Wall clock time and date at job start Fri Apr 10 2020 14:49:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.46308 * 2 1 4 4 C 1.50694 * 109.46822 * 240.00439 * 2 1 3 5 5 H 1.08004 * 119.99309 * 239.99382 * 4 2 1 6 6 C 1.37871 * 120.00691 * 59.99732 * 4 2 1 7 7 N 1.31515 * 120.00119 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00330 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47113 * 59.99954 * 8 6 4 10 10 H 1.48497 * 109.47162 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.46992 * 300.00012 * 8 6 4 12 12 N 1.46493 * 109.47106 * 119.99911 * 2 1 3 13 13 C 1.34777 * 120.00238 * 274.99881 * 12 2 1 14 14 O 1.21285 * 119.99954 * 0.02562 * 13 12 2 15 15 C 1.50701 * 120.00547 * 180.02562 * 13 12 2 16 16 H 1.09000 * 109.72391 * 46.32711 * 15 13 12 17 17 N 1.46078 * 109.60315 * 166.72733 * 15 13 12 18 18 C 1.39256 * 123.22520 * 69.34600 * 17 15 13 19 19 C 1.39408 * 118.81046 * 200.94217 * 18 17 15 20 20 C 1.37903 * 120.21452 * 182.12299 * 19 18 17 21 21 C 1.38306 * 120.27711 * 0.15610 * 20 19 18 22 22 C 1.38321 * 119.85636 * 359.61288 * 21 20 19 23 23 C 1.37921 * 120.01855 * 0.28464 * 22 21 20 24 24 S 1.76758 * 119.87551 * 180.70863 * 23 22 21 25 25 O 1.42105 * 106.77875 * 303.46894 * 24 23 22 26 26 O 1.42101 * 106.77863 * 77.39121 * 24 23 22 27 27 N 1.47692 * 109.59834 * 285.93763 * 15 13 12 28 28 H 1.09001 * 109.46954 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47100 * 299.99775 * 1 2 3 30 30 H 1.08998 * 109.47673 * 60.00400 * 1 2 3 31 31 H 0.96997 * 120.01000 * 180.02562 * 7 6 4 32 32 H 0.97002 * 120.00457 * 95.00380 * 12 2 1 33 33 H 0.97001 * 118.34488 * 249.62679 * 17 15 13 34 34 H 1.08001 * 119.89442 * 2.39592 * 19 18 17 35 35 H 1.07998 * 119.86212 * 180.17621 * 20 19 18 36 36 H 1.08005 * 120.07226 * 179.63258 * 21 20 19 37 37 H 1.07994 * 119.98670 * 180.26552 * 22 21 20 38 38 H 0.96998 * 122.05452 * 118.48412 * 27 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5884 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9427 0.8297 -2.6035 8 14 2.3224 -1.1194 -4.0079 9 1 1.8280 -2.5197 -4.0082 10 1 1.8268 -0.4199 -5.2204 11 1 3.8074 -1.1188 -4.0077 12 7 2.0183 -0.6906 1.1961 13 6 2.1471 -0.0182 2.3571 14 8 1.8582 1.1585 2.4117 15 6 2.6500 -0.7284 3.5875 16 1 3.5280 -1.3232 3.3358 17 7 2.9998 0.2531 4.6113 18 6 2.0552 1.0253 5.2825 19 6 2.4668 2.2081 5.8948 20 6 1.5648 2.9727 6.6043 21 6 0.2462 2.5705 6.7166 22 6 -0.1711 1.4006 6.1080 23 6 0.7280 0.6346 5.3959 24 16 0.1865 -0.8500 4.6039 25 8 -0.3934 -1.6652 5.6131 26 8 -0.4977 -0.4582 3.4217 27 7 1.5904 -1.6095 4.1188 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 0.7079 1.1609 -3.4844 32 1 2.2491 -1.6317 1.1526 33 1 3.9367 0.3753 4.8311 34 1 3.4945 2.5291 5.8095 35 1 1.8892 3.8895 7.0739 36 1 -0.4561 3.1688 7.2781 37 1 -1.2011 1.0868 6.1907 38 1 1.7036 -2.5708 4.1815 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267319385.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:49:43 Heat of formation + Delta-G solvation = -55.754264 kcal Electronic energy + Delta-G solvation = -26412.146271 eV Core-core repulsion = 22575.276194 eV Total energy + Delta-G solvation = -3836.870076 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.093 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.14565 -38.83607 -36.96156 -36.42865 -35.66687 -34.74501 -33.29997 -32.27057 -31.26725 -29.66542 -28.87934 -25.75641 -25.16072 -23.34896 -22.52187 -21.06345 -19.91828 -19.17507 -18.38208 -18.07648 -17.53876 -16.76942 -16.46372 -15.79802 -15.66131 -15.29429 -15.01419 -14.50830 -14.47464 -14.11752 -13.74606 -13.60252 -13.24121 -12.93544 -12.46955 -12.33210 -11.98223 -11.90594 -11.76046 -11.60773 -11.47422 -11.09067 -10.95043 -10.85229 -10.80043 -10.60019 -10.31839 -10.22693 -10.13248 -9.35913 -9.12270 -8.97809 -8.53249 -7.93094 -7.84052 -6.09173 -4.19461 0.46178 0.95452 1.40958 2.48494 2.87698 3.25833 3.30767 3.31402 3.32235 3.56702 3.60548 3.86347 4.35423 4.59068 4.66834 4.79869 4.89544 5.11601 5.20246 5.21679 5.23117 5.35390 5.47230 5.72958 5.84537 6.11663 6.37791 6.53965 6.62077 6.95926 7.01346 7.18518 7.25689 7.28467 7.50644 7.59565 7.70681 7.99554 8.21873 8.57836 8.74516 9.00569 9.47068 10.96314 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.021153 B = 0.003954 C = 0.003802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.398960 B = 7079.624130 C = 7363.647509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.267 3.733 3 H 0.048 0.952 4 C -0.536 4.536 5 H 0.060 0.940 6 C 0.067 3.933 7 N -0.881 5.881 8 Si 0.902 3.098 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.277 1.277 12 N -0.687 5.687 13 C 0.468 3.532 14 O -0.521 6.521 15 C 0.355 3.645 16 H 0.139 0.861 17 N -0.736 5.736 18 C 0.313 3.687 19 C -0.193 4.193 20 C -0.033 4.033 21 C -0.184 4.184 22 C 0.013 3.987 23 C -0.708 4.708 24 S 2.680 3.320 25 O -0.963 6.963 26 O -0.923 6.923 27 N -1.110 6.110 28 H 0.025 0.975 29 H 0.029 0.971 30 H 0.085 0.915 31 H 0.265 0.735 32 H 0.389 0.611 33 H 0.414 0.586 34 H 0.129 0.871 35 H 0.128 0.872 36 H 0.129 0.871 37 H 0.129 0.871 38 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.856 -2.114 18.339 19.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.166 3.834 3 H 0.066 0.934 4 C -0.575 4.575 5 H 0.078 0.922 6 C -0.136 4.136 7 N -0.518 5.518 8 Si 0.729 3.271 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.203 1.203 12 N -0.335 5.335 13 C 0.246 3.754 14 O -0.396 6.396 15 C 0.157 3.843 16 H 0.156 0.844 17 N -0.368 5.368 18 C 0.208 3.792 19 C -0.216 4.216 20 C -0.052 4.052 21 C -0.204 4.204 22 C -0.007 4.007 23 C -0.801 4.801 24 S 2.770 3.230 25 O -0.953 6.953 26 O -0.912 6.912 27 N -0.876 5.876 28 H 0.044 0.956 29 H 0.048 0.952 30 H 0.104 0.896 31 H 0.075 0.925 32 H 0.221 0.779 33 H 0.250 0.750 34 H 0.147 0.853 35 H 0.146 0.854 36 H 0.147 0.853 37 H 0.146 0.854 38 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges 3.554 -1.393 17.895 18.298 hybrid contribution 1.410 -0.760 -0.616 1.716 sum 4.965 -2.154 17.280 18.107 Atomic orbital electron populations 1.22031 0.97643 0.99424 1.01359 1.18813 0.91652 0.93672 0.79272 0.93394 1.21168 1.32679 1.13282 0.90370 0.92173 1.24878 0.94805 0.94959 0.98999 1.69908 1.35557 1.22387 1.23958 0.86513 0.79019 0.79623 0.81911 1.20175 1.21153 1.20258 1.46435 1.63527 1.13276 1.10216 1.20735 0.80991 0.88358 0.85271 1.90750 1.49139 1.15357 1.84369 1.20792 0.93173 0.84924 0.85437 0.84393 1.44589 1.08820 1.41591 1.41849 1.16869 0.87293 0.88484 0.86520 1.20875 1.01024 0.94835 1.04824 1.21077 0.92998 0.97470 0.93664 1.20992 0.96552 0.98159 1.04722 1.20374 0.97431 0.92572 0.90358 1.29687 1.02001 1.25582 1.22828 1.02517 0.72295 0.73870 0.74325 1.93599 1.74639 1.67387 1.59661 1.93758 1.69347 1.82233 1.45868 1.55925 1.33466 1.17709 1.80463 0.95614 0.95161 0.89617 0.92520 0.77897 0.74963 0.85329 0.85437 0.85349 0.85353 0.73478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.87 9.26 37.16 0.34 -3.52 16 2 C 0.27 6.85 2.56 -69.09 -0.18 6.67 16 3 H 0.05 1.41 7.58 -51.93 -0.39 1.01 16 4 C -0.54 -14.09 8.73 -34.45 -0.30 -14.39 16 5 H 0.06 1.48 7.74 -52.48 -0.41 1.07 16 6 C 0.07 1.81 5.30 -17.82 -0.09 1.71 16 7 N -0.88 -25.06 11.32 55.43 0.63 -24.44 16 8 Si 0.90 20.53 29.54 -169.99 -5.02 15.51 16 9 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 10 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 12 N -0.69 -13.84 5.07 -54.94 -0.28 -14.11 16 13 C 0.47 8.81 5.70 -10.98 -0.06 8.75 16 14 O -0.52 -12.01 15.27 5.55 0.08 -11.93 16 15 C 0.35 4.42 4.33 -127.94 -0.55 3.87 16 16 H 0.14 1.07 8.14 -51.93 -0.42 0.64 16 17 N -0.74 -8.57 5.04 -56.10 -0.28 -8.86 16 18 C 0.31 4.40 5.45 -83.84 -0.46 3.95 16 19 C -0.19 -2.33 9.83 -39.27 -0.39 -2.72 16 20 C -0.03 -0.37 10.02 -39.68 -0.40 -0.76 16 21 C -0.18 -2.17 10.06 -39.53 -0.40 -2.56 16 22 C 0.01 0.18 9.74 -39.67 -0.39 -0.21 16 23 C -0.71 -10.99 5.87 -39.48 -0.23 -11.22 16 24 S 2.68 42.91 5.53 -107.50 -0.59 42.32 16 25 O -0.96 -16.31 18.04 -57.10 -1.03 -17.34 16 26 O -0.92 -18.87 16.81 -57.10 -0.96 -19.83 16 27 N -1.11 -13.34 6.22 -8.04 -0.05 -13.39 16 28 H 0.02 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.03 0.81 8.12 -51.93 -0.42 0.39 16 30 H 0.09 2.44 6.07 -51.93 -0.32 2.12 16 31 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 32 H 0.39 6.51 8.54 -40.82 -0.35 6.17 16 33 H 0.41 3.31 8.79 -40.82 -0.36 2.95 16 34 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 35 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 36 H 0.13 1.13 8.06 -52.48 -0.42 0.71 16 37 H 0.13 1.55 8.06 -52.49 -0.42 1.12 16 38 H 0.43 3.55 8.96 -37.52 -0.34 3.21 16 LS Contribution 333.64 15.07 5.03 5.03 Total: -1.00 -37.56 333.64 -9.83 -47.39 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: -4.25 Total: 10.10 kcal Atomic # 6 Polarization: -7.35 SS G_CDS: -3.10 Total: -10.45 kcal Atomic # 7 Polarization: -60.82 SS G_CDS: 0.02 Total: -60.80 kcal Atomic # 8 Polarization: -47.19 SS G_CDS: -1.91 Total: -49.09 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Atomic # 16 Polarization: 42.91 SS G_CDS: -0.59 Total: 42.32 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -37.56 -9.83 -47.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267319385.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.359 kcal (2) G-P(sol) polarization free energy of solvation -37.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds