Wall clock time and date at job start Fri Apr 10 2020 14:50:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 N 1.46500 * 109.47249 * 240.00642 * 2 1 3 5 5 C 1.34770 * 120.00256 * 84.99846 * 4 2 1 6 6 O 1.21706 * 120.00263 * 359.97438 * 5 4 2 7 7 C 1.46587 * 120.00008 * 180.02562 * 5 4 2 8 8 C 1.36648 * 125.45674 * 180.02562 * 7 5 4 9 9 C 1.37478 * 113.29560 * 179.97438 * 8 7 5 10 10 C 1.33814 * 115.10021 * 359.97438 * 9 8 7 11 11 S 1.70624 * 110.95458 * 359.72893 * 10 9 8 12 12 C 1.50698 * 109.47184 * 119.99962 * 2 1 3 13 13 O 1.21281 * 119.99736 * 119.99813 * 12 2 1 14 14 N 1.34770 * 120.00019 * 300.00531 * 12 2 1 15 15 C 1.46512 * 119.99646 * 179.97438 * 14 12 2 16 16 C 1.50705 * 109.46775 * 180.02562 * 15 14 12 17 17 O 1.21289 * 119.99996 * 359.97438 * 16 15 14 18 18 N 1.34770 * 119.99547 * 180.02562 * 16 15 14 19 19 C 1.37101 * 119.99634 * 179.97438 * 18 16 15 20 20 H 1.07993 * 120.00186 * 359.97438 * 19 18 16 21 21 C 1.38953 * 119.99785 * 179.97438 * 19 18 16 22 22 N 1.31410 * 119.99913 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 119.99927 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.46882 * 0.02562 * 23 21 19 25 25 H 1.48506 * 109.46980 * 120.00093 * 23 21 19 26 26 H 1.48498 * 109.46996 * 239.99898 * 23 21 19 27 27 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 29 29 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 30 30 H 0.97005 * 119.99374 * 264.99912 * 4 2 1 31 31 H 1.07996 * 123.35163 * 359.96976 * 8 7 5 32 32 H 1.08000 * 122.44930 * 180.02562 * 9 8 7 33 33 H 1.07998 * 124.52455 * 180.02562 * 10 9 8 34 34 H 0.96992 * 120.00518 * 359.97438 * 14 12 2 35 35 H 1.09001 * 109.47027 * 299.99897 * 15 14 12 36 36 H 1.08992 * 109.46968 * 60.00347 * 15 14 12 37 37 H 0.97004 * 120.00621 * 359.97438 * 18 16 15 38 38 H 0.97002 * 119.99781 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6905 -1.1962 5 6 2.1471 -0.0181 -2.3571 6 8 1.8572 1.1627 -2.4119 7 6 2.6353 -0.7091 -3.5542 8 6 2.8085 -0.1385 -4.7837 9 6 3.2801 -1.0177 -5.7295 10 6 3.4872 -2.2651 -5.2918 11 16 3.1005 -2.4028 -3.6357 12 6 2.0324 -0.7104 1.2304 13 8 2.7296 -1.6965 1.1191 14 7 1.7067 -0.2500 2.4545 15 6 2.1947 -0.9411 3.6507 16 6 1.6919 -0.2310 4.8812 17 8 0.9949 0.7554 4.7699 18 7 2.0174 -0.6915 6.1052 19 6 1.5604 -0.0453 7.2246 20 1 0.9399 0.8330 7.1256 21 6 1.8957 -0.5204 8.4866 22 7 2.6503 -1.5895 8.6071 23 14 1.2736 0.3605 10.0120 24 1 0.4490 1.5276 9.6078 25 1 0.4478 -0.5724 10.8202 26 1 2.4289 0.8262 10.8204 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 2.2491 -1.6317 -1.1527 31 1 2.5959 0.8997 -4.9916 32 1 3.4704 -0.7228 -6.7509 33 1 3.8549 -3.0754 -5.9039 34 1 1.1494 0.5388 2.5436 35 1 1.8310 -1.9686 3.6505 36 1 3.2846 -0.9413 3.6509 37 1 2.5751 -1.4802 6.1942 38 1 2.8847 -1.9209 9.4881 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343544161.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:50:29 Heat of formation + Delta-G solvation = -102.115632 kcal Electronic energy + Delta-G solvation = -23769.533625 eV Core-core repulsion = 19930.653169 eV Total energy + Delta-G solvation = -3838.880456 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.093 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.64027 -40.63304 -39.87806 -38.43077 -36.33594 -36.13682 -35.43844 -33.39203 -32.54161 -30.45538 -29.17658 -26.68485 -26.26802 -24.89890 -22.52150 -21.46245 -21.40881 -20.55170 -20.05867 -19.85066 -18.39988 -17.81404 -17.27229 -16.94166 -16.83406 -16.61268 -16.42341 -16.16591 -15.94791 -15.62193 -15.38789 -14.83290 -14.70716 -14.18399 -13.97007 -13.77371 -13.69278 -13.55636 -13.44322 -13.41841 -13.18386 -12.91859 -12.72826 -12.44572 -12.11476 -11.92594 -11.58083 -11.34514 -11.15385 -10.57311 -10.47590 -10.28541 -10.09001 -9.87363 -9.55217 -8.51567 -6.01387 -0.51533 0.48064 0.93827 1.33653 1.35844 1.39311 1.43207 1.54320 1.59563 1.90568 2.08827 2.18049 2.32644 3.09484 3.15865 3.42458 3.71282 3.93470 4.02244 4.14798 4.20203 4.35310 4.41458 4.42208 4.54674 4.57514 4.71140 5.01765 5.10160 5.11163 5.15246 5.21682 5.36526 5.38811 5.91530 6.24510 6.33035 6.48265 6.91885 6.96102 7.03857 7.44022 7.94287 8.65395 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.037070 B = 0.001985 C = 0.001912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.154789 B =14102.116416 C =14642.308293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.132 3.868 3 H 0.118 0.882 4 N -0.705 5.705 5 C 0.594 3.406 6 O -0.564 6.564 7 C -0.305 4.305 8 C -0.053 4.053 9 C -0.159 4.159 10 C -0.216 4.216 11 S 0.222 5.778 12 C 0.516 3.484 13 O -0.566 6.566 14 N -0.698 5.698 15 C 0.121 3.879 16 C 0.432 3.568 17 O -0.623 6.623 18 N -0.559 5.559 19 C -0.336 4.336 20 H 0.086 0.914 21 C -0.011 4.011 22 N -0.915 5.915 23 Si 0.996 3.004 24 H -0.270 1.270 25 H -0.271 1.271 26 H -0.272 1.272 27 H 0.071 0.929 28 H 0.086 0.914 29 H 0.075 0.925 30 H 0.411 0.589 31 H 0.152 0.848 32 H 0.172 0.828 33 H 0.200 0.800 34 H 0.416 0.584 35 H 0.101 0.899 36 H 0.097 0.903 37 H 0.399 0.601 38 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.067 -4.221 -26.216 26.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.024 3.976 3 H 0.136 0.864 4 N -0.358 5.358 5 C 0.383 3.617 6 O -0.445 6.445 7 C -0.426 4.426 8 C -0.088 4.088 9 C -0.189 4.189 10 C -0.354 4.354 11 S 0.490 5.510 12 C 0.302 3.698 13 O -0.445 6.445 14 N -0.352 5.352 15 C -0.006 4.006 16 C 0.219 3.781 17 O -0.511 6.511 18 N -0.195 5.195 19 C -0.465 4.465 20 H 0.104 0.896 21 C -0.212 4.212 22 N -0.555 5.555 23 Si 0.819 3.181 24 H -0.195 1.195 25 H -0.197 1.197 26 H -0.197 1.197 27 H 0.090 0.910 28 H 0.105 0.895 29 H 0.094 0.906 30 H 0.249 0.751 31 H 0.170 0.830 32 H 0.189 0.811 33 H 0.217 0.783 34 H 0.255 0.745 35 H 0.119 0.881 36 H 0.115 0.885 37 H 0.233 0.767 38 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 1.022 -4.769 -25.121 25.590 hybrid contribution 0.010 1.048 0.073 1.050 sum 1.032 -3.721 -25.048 25.344 Atomic orbital electron populations 1.22126 0.90843 1.03907 1.04448 1.20752 0.97094 0.97704 0.82069 0.86409 1.45594 1.67267 1.14695 1.08243 1.17208 0.76571 0.85719 0.82227 1.90810 1.52172 1.16261 1.85248 1.24502 1.18879 1.00659 0.98515 1.21048 0.95540 1.01860 0.90329 1.20283 1.04004 0.92226 1.02428 1.25820 1.06392 1.03005 1.00145 1.83236 1.58029 1.03964 1.05801 1.20702 0.79853 0.84412 0.84814 1.90678 1.39350 1.27542 1.86942 1.45594 1.53016 1.32450 1.04099 1.20840 1.00550 0.96669 0.82583 1.20427 0.85338 0.87085 0.85245 1.90487 1.44026 1.29963 1.86657 1.41844 1.45527 1.27675 1.04424 1.19765 1.30879 1.11445 0.84414 0.89564 1.26113 0.96389 0.96916 1.01742 1.69679 1.36335 1.23220 1.26309 0.84824 0.78170 0.78097 0.76970 1.19466 1.19660 1.19740 0.91002 0.89518 0.90591 0.75125 0.83041 0.81102 0.78288 0.74479 0.88095 0.88495 0.76653 0.91090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.13 9.38 71.98 0.68 -2.46 16 2 C 0.13 3.16 2.98 44.25 0.13 3.29 16 3 H 0.12 2.89 7.58 -2.39 -0.02 2.87 16 4 N -0.71 -16.50 4.95 -450.16 -2.23 -18.73 16 5 C 0.59 14.96 7.75 86.42 0.67 15.63 16 6 O -0.56 -17.41 16.50 -4.37 -0.07 -17.48 16 7 C -0.31 -6.14 6.45 24.08 0.16 -5.98 16 8 C -0.05 -0.91 10.01 21.72 0.22 -0.69 16 9 C -0.16 -1.83 10.15 21.08 0.21 -1.61 16 10 C -0.22 -2.16 10.92 66.81 0.73 -1.43 16 11 S 0.22 3.12 22.16 -56.49 -1.25 1.87 16 12 C 0.52 14.58 7.22 87.66 0.63 15.21 16 13 O -0.57 -18.42 15.84 -3.03 -0.05 -18.47 16 14 N -0.70 -21.00 5.42 -466.77 -2.53 -23.53 16 15 C 0.12 4.10 6.15 85.63 0.53 4.63 16 16 C 0.43 19.11 7.85 87.66 0.69 19.80 16 17 O -0.62 -31.14 15.24 -3.06 -0.05 -31.19 16 18 N -0.56 -27.25 5.29 -306.99 -1.62 -28.87 16 19 C -0.34 -18.15 9.68 84.04 0.81 -17.34 16 20 H 0.09 4.93 7.16 -2.91 -0.02 4.91 16 21 C -0.01 -0.56 5.50 84.93 0.47 -0.09 16 22 N -0.92 -47.83 13.05 21.66 0.28 -47.55 16 23 Si 1.00 41.27 29.55 68.60 2.03 43.30 16 24 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 25 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 26 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 27 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.09 1.64 7.56 -2.39 -0.02 1.62 16 29 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.41 9.03 6.90 -92.70 -0.64 8.39 16 31 H 0.15 2.55 8.06 -2.91 -0.02 2.52 16 32 H 0.17 1.04 8.06 -2.91 -0.02 1.01 16 33 H 0.20 0.74 8.06 -2.91 -0.02 0.72 16 34 H 0.42 12.44 6.86 -92.71 -0.64 11.80 16 35 H 0.10 3.17 8.14 -2.39 -0.02 3.15 16 36 H 0.10 3.12 8.14 -2.39 -0.02 3.10 16 37 H 0.40 18.63 7.90 -92.71 -0.73 17.90 16 38 H 0.28 13.65 8.31 -92.71 -0.77 12.88 16 Total: -1.00 -68.31 352.38 -0.43 -68.74 By element: Atomic # 1 Polarization: 43.82 SS G_CDS: -0.86 Total: 42.95 kcal Atomic # 6 Polarization: 23.03 SS G_CDS: 5.92 Total: 28.95 kcal Atomic # 7 Polarization: -112.58 SS G_CDS: -6.10 Total: -118.68 kcal Atomic # 8 Polarization: -66.97 SS G_CDS: -0.17 Total: -67.14 kcal Atomic # 14 Polarization: 41.27 SS G_CDS: 2.03 Total: 43.30 kcal Atomic # 16 Polarization: 3.12 SS G_CDS: -1.25 Total: 1.87 kcal Total: -68.31 -0.43 -68.74 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343544161.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.380 kcal (2) G-P(sol) polarization free energy of solvation -68.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds