Wall clock time and date at job start Fri Apr 10 2020 14:49:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08995 * 109.46825 * 2 1 4 4 C 1.50698 * 109.47182 * 240.00100 * 2 1 3 5 5 H 1.08007 * 120.00155 * 275.00441 * 4 2 1 6 6 C 1.37874 * 119.99992 * 95.00236 * 4 2 1 7 7 N 1.31517 * 120.00002 * 184.91569 * 6 4 2 8 8 Si 1.86798 * 120.00061 * 4.91864 * 6 4 2 9 9 H 1.48489 * 109.47585 * 84.83036 * 8 6 4 10 10 H 1.48507 * 109.47059 * 204.83224 * 8 6 4 11 11 H 1.48501 * 109.46906 * 324.82937 * 8 6 4 12 12 N 1.46500 * 109.46750 * 119.99992 * 2 1 3 13 13 C 1.34767 * 120.00201 * 274.99736 * 12 2 1 14 14 O 1.21637 * 120.00262 * 0.02562 * 13 12 2 15 15 C 1.47279 * 120.00352 * 179.97438 * 13 12 2 16 16 C 1.37296 * 120.55139 * 180.02562 * 15 13 12 17 17 N 1.35970 * 121.62615 * 180.19287 * 16 15 13 18 18 C 1.46664 * 115.62270 * 182.64486 * 17 16 15 19 19 C 1.53111 * 110.51803 * 216.67531 * 18 17 16 20 20 S 1.82064 * 107.04429 * 302.23832 * 19 18 17 21 21 O 1.42100 * 110.78277 * 161.70887 * 20 19 18 22 22 O 1.42099 * 110.78213 * 299.24670 * 20 19 18 23 23 N 1.65331 * 102.88280 * 50.19878 * 20 19 18 24 24 C 1.31311 * 122.54537 * 336.85381 * 23 20 19 25 25 C 1.42840 * 114.94114 * 179.46942 * 24 23 20 26 26 C 1.34958 * 120.55764 * 182.97904 * 25 24 23 27 27 H 1.09003 * 109.46463 * 175.03239 * 1 2 3 28 28 H 1.08993 * 109.46849 * 295.03527 * 1 2 3 29 29 H 1.08997 * 109.46690 * 55.03522 * 1 2 3 30 30 H 0.96994 * 119.99976 * 180.02562 * 7 6 4 31 31 H 0.97006 * 119.99578 * 95.00722 * 12 2 1 32 32 H 1.07991 * 119.18808 * 359.90985 * 16 15 13 33 33 H 1.09001 * 109.26043 * 336.94084 * 18 17 16 34 34 H 1.09000 * 109.26961 * 96.43751 * 18 17 16 35 35 H 1.08997 * 109.94233 * 61.62176 * 19 18 17 36 36 H 1.09000 * 109.94350 * 182.85784 * 19 18 17 37 37 H 1.08001 * 119.72093 * 2.96413 * 25 24 23 38 38 H 1.08002 * 120.77002 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.1355 -1.7855 -1.2291 6 6 2.3604 0.0121 -2.3580 7 7 2.7061 -0.6131 -3.4622 8 14 2.3138 1.8791 -2.3173 9 1 3.5992 2.3949 -1.7820 10 1 2.1060 2.3992 -3.6927 11 1 1.1988 2.3275 -1.4449 12 7 2.0183 -0.6906 1.1962 13 6 2.1471 -0.0183 2.3571 14 8 1.8574 1.1618 2.4119 15 6 2.6374 -0.7127 3.5598 16 6 2.7723 -0.0389 4.7484 17 7 3.2265 -0.6573 5.8710 18 6 3.2618 0.1707 7.0810 19 6 4.4867 -0.1750 7.9323 20 16 4.3814 -1.9502 8.3227 21 8 5.6453 -2.4515 8.7355 22 8 3.1991 -2.2355 9.0576 23 7 4.1179 -2.6382 6.8426 24 6 3.5991 -1.9726 5.8365 25 6 3.4538 -2.7223 4.6294 26 6 2.9886 -2.1333 3.5077 27 1 -0.3632 -1.0239 -0.0890 28 1 -0.3633 0.4349 0.9311 29 1 -0.3632 0.5889 -0.8422 30 1 2.9372 -0.1048 -4.2553 31 1 2.2491 -1.6318 1.1526 32 1 2.5157 1.0091 4.7918 33 1 3.3068 1.2219 6.7962 34 1 2.3579 -0.0056 7.6641 35 1 5.3987 0.0287 7.3713 36 1 4.4768 0.4091 8.8525 37 1 3.7187 -3.7692 4.6141 38 1 2.8777 -2.6968 2.5930 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000064346282.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:49:31 Heat of formation + Delta-G solvation = -40.964838 kcal Electronic energy + Delta-G solvation = -24952.754106 eV Core-core repulsion = 21116.525347 eV Total energy + Delta-G solvation = -3836.228759 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.093 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -41.60912 -39.21322 -37.18562 -36.03441 -35.68592 -35.30925 -34.88600 -32.57494 -31.79076 -30.41049 -29.24412 -25.66014 -25.46192 -24.52613 -23.56162 -21.34880 -20.06517 -19.39456 -18.78268 -18.17580 -17.68342 -17.00858 -16.64579 -16.35855 -15.88270 -15.73647 -15.41310 -15.02216 -14.57261 -14.38117 -14.09241 -13.97554 -13.59992 -13.21852 -12.87813 -12.73908 -12.63553 -12.51525 -12.22892 -12.13225 -12.08786 -11.72815 -11.40229 -11.23283 -11.22281 -10.94411 -10.72646 -10.61845 -10.02312 -10.00545 -9.62049 -9.34497 -8.83032 -8.52677 -8.24133 -6.34728 -4.39880 -0.02155 0.29095 0.60887 1.52422 2.50212 2.61980 3.16162 3.25533 3.28025 3.30611 3.47995 3.55374 3.65346 3.89853 3.94149 4.19351 4.21512 4.29085 4.39647 4.58502 4.64055 4.75255 4.90273 4.94890 5.09083 5.34529 5.55000 5.71724 5.86925 6.05849 6.21148 6.37830 6.53578 6.73454 6.77337 7.02026 7.19397 7.36376 7.93841 8.35719 8.60705 8.69300 9.26019 10.76708 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.029987 B = 0.002729 C = 0.002658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.511123 B =10256.377248 C =10531.591044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.231 3.769 3 H 0.053 0.947 4 C -0.534 4.534 5 H 0.080 0.920 6 C 0.083 3.917 7 N -0.885 5.885 8 Si 0.874 3.126 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.260 1.260 12 N -0.691 5.691 13 C 0.558 3.442 14 O -0.559 6.559 15 C -0.202 4.202 16 C 0.169 3.831 17 N -0.506 5.506 18 C 0.097 3.903 19 C -0.681 4.681 20 S 2.552 3.448 21 O -0.943 6.943 22 O -0.964 6.964 23 N -0.969 5.969 24 C 0.517 3.483 25 C -0.158 4.158 26 C 0.001 3.999 27 H 0.048 0.952 28 H 0.030 0.970 29 H 0.054 0.946 30 H 0.269 0.731 31 H 0.394 0.606 32 H 0.187 0.813 33 H 0.127 0.873 34 H 0.112 0.888 35 H 0.141 0.859 36 H 0.152 0.848 37 H 0.169 0.831 38 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.823 1.794 18.134 18.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.129 3.871 3 H 0.070 0.930 4 C -0.572 4.572 5 H 0.098 0.902 6 C -0.123 4.123 7 N -0.521 5.521 8 Si 0.701 3.299 9 H -0.198 1.198 10 H -0.211 1.211 11 H -0.184 1.184 12 N -0.338 5.338 13 C 0.343 3.657 14 O -0.440 6.440 15 C -0.211 4.211 16 C 0.042 3.958 17 N -0.201 5.201 18 C -0.025 4.025 19 C -0.805 4.805 20 S 2.639 3.361 21 O -0.933 6.933 22 O -0.953 6.953 23 N -0.824 5.824 24 C 0.262 3.738 25 C -0.182 4.182 26 C -0.023 4.023 27 H 0.068 0.932 28 H 0.049 0.951 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.229 0.771 32 H 0.204 0.796 33 H 0.145 0.855 34 H 0.130 0.870 35 H 0.160 0.840 36 H 0.170 0.830 37 H 0.186 0.814 38 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 1.097 1.545 19.251 19.344 hybrid contribution 0.131 1.763 -0.347 1.801 sum 1.228 3.307 18.904 19.231 Atomic orbital electron populations 1.22229 0.98278 1.00806 0.99408 1.19206 0.91096 0.94380 0.82376 0.92961 1.20980 1.45682 0.95687 0.94877 0.90169 1.24943 0.93497 0.98675 0.95146 1.69871 1.44169 1.36325 1.01721 0.86899 0.79756 0.85752 0.77539 1.19826 1.21119 1.18435 1.46613 1.63758 1.13951 1.09508 1.17579 0.78760 0.86516 0.82849 1.90771 1.52611 1.15426 1.85177 1.20936 1.10629 0.94679 0.94874 1.22409 0.90570 0.99042 0.83828 1.45151 1.53764 1.09838 1.11380 1.21996 0.98423 0.97895 0.84195 1.31081 1.05545 1.33606 1.10284 1.07128 0.75581 0.75384 0.77966 1.93600 1.42599 1.75340 1.81715 1.93607 1.47936 1.81164 1.72574 1.75194 1.45369 1.43268 1.18614 1.19171 0.81658 0.78749 0.94216 1.21413 1.06184 1.01974 0.88619 1.22708 0.88371 0.92378 0.98880 0.93238 0.95133 0.92734 0.92085 0.77146 0.79601 0.85487 0.86969 0.84044 0.82959 0.81352 0.82448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.90 9.47 37.16 0.35 -2.55 16 2 C 0.23 4.89 2.22 -69.08 -0.15 4.74 16 3 H 0.05 1.21 4.73 -51.93 -0.25 0.97 16 4 C -0.53 -13.11 9.05 -34.44 -0.31 -13.43 16 5 H 0.08 2.07 8.06 -52.48 -0.42 1.65 16 6 C 0.08 2.15 5.47 -17.82 -0.10 2.06 16 7 N -0.89 -24.62 13.96 55.43 0.77 -23.85 16 8 Si 0.87 20.05 26.99 -169.99 -4.59 15.46 16 9 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 10 H -0.29 -6.50 7.11 56.52 0.40 -6.09 16 11 H -0.26 -5.82 6.82 56.52 0.39 -5.43 16 12 N -0.69 -11.62 5.03 -56.05 -0.28 -11.91 16 13 C 0.56 8.65 7.73 -12.59 -0.10 8.55 16 14 O -0.56 -10.43 15.97 5.24 0.08 -10.34 16 15 C -0.20 -2.19 6.00 -103.27 -0.62 -2.81 16 16 C 0.17 1.46 9.67 -16.06 -0.16 1.30 16 17 N -0.51 -4.11 2.99 -115.37 -0.34 -4.45 16 18 C 0.10 0.52 6.20 -3.90 -0.02 0.50 16 19 C -0.68 -4.16 6.81 37.21 0.25 -3.90 16 20 S 2.55 29.70 6.05 -107.50 -0.65 29.05 16 21 O -0.94 -14.42 18.12 -57.50 -1.04 -15.47 16 22 O -0.96 -13.97 18.11 -57.50 -1.04 -15.01 16 23 N -0.97 -11.95 10.53 31.29 0.33 -11.62 16 24 C 0.52 5.33 7.29 -156.65 -1.14 4.19 16 25 C -0.16 -1.44 9.77 -38.97 -0.38 -1.82 16 26 C 0.00 0.01 9.73 -37.45 -0.36 -0.35 16 27 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 28 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 31 H 0.39 5.56 6.73 -40.82 -0.27 5.28 16 32 H 0.19 1.28 7.21 -52.49 -0.38 0.90 16 33 H 0.13 0.30 7.61 -51.93 -0.40 -0.10 16 34 H 0.11 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.14 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.15 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.17 1.31 8.06 -52.49 -0.42 0.88 16 38 H 0.16 1.09 6.64 -52.49 -0.35 0.74 16 LS Contribution 334.37 15.07 5.04 5.04 Total: -1.00 -36.52 334.37 -8.64 -45.16 By element: Atomic # 1 Polarization: 5.64 SS G_CDS: -4.18 Total: 1.47 kcal Atomic # 6 Polarization: -0.78 SS G_CDS: -2.74 Total: -3.53 kcal Atomic # 7 Polarization: -52.30 SS G_CDS: 0.48 Total: -51.83 kcal Atomic # 8 Polarization: -38.82 SS G_CDS: -2.00 Total: -40.82 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -4.59 Total: 15.46 kcal Atomic # 16 Polarization: 29.70 SS G_CDS: -0.65 Total: 29.05 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -36.52 -8.64 -45.16 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064346282.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.192 kcal (2) G-P(sol) polarization free energy of solvation -36.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds