Wall clock time and date at job start Fri Apr 10 2020 14:47:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34235 * 116.99607 * 2 1 4 4 O 1.20820 * 120.00122 * 359.97438 * 3 2 1 5 5 C 1.50705 * 119.99549 * 179.97438 * 3 2 1 6 6 H 1.09007 * 110.73032 * 61.96332 * 5 3 2 7 7 C 1.54340 * 110.82766 * 298.54691 * 5 3 2 8 8 C 1.51391 * 105.16925 * 215.45674 * 7 5 3 9 9 C 1.38564 * 130.34881 * 197.15259 * 8 7 5 10 10 C 1.38146 * 120.37721 * 180.02562 * 9 8 7 11 11 C 1.38120 * 120.01842 * 359.95614 * 10 9 8 12 12 C 1.38789 * 119.84697 * 0.02562 * 11 10 9 13 13 N 1.39672 * 119.96715 * 180.02562 * 12 11 10 14 14 S 1.65595 * 120.00506 * 327.70422 * 13 12 11 15 15 O 1.42105 * 106.40338 * 314.12168 * 14 13 12 16 16 O 1.42096 * 106.40858 * 181.19972 * 14 13 12 17 17 C 1.76201 * 107.21916 * 67.65622 * 14 13 12 18 18 H 1.08003 * 119.99468 * 0.02562 * 17 14 13 19 19 C 1.37872 * 120.00222 * 180.27602 * 17 14 13 20 20 N 1.31511 * 120.00068 * 359.73021 * 19 17 14 21 21 Si 1.86801 * 120.00151 * 179.72736 * 19 17 14 22 22 H 1.48503 * 109.47057 * 90.00160 * 21 19 17 23 23 H 1.48497 * 109.47288 * 210.00302 * 21 19 17 24 24 H 1.48500 * 109.47243 * 330.00304 * 21 19 17 25 25 C 1.38081 * 109.75934 * 17.40867 * 8 7 5 26 26 C 1.51362 * 109.79758 * 359.63365 * 25 8 7 27 27 H 1.08996 * 109.46505 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47016 * 300.00248 * 1 2 3 29 29 H 1.09000 * 109.46852 * 60.00137 * 1 2 3 30 30 H 1.08997 * 110.30919 * 96.53259 * 7 5 3 31 31 H 1.08997 * 110.30398 * 334.38003 * 7 5 3 32 32 H 1.07996 * 119.81181 * 0.02910 * 9 8 7 33 33 H 1.08000 * 119.99402 * 179.97438 * 10 9 8 34 34 H 1.08000 * 120.07652 * 180.02562 * 11 10 9 35 35 H 0.97006 * 119.99723 * 147.70725 * 13 12 11 36 36 H 0.97005 * 120.00374 * 180.02562 * 20 19 17 37 37 H 1.09005 * 110.44383 * 224.14965 * 26 25 8 38 38 H 1.09006 * 110.19521 * 102.07392 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5664 1.2749 0.0006 6 1 3.9771 0.8164 -0.8990 7 6 4.1500 0.6155 1.2681 8 6 5.3611 1.4499 1.6270 9 6 6.4340 1.1638 2.4559 10 6 7.4417 2.0908 2.6392 11 6 7.3843 3.3107 1.9940 12 6 6.3121 3.6024 1.1624 13 7 6.2517 4.8350 0.5083 14 16 6.8859 6.1856 1.2265 15 8 6.4328 6.1742 2.5733 16 8 6.6450 7.2652 0.3346 17 6 8.6338 5.9716 1.2881 18 1 9.0820 5.0723 0.8919 19 6 9.4289 6.9498 1.8465 20 7 8.8832 8.0449 2.3285 21 14 11.2813 6.7195 1.9186 22 1 11.8971 7.2719 0.6854 23 1 11.8228 7.4313 3.1040 24 1 11.5965 5.2721 2.0237 25 6 5.2945 2.6700 0.9839 26 6 4.0391 2.7375 0.1410 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 4.4474 -0.4117 1.0574 31 1 3.4203 0.6403 2.0775 32 1 6.4827 0.2108 2.9614 33 1 8.2749 1.8615 3.2870 34 1 8.1718 4.0359 2.1364 35 1 5.8382 4.8999 -0.3668 36 1 9.4426 8.7334 2.7211 37 1 4.2609 3.1591 -0.8394 38 1 3.2789 3.3340 0.6454 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192987637.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:47:21 Heat of formation + Delta-G solvation = -179.714053 kcal Electronic energy + Delta-G solvation = -25339.553834 eV Core-core repulsion = 21465.015706 eV Total energy + Delta-G solvation = -3874.538127 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.96731 -40.81870 -37.86093 -37.54334 -36.95395 -36.29521 -35.64982 -35.18155 -30.86619 -30.62082 -28.59308 -28.42861 -27.85732 -24.78316 -22.59774 -22.42182 -21.17790 -20.75208 -19.53689 -18.81235 -18.60364 -18.14901 -17.73096 -17.40977 -17.04717 -16.34831 -16.24688 -16.00093 -15.75366 -15.32120 -14.73093 -14.35575 -14.33727 -14.05407 -13.95912 -13.76993 -13.58382 -13.21245 -13.06847 -13.02910 -12.90549 -12.68224 -12.61106 -12.52926 -12.30537 -12.27048 -12.08289 -11.90264 -11.79727 -11.63962 -11.44940 -11.25009 -10.92038 -9.46175 -9.04841 -8.78212 -7.53822 0.09485 0.42886 0.53986 1.09590 1.35183 1.35367 1.52486 1.67075 2.18588 2.54211 2.75680 2.81995 3.18934 3.47843 3.59140 3.83125 3.97859 4.09669 4.14780 4.24565 4.26891 4.34271 4.35255 4.43852 4.57311 4.68676 4.73719 4.76965 4.82981 4.91369 5.02552 5.15121 5.19709 5.29330 5.32793 5.45202 5.65270 5.66759 5.83497 6.03873 6.30227 6.66965 6.71722 8.17137 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.023753 B = 0.003466 C = 0.003145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.500165 B = 8076.881631 C = 8901.142505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.352 6.352 3 C 0.475 3.525 4 O -0.539 6.539 5 C -0.074 4.074 6 H 0.153 0.847 7 C -0.054 4.054 8 C -0.076 4.076 9 C -0.124 4.124 10 C -0.087 4.087 11 C -0.202 4.202 12 C 0.175 3.825 13 N -1.060 6.060 14 S 2.706 3.294 15 O -1.029 7.029 16 O -1.038 7.038 17 C -1.029 5.029 18 H 0.130 0.870 19 C 0.072 3.928 20 N -0.892 5.892 21 Si 0.993 3.007 22 H -0.256 1.256 23 H -0.263 1.263 24 H -0.241 1.241 25 C -0.149 4.149 26 C -0.069 4.069 27 H 0.136 0.864 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.127 0.873 31 H 0.088 0.912 32 H 0.161 0.839 33 H 0.152 0.848 34 H 0.137 0.863 35 H 0.422 0.578 36 H 0.301 0.699 37 H 0.088 0.912 38 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.575 -22.268 -3.647 23.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.268 6.268 3 C 0.319 3.681 4 O -0.429 6.429 5 C -0.093 4.093 6 H 0.171 0.829 7 C -0.091 4.091 8 C -0.077 4.077 9 C -0.142 4.142 10 C -0.106 4.106 11 C -0.223 4.223 12 C 0.079 3.921 13 N -0.806 5.806 14 S 2.809 3.191 15 O -1.019 7.019 16 O -1.028 7.028 17 C -1.163 5.163 18 H 0.148 0.852 19 C -0.141 4.141 20 N -0.523 5.523 21 Si 0.811 3.189 22 H -0.180 1.180 23 H -0.187 1.187 24 H -0.164 1.164 25 C -0.153 4.153 26 C -0.106 4.106 27 H 0.154 0.846 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.145 0.855 31 H 0.107 0.893 32 H 0.179 0.821 33 H 0.170 0.830 34 H 0.154 0.846 35 H 0.257 0.743 36 H 0.111 0.889 37 H 0.106 0.894 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -8.319 -20.993 -3.125 22.797 hybrid contribution 0.692 0.962 -0.463 1.272 sum -7.627 -20.031 -3.588 21.732 Atomic orbital electron populations 1.23575 0.74875 1.05854 1.02377 1.86503 1.24798 1.32029 1.83484 1.23711 0.92030 0.81292 0.71029 1.90691 1.67808 1.37726 1.46634 1.21728 0.86387 0.97302 1.03866 0.82929 1.20948 0.93090 1.00074 0.94992 1.20615 0.96397 0.94142 0.96538 1.20872 0.92917 1.00965 0.99475 1.21171 0.99811 0.91683 0.97919 1.21878 0.98409 1.00840 1.01199 1.17306 0.94139 0.85090 0.95605 1.53511 1.74214 1.21818 1.31100 1.00497 0.76944 0.70038 0.71623 1.93343 1.84205 1.86095 1.38248 1.93326 1.88546 1.53476 1.67450 1.30780 1.17077 1.14597 1.53835 0.85246 1.26051 1.07924 0.91622 0.88517 1.69990 1.41358 1.08152 1.32810 0.85082 0.73655 0.80863 0.79331 1.18030 1.18747 1.16358 1.20361 0.95312 0.96043 1.03591 1.20874 0.93511 0.96089 1.00122 0.84627 0.92329 0.92084 0.85460 0.89333 0.82106 0.83009 0.84595 0.74267 0.88904 0.89354 0.90866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.56 113.37 1.20 1.52 16 2 O -0.35 -5.89 10.55 -51.47 -0.54 -6.43 16 3 C 0.48 10.19 7.17 71.24 0.51 10.70 16 4 O -0.54 -15.69 15.31 21.98 0.34 -15.36 16 5 C -0.07 -1.38 3.58 -10.63 -0.04 -1.42 16 6 H 0.15 1.92 8.14 -2.38 -0.02 1.90 16 7 C -0.05 -0.90 6.30 30.52 0.19 -0.71 16 8 C -0.08 -1.88 6.13 -19.60 -0.12 -2.00 16 9 C -0.12 -2.90 10.03 22.33 0.22 -2.68 16 10 C -0.09 -2.57 10.04 22.22 0.22 -2.35 16 11 C -0.20 -7.89 8.89 22.37 0.20 -7.69 16 12 C 0.18 6.88 6.21 38.25 0.24 7.12 16 13 N -1.06 -45.61 5.75 -51.29 -0.29 -45.90 16 14 S 2.71 149.95 4.62 -56.49 -0.26 149.69 16 15 O -1.03 -63.47 17.41 -128.00 -2.23 -65.70 16 16 O -1.04 -63.53 18.02 -128.00 -2.31 -65.84 16 17 C -1.03 -55.67 7.56 67.73 0.51 -55.16 16 18 H 0.13 6.26 6.92 -2.91 -0.02 6.24 16 19 C 0.07 3.95 5.46 84.65 0.46 4.41 16 20 N -0.89 -52.85 13.19 21.44 0.28 -52.57 16 21 Si 0.99 40.18 29.54 68.60 2.03 42.20 16 22 H -0.26 -9.87 7.11 99.48 0.71 -9.16 16 23 H -0.26 -10.08 7.11 99.48 0.71 -9.38 16 24 H -0.24 -8.90 7.11 99.48 0.71 -8.19 16 25 C -0.15 -4.69 6.10 -19.47 -0.12 -4.81 16 26 C -0.07 -1.85 5.87 30.51 0.18 -1.67 16 27 H 0.14 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.06 0.78 8.13 -2.39 -0.02 0.76 16 29 H 0.06 0.78 8.13 -2.39 -0.02 0.76 16 30 H 0.13 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.09 1.46 7.89 -2.39 -0.02 1.44 16 32 H 0.16 2.41 8.06 -2.91 -0.02 2.39 16 33 H 0.15 3.56 8.06 -2.91 -0.02 3.54 16 34 H 0.14 5.98 4.48 -2.91 -0.01 5.97 16 35 H 0.42 15.53 8.81 -96.74 -0.85 14.68 16 36 H 0.30 15.95 8.31 -92.70 -0.77 15.18 16 37 H 0.09 2.17 8.13 -2.38 -0.02 2.15 16 38 H 0.07 2.31 7.07 -2.38 -0.02 2.29 16 Total: -1.00 -83.09 338.02 0.94 -82.15 By element: Atomic # 1 Polarization: 32.20 SS G_CDS: 0.27 Total: 32.47 kcal Atomic # 6 Polarization: -58.38 SS G_CDS: 3.66 Total: -54.72 kcal Atomic # 7 Polarization: -98.46 SS G_CDS: -0.01 Total: -98.47 kcal Atomic # 8 Polarization: -148.58 SS G_CDS: -4.74 Total: -153.32 kcal Atomic # 14 Polarization: 40.18 SS G_CDS: 2.03 Total: 42.20 kcal Atomic # 16 Polarization: 149.95 SS G_CDS: -0.26 Total: 149.69 kcal Total: -83.09 0.94 -82.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192987637.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.559 kcal (2) G-P(sol) polarization free energy of solvation -83.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds