304 * 21 19 17 25 25 C 1.38081 * 109.75934 * 17.40867 * 8 7 5 26 26 C 1.51362 * 109.79758 * 359.63365 * 25 8 7 27 27 H 1.08996 * 109.46505 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47016 * 300.00248 * 1 2 3 29 29 H 1.09000 * 109.46852 * 60.00137 * 1 2 3 30 30 H 1.08997 * 110.30919 * 96.53259 * 7 5 3 31 31 H 1.08997 * 110.30398 * 334.38003 * 7 5 3 32 32 H 1.07996 * 119.81181 * 0.02910 * 9 8 7 33 33 H 1.08000 * 119.99402 * 179.97438 * 10 9 8 34 34 H 1.08000 * 120.07652 * 180.02562 * 11 10 9 35 35 H 0.97006 * 119.99723 * 147.70725 * 13 12 11 36 36 H 0.97005 * 120.00374 * 180.02562 * 20 19 17 37 37 H 1.09005 * 110.44383 * 224.14965 * 26 25 8 38 38 H 1.09006 * 110.19521 * 102.07392 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5664 1.2749 0.0006 6 1 3.9771 0.8164 -0.8990 7 6 4.1500 0.6155 1.2681 8 6 5.3611 1.4499 1.6270 9 6 6.4340 1.1638 2.4559 10 6 7.4417 2.0908 2.6392 11 6 7.3843 3.3107 1.9940 12 6 6.3121 3.6024 1.1624 13 7 6.2517 4.8350 0.5083 14 16 6.8859 6.1856 1.2265 15 8 6.4328 6.1742 2.5733 16 8 6.6450 7.2652 0.3346 17 6 8.6338 5.9716 1.2881 18 1 9.0820 5.0723 0.8919 19 6 9.4289 6.9498 1.8465 20 7 8.8832 8.0449 2.3285 21 14 11.2813 6.7195 1.9186 22 1 11.8971 7.2719 0.6854 23 1 11.8228 7.4313 3.1040 24 1 11.5965 5.2721 2.0237 25 6 5.2945 2.6700 0.9839 26 6 4.0391 2.7375 0.1410 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 4.4474 -0.4117 1.0574 31 1 3.4203 0.6403 2.0775 32 1 6.4827 0.2108 2.9614 33 1 8.2749 1.8615 3.2870 34 1 8.1718 4.0359 2.1364 35 1 5.8382 4.8999 -0.3668 36 1 9.4426 8.7334 2.7211 37 1 4.2609 3.1591 -0.8394 38 1 3.2789 3.3340 0.6454 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192987637.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:47:22 Heat of formation + Delta-G solvation = -153.345153 kcal Electronic energy + Delta-G solvation = -25338.410393 eV Core-core repulsion = 21465.015706 eV Total energy + Delta-G solvation = -3873.394686 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.01180 -39.71117 -36.88396 -35.94500 -35.26120 -34.25707 -34.09565 -33.19104 -29.82257 -29.36790 -27.72930 -27.03603 -26.20045 -23.77872 -21.31699 -21.18324 -20.23243 -18.87268 -17.90597 -17.66689 -17.20673 -16.90469 -16.50031 -16.15259 -15.40696 -15.09847 -14.85251 -14.47634 -14.05961 -13.90598 -13.54734 -13.30554 -13.24435 -12.93827 -12.66267 -12.39629 -12.27016 -12.11888 -11.67549 -11.44160 -11.41228 -11.27385 -11.05552 -11.02434 -10.89829 -10.64993 -10.60729 -10.53175 -10.42720 -10.31451 -10.07577 -9.32066 -8.90431 -8.26815 -7.64502 -6.79885 -5.43960 1.65605 1.74677 1.98371 2.12765 2.45000 3.02340 3.09661 3.15228 3.97159 4.05469 4.16906 4.39407 4.53644 4.56515 4.67361 4.83359 4.90865 4.94214 5.05473 5.16978 5.27149 5.41704 5.54803 5.58652 5.61818 5.69659 5.75751 5.93266 6.00734 6.07618 6.15862 6.23765 6.43302 6.57695 6.72161 6.89648 6.97761 7.19906 7.31631 7.52284 7.77565 7.83495 8.77093 10.14195 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.023753 B = 0.003466 C = 0.003145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.500165 B = 8076.881631 C = 8901.142505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.358 6.358 3 C 0.471 3.529 4 O -0.500 6.500 5 C -0.083 4.083 6 H 0.122 0.878 7 C -0.061 4.061 8 C -0.082 4.082 9 C -0.138 4.138 10 C -0.084 4.084 11 C -0.167 4.167 12 C 0.215 3.785 13 N -1.070 6.070 14 S 2.701 3.299 15 O -0.989 6.989 16 O -0.998 6.998 17 C -1.022 5.022 18 H 0.110 0.890 19 C 0.134 3.866 20 N -0.840 5.840 21 Si 0.922 3.078 22 H -0.266 1.266 23 H -0.274 1.274 24 H -0.260 1.260 25 C -0.139 4.139 26 C -0.063 4.063 27 H 0.101 0.899 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.117 0.883 33 H 0.128 0.872 34 H 0.164 0.836 35 H 0.411 0.589 36 H 0.293 0.707 37 H 0.081 0.919 38 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.196 -18.058 -3.526 20.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.274 6.274 3 C 0.313 3.687 4 O -0.387 6.387 5 C -0.102 4.102 6 H 0.139 0.861 7 C -0.099 4.099 8 C -0.083 4.083 9 C -0.157 4.157 10 C -0.103 4.103 11 C -0.188 4.188 12 C 0.116 3.884 13 N -0.811 5.811 14 S 2.802 3.198 15 O -0.979 6.979 16 O -0.988 6.988 17 C -1.155 5.155 18 H 0.128 0.872 19 C -0.085 4.085 20 N -0.469 5.469 21 Si 0.746 3.254 22 H -0.191 1.191 23 H -0.199 1.199 24 H -0.184 1.184 25 C -0.144 4.144 26 C -0.100 4.100 27 H 0.119 0.881 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.106 0.894 31 H 0.101 0.899 32 H 0.135 0.865 33 H 0.146 0.854 34 H 0.181 0.819 35 H 0.244 0.756 36 H 0.104 0.896 37 H 0.099 0.901 38 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -8.904 -16.750 -2.996 19.205 hybrid contribution 1.030 -0.198 -0.505 1.164 sum -7.874 -16.948 -3.501 19.013 Atomic orbital electron populations 1.23280 0.76370 1.03656 1.02668 1.86515 1.23384 1.33395 1.84140 1.23565 0.91723 0.81323 0.72090 1.90691 1.66944 1.36337 1.44690 1.21726 0.86850 0.99540 1.02067 0.86056 1.20862 0.94825 0.98897 0.95267 1.20102 0.95455 0.94786 0.97980 1.20410 0.94452 1.00051 1.00784 1.20829 0.98304 0.92809 0.98337 1.21902 0.98357 0.99435 0.99119 1.16984 0.92279 0.85199 0.93934 1.54268 1.74022 1.22215 1.30597 1.01062 0.76470 0.69747 0.72539 1.93412 1.83455 1.85042 1.35953 1.93394 1.87938 1.50629 1.66853 1.30552 1.17294 1.13775 1.53896 0.87154 1.24755 1.01948 0.92324 0.89467 1.69888 1.38972 1.06765 1.31300 0.86127 0.80947 0.79721 0.78640 1.19130 1.19897 1.18378 1.20094 0.95498 0.95801 1.02988 1.20836 0.95043 0.93744 1.00367 0.88083 0.91818 0.91878 0.89381 0.89905 0.86466 0.85445 0.81862 0.75584 0.89647 0.90067 0.88603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.56 101.05 1.07 1.31 16 2 O -0.36 -3.54 10.55 -39.27 -0.41 -3.95 16 3 C 0.47 5.53 7.17 36.01 0.26 5.79 16 4 O -0.50 -7.39 15.31 -18.74 -0.29 -7.68 16 5 C -0.08 -0.89 3.58 -90.36 -0.32 -1.22 16 6 H 0.12 1.03 8.14 -51.93 -0.42 0.60 16 7 C -0.06 -0.65 6.30 -26.84 -0.17 -0.81 16 8 C -0.08 -1.15 6.13 -104.22 -0.64 -1.79 16 9 C -0.14 -1.88 10.03 -39.49 -0.40 -2.28 16 10 C -0.08 -1.31 10.04 -39.66 -0.40 -1.71 16 11 C -0.17 -3.22 8.89 -39.42 -0.35 -3.57 16 12 C 0.21 4.12 6.21 -83.74 -0.52 3.60 16 13 N -1.07 -21.92 5.75 32.44 0.19 -21.73 16 14 S 2.70 70.96 4.62 -107.50 -0.50 70.46 16 15 O -0.99 -28.76 17.41 -57.17 -1.00 -29.76 16 16 O -1.00 -28.89 18.02 -57.17 -1.03 -29.92 16 17 C -1.02 -26.81 7.56 30.60 0.23 -26.58 16 18 H 0.11 2.61 6.92 -52.48 -0.36 2.25 16 19 C 0.13 3.59 5.46 -17.82 -0.10 3.49 16 20 N -0.84 -24.01 13.19 55.43 0.73 -23.28 16 21 Si 0.92 19.73 29.54 -169.99 -5.02 14.71 16 22 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 23 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 24 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 25 C -0.14 -2.25 6.10 -104.01 -0.63 -2.89 16 26 C -0.06 -0.86 5.87 -26.85 -0.16 -1.02 16 27 H 0.10 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.48 8.13 -51.93 -0.42 0.05 16 29 H 0.06 0.45 8.13 -51.93 -0.42 0.03 16 30 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.08 0.86 7.89 -51.93 -0.41 0.45 16 32 H 0.12 1.24 8.06 -52.49 -0.42 0.81 16 33 H 0.13 1.65 8.06 -52.49 -0.42 1.23 16 34 H 0.16 3.45 4.48 -52.49 -0.23 3.21 16 35 H 0.41 7.14 8.81 -34.47 -0.30 6.83 16 36 H 0.29 7.51 8.31 -40.82 -0.34 7.17 16 37 H 0.08 1.00 8.13 -51.93 -0.42 0.58 16 38 H 0.10 1.47 7.07 -51.93 -0.37 1.10 16 LS Contribution 338.02 15.07 5.09 5.09 Total: -1.00 -35.82 338.02 -8.56 -44.38 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: -4.19 Total: 9.33 kcal Atomic # 6 Polarization: -25.53 SS G_CDS: -2.13 Total: -27.66 kcal Atomic # 7 Polarization: -45.92 SS G_CDS: 0.92 Total: -45.01 kcal Atomic # 8 Polarization: -68.58 SS G_CDS: -2.73 Total: -71.31 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -5.02 Total: 14.71 kcal Atomic # 16 Polarization: 70.96 SS G_CDS: -0.50 Total: 70.46 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -35.82 -8.56 -44.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192987637.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.968 kcal (2) G-P(sol) polarization free energy of solvation -35.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds