Wall clock time and date at job start Fri Apr 10 2020 14:50:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46507 * 109.47013 * 2 1 4 4 C 1.46499 * 119.99637 * 275.00199 * 3 2 1 5 5 C 1.50702 * 109.47244 * 274.99385 * 4 3 2 6 6 H 1.08004 * 119.99730 * 0.02562 * 5 4 3 7 7 C 1.37876 * 120.00095 * 180.02562 * 5 4 3 8 8 N 1.31515 * 119.99785 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99933 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47197 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.47172 * 119.99951 * 9 7 5 12 12 H 1.48497 * 109.46989 * 240.00244 * 9 7 5 13 13 S 1.65600 * 119.99891 * 94.99880 * 3 2 1 14 14 O 1.42099 * 106.40090 * 336.46259 * 13 3 2 15 15 O 1.42098 * 106.40118 * 203.53978 * 13 3 2 16 16 C 1.76197 * 107.21488 * 90.00117 * 13 3 2 17 17 C 1.38446 * 119.85671 * 90.00138 * 16 13 3 18 18 C 1.38105 * 120.28155 * 180.02562 * 17 16 13 19 19 C 1.38662 * 119.85265 * 359.97438 * 18 17 16 20 20 N 1.39291 * 133.33776 * 180.02562 * 19 18 17 21 21 H 0.97000 * 125.82094 * 0.03387 * 20 19 18 22 22 C 1.34641 * 108.36120 * 180.02562 * 20 19 18 23 23 O 1.21689 * 125.15741 * 180.02562 * 22 20 19 24 24 N 1.34637 * 109.67721 * 359.97438 * 22 20 19 25 25 H 0.97001 * 125.81581 * 179.97438 * 24 22 20 26 26 C 1.39288 * 108.36292 * 0.26817 * 24 22 20 27 27 C 1.38104 * 119.86230 * 269.97766 * 16 13 3 28 28 H 1.09006 * 109.47100 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47667 * 299.99872 * 1 2 3 30 30 H 1.08997 * 109.47381 * 60.00171 * 1 2 3 31 31 H 1.09004 * 109.47063 * 240.00349 * 2 1 3 32 32 H 1.08997 * 109.47381 * 119.99829 * 2 1 3 33 33 H 1.08999 * 109.47811 * 35.00128 * 4 3 2 34 34 H 1.09010 * 109.46805 * 154.99795 * 4 3 2 35 35 H 0.97001 * 119.99584 * 179.97438 * 8 7 5 36 36 H 1.07998 * 119.86151 * 359.97438 * 17 16 13 37 37 H 1.08004 * 120.07354 * 180.02562 * 18 17 16 38 38 H 1.07998 * 120.07438 * 359.97438 * 27 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1581 2.1087 -1.2639 5 6 3.4947 1.7890 -1.8824 6 1 4.1720 1.1113 -1.3839 7 6 3.8528 2.3615 -3.0844 8 7 3.0281 3.1871 -3.6911 9 14 5.5092 1.9646 -3.8513 10 1 6.2447 1.0158 -2.9772 11 1 5.3016 1.3479 -5.1861 12 1 6.2977 3.2140 -4.0004 13 16 2.4121 2.1203 1.4287 14 8 1.6868 1.4415 2.4448 15 8 2.3056 3.5186 1.1998 16 6 4.1168 1.7941 1.7319 17 6 5.0810 2.6644 1.2525 18 6 6.4197 2.4170 1.4846 19 6 6.7997 1.2925 2.2014 20 7 8.0346 0.7797 2.5916 21 1 8.8995 1.1749 2.4001 22 6 7.8230 -0.3577 3.2803 23 8 8.6942 -1.0564 3.7639 24 7 6.5015 -0.6042 3.3536 25 1 6.0892 -1.3626 3.7961 26 6 5.8276 0.4117 2.6799 27 6 4.4856 0.6718 2.4472 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5138 0.8900 33 1 1.3616 1.8098 -1.9453 34 1 2.0920 3.1804 -1.0756 35 1 3.2802 3.5901 -4.5366 36 1 4.7850 3.5400 0.6939 37 1 7.1690 3.0984 1.1094 38 1 3.7307 -0.0044 2.8203 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264068999.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:50:51 Heat of formation + Delta-G solvation = -75.024863 kcal Electronic energy + Delta-G solvation = -26005.763905 eV Core-core repulsion = 22168.058193 eV Total energy + Delta-G solvation = -3837.705712 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.093 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.64330 -39.57799 -38.25702 -37.61934 -37.18827 -36.79760 -35.34813 -34.62221 -31.49886 -31.45719 -30.23866 -28.42270 -24.88452 -24.47641 -24.12591 -23.53881 -23.16275 -20.28849 -19.46403 -18.93906 -18.56610 -18.16397 -17.90543 -17.59443 -17.45714 -17.06005 -16.35767 -16.19238 -15.73259 -15.26123 -15.12185 -14.74496 -14.64822 -14.32897 -14.25836 -13.72777 -13.53869 -13.27816 -13.10609 -12.96819 -12.74193 -12.69842 -12.60995 -12.55882 -12.31671 -12.14994 -12.12583 -12.05775 -11.87937 -11.59527 -11.48214 -10.51990 -9.82133 -9.68330 -9.25118 -8.10665 -6.22717 -0.53552 -0.24888 0.10488 1.31545 1.43937 1.47810 1.56936 1.64005 2.02322 2.13404 2.40616 2.49534 2.88954 3.22124 3.27829 3.44663 3.89603 3.97145 4.06211 4.11137 4.24714 4.49943 4.52504 4.57557 4.76523 4.80113 4.94776 5.05492 5.08991 5.24982 5.36639 5.37732 5.45184 5.50601 5.61651 5.77059 5.83851 6.00600 6.01779 6.18083 6.90260 7.01186 7.47260 8.97523 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.010687 B = 0.005729 C = 0.004342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2619.461347 B = 4885.962285 C = 6446.640891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.117 3.883 3 N -0.985 5.985 4 C 0.257 3.743 5 C -0.535 4.535 6 H 0.071 0.929 7 C 0.017 3.983 8 N -0.926 5.926 9 Si 0.948 3.052 10 H -0.262 1.262 11 H -0.286 1.286 12 H -0.280 1.280 13 S 2.701 3.299 14 O -0.977 6.977 15 O -0.990 6.990 16 C -0.665 4.665 17 C -0.007 4.007 18 C -0.118 4.118 19 C 0.136 3.864 20 N -0.627 5.627 21 H 0.450 0.550 22 C 0.683 3.317 23 O -0.589 6.589 24 N -0.625 5.625 25 H 0.449 0.551 26 C 0.058 3.942 27 C 0.000 4.000 28 H 0.090 0.910 29 H 0.051 0.949 30 H 0.047 0.953 31 H 0.081 0.919 32 H 0.092 0.908 33 H 0.025 0.975 34 H 0.026 0.974 35 H 0.264 0.736 36 H 0.145 0.855 37 H 0.169 0.831 38 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.448 -5.764 10.732 12.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.008 4.008 3 N -0.824 5.824 4 C 0.134 3.866 5 C -0.574 4.574 6 H 0.089 0.911 7 C -0.183 4.183 8 N -0.567 5.567 9 Si 0.774 3.226 10 H -0.186 1.186 11 H -0.213 1.213 12 H -0.206 1.206 13 S 2.793 3.207 14 O -0.968 6.968 15 O -0.981 6.981 16 C -0.755 4.755 17 C -0.029 4.029 18 C -0.140 4.140 19 C 0.032 3.968 20 N -0.273 5.273 21 H 0.294 0.706 22 C 0.382 3.618 23 O -0.467 6.467 24 N -0.273 5.273 25 H 0.293 0.707 26 C -0.045 4.045 27 C -0.022 4.022 28 H 0.109 0.891 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.099 0.901 32 H 0.110 0.890 33 H 0.043 0.957 34 H 0.044 0.956 35 H 0.073 0.927 36 H 0.163 0.837 37 H 0.187 0.813 38 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 4.480 -5.690 11.447 13.545 hybrid contribution 1.527 -0.265 -0.956 1.821 sum 6.008 -5.955 10.491 13.476 Atomic orbital electron populations 1.22209 0.95776 1.03285 1.01572 1.21349 0.94735 0.81079 1.03671 1.57319 1.78618 1.24300 1.22124 1.18820 0.96497 0.91295 0.80036 1.21853 1.02574 1.27180 1.05802 0.91120 1.25663 1.00138 0.94865 0.97599 1.70056 1.37737 1.31234 1.17626 0.85656 0.80438 0.78168 0.78346 1.18574 1.21250 1.20586 1.01384 0.74155 0.72811 0.72333 1.93502 1.70603 1.75671 1.56985 1.93515 1.86821 1.32066 1.85672 1.30684 1.25575 1.05543 1.13664 1.20794 0.91818 0.97295 0.92966 1.20399 0.96697 0.96434 1.00470 1.18329 0.84231 0.95842 0.98446 1.42980 1.08771 1.23538 1.52006 0.70572 1.15997 0.82988 0.81939 0.80846 1.91092 1.46642 1.53539 1.55471 1.42782 1.05371 1.25998 1.53113 0.70653 1.17952 0.93495 0.91342 1.01711 1.19870 0.93236 0.94908 0.94177 0.89130 0.93005 0.93412 0.90089 0.88959 0.95683 0.95580 0.92679 0.83745 0.81315 0.81555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.64 10.24 71.98 0.74 -3.91 16 2 C 0.12 3.49 6.06 86.38 0.52 4.02 16 3 N -0.99 -36.69 2.77 -519.83 -1.44 -38.13 16 4 C 0.26 11.97 5.43 85.63 0.47 12.43 16 5 C -0.53 -25.95 9.38 25.60 0.24 -25.71 16 6 H 0.07 3.26 7.81 -2.91 -0.02 3.24 16 7 C 0.02 0.86 5.46 84.65 0.46 1.32 16 8 N -0.93 -51.09 13.29 21.45 0.28 -50.80 16 9 Si 0.95 40.03 29.54 68.60 2.03 42.05 16 10 H -0.26 -10.48 7.11 99.48 0.71 -9.78 16 11 H -0.29 -12.16 7.11 99.48 0.71 -11.45 16 12 H -0.28 -11.65 7.11 99.48 0.71 -10.95 16 13 S 2.70 96.31 5.64 -56.49 -0.32 95.99 16 14 O -0.98 -34.00 16.24 -128.00 -2.08 -36.08 16 15 O -0.99 -42.36 15.82 -128.00 -2.02 -44.38 16 16 C -0.66 -20.11 5.97 22.29 0.13 -19.97 16 17 C -0.01 -0.22 9.51 22.29 0.21 -0.01 16 18 C -0.12 -2.77 10.07 22.34 0.22 -2.54 16 19 C 0.14 3.10 7.26 38.39 0.28 3.38 16 20 N -0.63 -12.50 6.15 -317.44 -1.95 -14.45 16 21 H 0.45 6.35 8.96 -92.71 -0.83 5.52 16 22 C 0.68 16.47 9.21 179.14 1.65 18.12 16 23 O -0.59 -17.92 18.05 -4.31 -0.08 -18.00 16 24 N -0.63 -12.64 6.15 -317.45 -1.95 -14.59 16 25 H 0.45 6.49 8.96 -92.71 -0.83 5.66 16 26 C 0.06 1.34 7.26 38.39 0.28 1.62 16 27 C 0.00 0.01 9.54 22.34 0.21 0.22 16 28 H 0.09 1.89 8.14 -2.38 -0.02 1.87 16 29 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.08 2.44 8.11 -2.38 -0.02 2.42 16 32 H 0.09 2.23 7.61 -2.39 -0.02 2.21 16 33 H 0.03 1.24 8.11 -2.39 -0.02 1.22 16 34 H 0.03 1.36 6.92 -2.38 -0.02 1.34 16 35 H 0.26 13.84 8.31 -92.71 -0.77 13.07 16 36 H 0.14 4.60 7.60 -2.91 -0.02 4.57 16 37 H 0.17 2.87 8.06 -2.91 -0.02 2.84 16 38 H 0.17 3.29 7.61 -2.91 -0.02 3.27 16 Total: -1.00 -68.85 342.83 -2.65 -71.49 By element: Atomic # 1 Polarization: 18.45 SS G_CDS: -0.53 Total: 17.92 kcal Atomic # 6 Polarization: -16.44 SS G_CDS: 5.42 Total: -11.02 kcal Atomic # 7 Polarization: -112.91 SS G_CDS: -5.06 Total: -117.97 kcal Atomic # 8 Polarization: -94.28 SS G_CDS: -4.18 Total: -98.46 kcal Atomic # 14 Polarization: 40.03 SS G_CDS: 2.03 Total: 42.05 kcal Atomic # 16 Polarization: 96.31 SS G_CDS: -0.32 Total: 95.99 kcal Total: -68.85 -2.65 -71.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264068999.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.530 kcal (2) G-P(sol) polarization free energy of solvation -68.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds