Wall clock time and date at job start Fri Apr 10 2020 14:50:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 N 1.46500 * 109.47249 * 240.00642 * 2 1 3 5 5 C 1.34770 * 120.00256 * 84.99846 * 4 2 1 6 6 O 1.21706 * 120.00263 * 359.97438 * 5 4 2 7 7 C 1.46587 * 120.00008 * 180.02562 * 5 4 2 8 8 C 1.36648 * 125.45674 * 180.02562 * 7 5 4 9 9 C 1.37478 * 113.29560 * 179.97438 * 8 7 5 10 10 C 1.33814 * 115.10021 * 359.97438 * 9 8 7 11 11 S 1.70624 * 110.95458 * 359.72893 * 10 9 8 12 12 C 1.50698 * 109.47184 * 119.99962 * 2 1 3 13 13 O 1.21281 * 119.99736 * 119.99813 * 12 2 1 14 14 N 1.34770 * 120.00019 * 300.00531 * 12 2 1 15 15 C 1.46512 * 119.99646 * 179.97438 * 14 12 2 16 16 C 1.50705 * 109.46775 * 180.02562 * 15 14 12 17 17 O 1.21289 * 119.99996 * 359.97438 * 16 15 14 18 18 N 1.34770 * 119.99547 * 180.02562 * 16 15 14 19 19 C 1.37101 * 119.99634 * 179.97438 * 18 16 15 20 20 H 1.07993 * 120.00186 * 359.97438 * 19 18 16 21 21 C 1.38953 * 119.99785 * 179.97438 * 19 18 16 22 22 N 1.31410 * 119.99913 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 119.99927 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.46882 * 0.02562 * 23 21 19 25 25 H 1.48506 * 109.46980 * 120.00093 * 23 21 19 26 26 H 1.48498 * 109.46996 * 239.99898 * 23 21 19 27 27 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 29 29 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 30 30 H 0.97005 * 119.99374 * 264.99912 * 4 2 1 31 31 H 1.07996 * 123.35163 * 359.96976 * 8 7 5 32 32 H 1.08000 * 122.44930 * 180.02562 * 9 8 7 33 33 H 1.07998 * 124.52455 * 180.02562 * 10 9 8 34 34 H 0.96992 * 120.00518 * 359.97438 * 14 12 2 35 35 H 1.09001 * 109.47027 * 299.99897 * 15 14 12 36 36 H 1.08992 * 109.46968 * 60.00347 * 15 14 12 37 37 H 0.97004 * 120.00621 * 359.97438 * 18 16 15 38 38 H 0.97002 * 119.99781 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6905 -1.1962 5 6 2.1471 -0.0181 -2.3571 6 8 1.8572 1.1627 -2.4119 7 6 2.6353 -0.7091 -3.5542 8 6 2.8085 -0.1385 -4.7837 9 6 3.2801 -1.0177 -5.7295 10 6 3.4872 -2.2651 -5.2918 11 16 3.1005 -2.4028 -3.6357 12 6 2.0324 -0.7104 1.2304 13 8 2.7296 -1.6965 1.1191 14 7 1.7067 -0.2500 2.4545 15 6 2.1947 -0.9411 3.6507 16 6 1.6919 -0.2310 4.8812 17 8 0.9949 0.7554 4.7699 18 7 2.0174 -0.6915 6.1052 19 6 1.5604 -0.0453 7.2246 20 1 0.9399 0.8330 7.1256 21 6 1.8957 -0.5204 8.4866 22 7 2.6503 -1.5895 8.6071 23 14 1.2736 0.3605 10.0120 24 1 0.4490 1.5276 9.6078 25 1 0.4478 -0.5724 10.8202 26 1 2.4289 0.8262 10.8204 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 2.2491 -1.6317 -1.1527 31 1 2.5959 0.8997 -4.9916 32 1 3.4704 -0.7228 -6.7509 33 1 3.8549 -3.0754 -5.9039 34 1 1.1494 0.5388 2.5436 35 1 1.8310 -1.9686 3.6505 36 1 3.2846 -0.9413 3.6509 37 1 2.5751 -1.4802 6.1942 38 1 2.8847 -1.9209 9.4881 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343544161.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:50:29 Heat of formation + Delta-G solvation = -77.885882 kcal Electronic energy + Delta-G solvation = -23768.482945 eV Core-core repulsion = 19930.653169 eV Total energy + Delta-G solvation = -3837.829775 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.093 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.53562 -39.42815 -38.25652 -37.73144 -35.15837 -34.60772 -33.82853 -31.66439 -31.37497 -29.70503 -27.71319 -25.64413 -24.84549 -23.84366 -21.61018 -20.36973 -19.84639 -19.52214 -19.09108 -18.16994 -17.18111 -16.68109 -16.11313 -15.88264 -15.61328 -15.29488 -15.13968 -14.91234 -14.45768 -14.21934 -14.04494 -13.74964 -13.44148 -13.31600 -13.12719 -12.78085 -12.67249 -12.45098 -12.28013 -12.01893 -11.75408 -11.67192 -11.32348 -11.17549 -10.43978 -10.37253 -10.36275 -9.95865 -9.69250 -9.48655 -9.21025 -8.97499 -8.96328 -8.69837 -8.15063 -6.55942 -3.98044 0.14930 1.10646 1.51818 2.04053 2.55217 2.60347 2.93042 3.07393 3.20072 3.25874 3.34583 3.68043 4.07278 4.43955 4.59679 4.68625 4.79532 4.87310 4.92384 4.98935 5.10080 5.12532 5.42936 5.54398 5.60894 5.79141 5.79991 5.86358 5.93946 5.96647 5.98933 6.06059 6.49115 7.16900 7.42336 7.57317 7.86641 7.87035 8.19277 8.39795 9.00153 9.33919 9.81304 10.60855 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.037070 B = 0.001985 C = 0.001912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.154789 B =14102.116416 C =14642.308293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.128 3.872 3 H 0.119 0.881 4 N -0.708 5.708 5 C 0.595 3.405 6 O -0.529 6.529 7 C -0.267 4.267 8 C -0.055 4.055 9 C -0.151 4.151 10 C -0.232 4.232 11 S 0.212 5.788 12 C 0.510 3.490 13 O -0.546 6.546 14 N -0.698 5.698 15 C 0.108 3.892 16 C 0.426 3.574 17 O -0.596 6.596 18 N -0.548 5.548 19 C -0.305 4.305 20 H 0.107 0.893 21 C 0.026 3.974 22 N -0.894 5.894 23 Si 0.933 3.067 24 H -0.267 1.267 25 H -0.280 1.280 26 H -0.280 1.280 27 H 0.065 0.935 28 H 0.080 0.920 29 H 0.074 0.926 30 H 0.408 0.592 31 H 0.154 0.846 32 H 0.146 0.854 33 H 0.169 0.831 34 H 0.414 0.586 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.396 0.604 38 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.781 -3.322 -24.979 25.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.019 3.981 3 H 0.137 0.863 4 N -0.361 5.361 5 C 0.381 3.619 6 O -0.407 6.407 7 C -0.388 4.388 8 C -0.088 4.088 9 C -0.183 4.183 10 C -0.370 4.370 11 S 0.480 5.520 12 C 0.294 3.706 13 O -0.424 6.424 14 N -0.351 5.351 15 C -0.019 4.019 16 C 0.212 3.788 17 O -0.483 6.483 18 N -0.182 5.182 19 C -0.435 4.435 20 H 0.124 0.876 21 C -0.177 4.177 22 N -0.534 5.534 23 Si 0.760 3.240 24 H -0.191 1.191 25 H -0.206 1.206 26 H -0.206 1.206 27 H 0.084 0.916 28 H 0.099 0.901 29 H 0.093 0.907 30 H 0.245 0.755 31 H 0.172 0.828 32 H 0.163 0.837 33 H 0.187 0.813 34 H 0.253 0.747 35 H 0.104 0.896 36 H 0.104 0.896 37 H 0.230 0.770 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.727 -3.839 -23.871 24.189 hybrid contribution 0.063 0.810 -0.180 0.833 sum 0.791 -3.029 -24.052 24.254 Atomic orbital electron populations 1.22162 0.92306 1.03409 1.04103 1.20779 0.96057 0.98198 0.83022 0.86295 1.45600 1.67406 1.14617 1.08469 1.16890 0.77286 0.86047 0.81655 1.90842 1.50395 1.14813 1.84622 1.24596 1.16315 0.98955 0.98924 1.20817 0.96323 1.01478 0.90223 1.20059 1.04126 0.92463 1.01620 1.25395 1.08351 1.02361 1.00846 1.83283 1.58324 1.05910 1.04529 1.20407 0.80618 0.84853 0.84729 1.90687 1.38471 1.26556 1.86694 1.45616 1.52806 1.32400 1.04323 1.21008 1.00065 0.96625 0.84222 1.19697 0.86816 0.87778 0.84509 1.90506 1.43109 1.28706 1.85988 1.41801 1.44893 1.27363 1.04176 1.19789 1.29690 1.11093 0.82881 0.87552 1.25343 0.96539 0.96351 0.99508 1.69620 1.35904 1.22488 1.25366 0.85748 0.78558 0.79264 0.80468 1.19092 1.20593 1.20587 0.91594 0.90147 0.90681 0.75523 0.82793 0.83657 0.81313 0.74733 0.89592 0.89621 0.77027 0.91594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.69 9.38 37.16 0.35 -1.34 16 2 C 0.13 1.55 2.98 -69.08 -0.21 1.35 16 3 H 0.12 1.46 7.58 -51.93 -0.39 1.07 16 4 N -0.71 -8.36 4.95 -56.27 -0.28 -8.64 16 5 C 0.59 7.44 7.75 -12.90 -0.10 7.34 16 6 O -0.53 -7.99 16.50 5.18 0.09 -7.90 16 7 C -0.27 -2.75 6.45 -36.79 -0.24 -2.99 16 8 C -0.05 -0.49 10.01 -40.43 -0.40 -0.90 16 9 C -0.15 -1.05 10.15 -41.41 -0.42 -1.47 16 10 C -0.23 -1.50 10.92 29.18 0.32 -1.18 16 11 S 0.21 1.65 22.16 -107.50 -2.38 -0.73 16 12 C 0.51 7.40 7.22 -10.99 -0.08 7.32 16 13 O -0.55 -9.16 15.84 5.56 0.09 -9.07 16 14 N -0.70 -10.77 5.42 -61.47 -0.33 -11.10 16 15 C 0.11 1.88 6.15 -5.18 -0.03 1.85 16 16 C 0.43 9.42 7.85 -10.99 -0.09 9.34 16 17 O -0.60 -14.78 15.24 5.55 0.08 -14.69 16 18 N -0.55 -13.22 5.29 -10.96 -0.06 -13.28 16 19 C -0.31 -8.14 9.68 -14.93 -0.14 -8.28 16 20 H 0.11 2.96 7.16 -52.49 -0.38 2.59 16 21 C 0.03 0.66 5.50 -17.47 -0.10 0.56 16 22 N -0.89 -23.47 13.05 55.50 0.72 -22.75 16 23 Si 0.93 20.24 29.55 -169.99 -5.02 15.22 16 24 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 25 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 26 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.08 0.79 7.56 -51.93 -0.39 0.40 16 29 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.41 4.57 6.90 -40.82 -0.28 4.28 16 31 H 0.15 1.30 8.06 -52.49 -0.42 0.88 16 32 H 0.15 0.67 8.06 -52.49 -0.42 0.25 16 33 H 0.17 0.67 8.06 -52.49 -0.42 0.24 16 34 H 0.41 6.29 6.86 -40.82 -0.28 6.01 16 35 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 36 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 37 H 0.40 9.17 7.90 -40.82 -0.32 8.85 16 38 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 LS Contribution 352.38 15.07 5.31 5.31 Total: -1.00 -31.94 352.38 -7.06 -39.00 By element: Atomic # 1 Polarization: 21.18 SS G_CDS: -4.14 Total: 17.04 kcal Atomic # 6 Polarization: 12.74 SS G_CDS: -1.14 Total: 11.60 kcal Atomic # 7 Polarization: -55.83 SS G_CDS: 0.05 Total: -55.77 kcal Atomic # 8 Polarization: -31.92 SS G_CDS: 0.26 Total: -31.67 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.22 kcal Atomic # 16 Polarization: 1.65 SS G_CDS: -2.38 Total: -0.73 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.94 -7.06 -39.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343544161.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.888 kcal (2) G-P(sol) polarization free energy of solvation -31.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds