Wall clock time and date at job start Fri Apr 10 2020 14:50:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46507 * 109.47013 * 2 1 4 4 C 1.46499 * 119.99637 * 275.00199 * 3 2 1 5 5 C 1.50702 * 109.47244 * 274.99385 * 4 3 2 6 6 H 1.08004 * 119.99730 * 0.02562 * 5 4 3 7 7 C 1.37876 * 120.00095 * 180.02562 * 5 4 3 8 8 N 1.31515 * 119.99785 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99933 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47197 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.47172 * 119.99951 * 9 7 5 12 12 H 1.48497 * 109.46989 * 240.00244 * 9 7 5 13 13 S 1.65600 * 119.99891 * 94.99880 * 3 2 1 14 14 O 1.42099 * 106.40090 * 336.46259 * 13 3 2 15 15 O 1.42098 * 106.40118 * 203.53978 * 13 3 2 16 16 C 1.76197 * 107.21488 * 90.00117 * 13 3 2 17 17 C 1.38446 * 119.85671 * 90.00138 * 16 13 3 18 18 C 1.38105 * 120.28155 * 180.02562 * 17 16 13 19 19 C 1.38662 * 119.85265 * 359.97438 * 18 17 16 20 20 N 1.39291 * 133.33776 * 180.02562 * 19 18 17 21 21 H 0.97000 * 125.82094 * 0.03387 * 20 19 18 22 22 C 1.34641 * 108.36120 * 180.02562 * 20 19 18 23 23 O 1.21689 * 125.15741 * 180.02562 * 22 20 19 24 24 N 1.34637 * 109.67721 * 359.97438 * 22 20 19 25 25 H 0.97001 * 125.81581 * 179.97438 * 24 22 20 26 26 C 1.39288 * 108.36292 * 0.26817 * 24 22 20 27 27 C 1.38104 * 119.86230 * 269.97766 * 16 13 3 28 28 H 1.09006 * 109.47100 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47667 * 299.99872 * 1 2 3 30 30 H 1.08997 * 109.47381 * 60.00171 * 1 2 3 31 31 H 1.09004 * 109.47063 * 240.00349 * 2 1 3 32 32 H 1.08997 * 109.47381 * 119.99829 * 2 1 3 33 33 H 1.08999 * 109.47811 * 35.00128 * 4 3 2 34 34 H 1.09010 * 109.46805 * 154.99795 * 4 3 2 35 35 H 0.97001 * 119.99584 * 179.97438 * 8 7 5 36 36 H 1.07998 * 119.86151 * 359.97438 * 17 16 13 37 37 H 1.08004 * 120.07354 * 180.02562 * 18 17 16 38 38 H 1.07998 * 120.07438 * 359.97438 * 27 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1581 2.1087 -1.2639 5 6 3.4947 1.7890 -1.8824 6 1 4.1720 1.1113 -1.3839 7 6 3.8528 2.3615 -3.0844 8 7 3.0281 3.1871 -3.6911 9 14 5.5092 1.9646 -3.8513 10 1 6.2447 1.0158 -2.9772 11 1 5.3016 1.3479 -5.1861 12 1 6.2977 3.2140 -4.0004 13 16 2.4121 2.1203 1.4287 14 8 1.6868 1.4415 2.4448 15 8 2.3056 3.5186 1.1998 16 6 4.1168 1.7941 1.7319 17 6 5.0810 2.6644 1.2525 18 6 6.4197 2.4170 1.4846 19 6 6.7997 1.2925 2.2014 20 7 8.0346 0.7797 2.5916 21 1 8.8995 1.1749 2.4001 22 6 7.8230 -0.3577 3.2803 23 8 8.6942 -1.0564 3.7639 24 7 6.5015 -0.6042 3.3536 25 1 6.0892 -1.3626 3.7961 26 6 5.8276 0.4117 2.6799 27 6 4.4856 0.6718 2.4472 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5138 0.8900 33 1 1.3616 1.8098 -1.9453 34 1 2.0920 3.1804 -1.0756 35 1 3.2802 3.5901 -4.5366 36 1 4.7850 3.5400 0.6939 37 1 7.1690 3.0984 1.1094 38 1 3.7307 -0.0044 2.8203 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264068999.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:50:52 Heat of formation + Delta-G solvation = -51.161537 kcal Electronic energy + Delta-G solvation = -26004.729114 eV Core-core repulsion = 22168.058193 eV Total energy + Delta-G solvation = -3836.670921 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.093 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.61381 -38.47093 -36.78224 -36.14470 -36.03723 -35.30735 -34.35182 -32.77170 -30.42701 -30.01397 -29.13817 -26.68524 -23.43874 -23.26466 -22.97703 -22.47773 -21.73502 -19.05335 -18.37651 -17.63638 -16.93203 -16.81094 -16.60167 -16.42407 -16.33357 -15.57770 -15.03487 -14.79301 -14.36018 -14.13875 -13.87147 -13.44895 -13.23687 -13.14099 -12.88241 -12.14378 -12.04436 -11.75673 -11.69704 -11.58198 -11.50412 -11.40013 -11.13400 -11.10710 -10.98772 -10.97980 -10.63661 -10.55544 -10.42250 -10.05542 -9.82031 -8.74942 -8.55790 -8.22926 -8.08012 -6.17135 -4.23614 0.70252 1.03910 1.19595 2.25872 2.68281 3.14401 3.18681 3.27682 3.28763 3.31719 3.68851 4.25934 4.30786 4.31366 4.72165 4.95518 5.04733 5.15521 5.17389 5.35076 5.38151 5.48351 5.72322 5.77491 5.80527 6.02890 6.05700 6.17592 6.27346 6.35491 6.50011 6.60380 6.64490 6.69104 6.99436 7.27933 7.36289 7.56084 7.80038 7.99133 8.08485 8.82099 9.43068 10.90792 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.010687 B = 0.005729 C = 0.004342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2619.461347 B = 4885.962285 C = 6446.640891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.128 3.872 3 N -0.979 5.979 4 C 0.242 3.758 5 C -0.541 4.541 6 H 0.063 0.937 7 C 0.067 3.933 8 N -0.888 5.888 9 Si 0.888 3.112 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.282 1.282 13 S 2.692 3.308 14 O -0.975 6.975 15 O -0.953 6.953 16 C -0.655 4.655 17 C 0.014 3.986 18 C -0.127 4.127 19 C 0.135 3.865 20 N -0.642 5.642 21 H 0.436 0.564 22 C 0.686 3.314 23 O -0.560 6.560 24 N -0.640 5.640 25 H 0.436 0.564 26 C 0.058 3.942 27 C -0.004 4.004 28 H 0.059 0.941 29 H 0.056 0.944 30 H 0.061 0.939 31 H 0.082 0.918 32 H 0.064 0.936 33 H 0.043 0.957 34 H 0.055 0.945 35 H 0.264 0.736 36 H 0.158 0.842 37 H 0.140 0.860 38 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.843 -4.170 9.858 11.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.001 3.999 3 N -0.819 5.819 4 C 0.120 3.880 5 C -0.580 4.580 6 H 0.081 0.919 7 C -0.136 4.136 8 N -0.526 5.526 9 Si 0.716 3.284 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.208 1.208 13 S 2.780 3.220 14 O -0.966 6.966 15 O -0.944 6.944 16 C -0.741 4.741 17 C -0.007 4.007 18 C -0.149 4.149 19 C 0.031 3.969 20 N -0.288 5.288 21 H 0.278 0.722 22 C 0.386 3.614 23 O -0.436 6.436 24 N -0.286 5.286 25 H 0.278 0.722 26 C -0.044 4.044 27 C -0.026 4.026 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.100 0.900 32 H 0.082 0.918 33 H 0.061 0.939 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.175 0.825 37 H 0.158 0.842 38 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 2.918 -4.080 10.559 11.690 hybrid contribution 2.013 -0.726 -0.777 2.276 sum 4.930 -4.807 9.782 11.963 Atomic orbital electron populations 1.22212 0.96651 1.01533 1.02580 1.21048 0.93836 0.82598 1.02370 1.57420 1.77709 1.23232 1.23498 1.19293 0.97496 0.92442 0.78722 1.21591 1.02220 1.28039 1.06152 0.91866 1.24910 0.97044 0.94820 0.96850 1.69934 1.35819 1.29729 1.17088 0.86598 0.84140 0.78292 0.79371 1.19735 1.20947 1.20810 1.01968 0.73424 0.73784 0.72798 1.93516 1.69730 1.75939 1.57391 1.93562 1.85813 1.29711 1.85276 1.31157 1.27428 1.03930 1.11632 1.20767 0.90629 0.97293 0.92009 1.20222 0.97171 0.96158 1.01359 1.18247 0.83757 0.95995 0.98896 1.43043 1.08435 1.24266 1.53010 0.72175 1.15920 0.82873 0.81788 0.80815 1.91102 1.45787 1.52547 1.54195 1.42844 1.06006 1.25996 1.53802 0.72201 1.17940 0.93602 0.91007 1.01809 1.19731 0.92338 0.95504 0.95056 0.92253 0.92452 0.91954 0.89968 0.91762 0.93905 0.92755 0.92592 0.82493 0.84212 0.83704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.42 10.24 37.16 0.38 -2.04 16 2 C 0.13 1.99 6.06 -4.04 -0.02 1.97 16 3 N -0.98 -18.23 2.77 -115.66 -0.32 -18.55 16 4 C 0.24 5.49 5.43 -5.19 -0.03 5.46 16 5 C -0.54 -13.11 9.38 -34.44 -0.32 -13.44 16 6 H 0.06 1.50 7.81 -52.48 -0.41 1.09 16 7 C 0.07 1.71 5.46 -17.82 -0.10 1.61 16 8 N -0.89 -24.00 13.29 55.43 0.74 -23.26 16 9 Si 0.89 19.75 29.54 -169.99 -5.02 14.73 16 10 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 11 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 12 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 13 S 2.69 48.15 5.64 -107.50 -0.61 47.54 16 14 O -0.98 -17.50 16.24 -57.17 -0.93 -18.42 16 15 O -0.95 -19.75 15.82 -57.17 -0.90 -20.65 16 16 C -0.66 -10.32 5.97 -39.55 -0.24 -10.56 16 17 C 0.01 0.21 9.51 -39.55 -0.38 -0.16 16 18 C -0.13 -1.65 10.07 -39.47 -0.40 -2.05 16 19 C 0.13 1.74 7.26 -83.79 -0.61 1.13 16 20 N -0.64 -7.40 6.15 -14.30 -0.09 -7.48 16 21 H 0.44 3.77 8.96 -40.82 -0.37 3.40 16 22 C 0.69 9.22 9.21 -87.17 -0.80 8.42 16 23 O -0.56 -9.12 18.05 5.20 0.09 -9.03 16 24 N -0.64 -7.43 6.15 -14.30 -0.09 -7.52 16 25 H 0.44 3.82 8.96 -40.82 -0.37 3.45 16 26 C 0.06 0.76 7.26 -83.80 -0.61 0.16 16 27 C 0.00 -0.06 9.54 -39.48 -0.38 -0.43 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 31 H 0.08 1.29 8.11 -51.93 -0.42 0.87 16 32 H 0.06 0.86 7.61 -51.93 -0.40 0.46 16 33 H 0.04 1.02 8.11 -51.93 -0.42 0.60 16 34 H 0.05 1.34 6.92 -51.92 -0.36 0.99 16 35 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 36 H 0.16 2.46 7.60 -52.49 -0.40 2.06 16 37 H 0.14 1.42 8.06 -52.48 -0.42 0.99 16 38 H 0.15 1.67 7.61 -52.49 -0.40 1.27 16 LS Contribution 342.83 15.07 5.17 5.17 Total: -1.00 -32.16 342.83 -9.82 -41.98 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: -4.36 Total: 5.44 kcal Atomic # 6 Polarization: -6.44 SS G_CDS: -3.50 Total: -9.93 kcal Atomic # 7 Polarization: -57.06 SS G_CDS: 0.24 Total: -56.82 kcal Atomic # 8 Polarization: -46.36 SS G_CDS: -1.74 Total: -48.10 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -5.02 Total: 14.73 kcal Atomic # 16 Polarization: 48.15 SS G_CDS: -0.61 Total: 47.54 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.16 -9.82 -41.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264068999.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.181 kcal (2) G-P(sol) polarization free energy of solvation -32.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds