Wall clock time and date at job start Fri Apr 10 2020 14:50:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.42903 * 109.47028 * 2 1 4 4 C 1.35981 * 116.99935 * 179.97438 * 3 2 1 5 5 C 1.38723 * 119.97577 * 0.02562 * 4 3 2 6 6 C 1.38227 * 120.12568 * 179.97438 * 5 4 3 7 7 C 1.38524 * 120.06418 * 359.97438 * 6 5 4 8 8 O 1.36057 * 120.02345 * 180.02562 * 7 6 5 9 9 C 1.42903 * 116.99987 * 0.02562 * 8 7 6 10 10 C 1.53002 * 109.46625 * 179.97438 * 9 8 7 11 11 C 1.39268 * 119.94829 * 0.02562 * 7 6 5 12 12 N 1.40112 * 120.06183 * 180.02562 * 11 7 6 13 13 C 1.34781 * 120.00118 * 204.53623 * 12 11 7 14 14 O 1.21293 * 119.99787 * 5.52402 * 13 12 11 15 15 C 1.50695 * 120.00055 * 185.52758 * 13 12 11 16 16 S 1.81001 * 109.47218 * 179.97438 * 15 13 12 17 17 C 1.76200 * 100.00106 * 179.97438 * 16 15 13 18 18 H 1.08005 * 119.99858 * 0.02562 * 17 16 15 19 19 C 1.38791 * 119.99904 * 179.97438 * 17 16 15 20 20 N 1.31630 * 120.00159 * 180.02562 * 19 17 16 21 21 Si 1.86802 * 120.00205 * 0.02562 * 19 17 16 22 22 H 1.48503 * 109.47064 * 89.99780 * 21 19 17 23 23 H 1.48500 * 109.47435 * 209.99897 * 21 19 17 24 24 H 1.48493 * 109.47178 * 330.00023 * 21 19 17 25 25 C 1.38622 * 119.97268 * 179.72149 * 4 3 2 26 26 H 1.09002 * 109.47148 * 59.99930 * 1 2 3 27 27 H 1.09000 * 109.47237 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47210 * 300.00231 * 1 2 3 29 29 H 1.09001 * 109.47666 * 240.00046 * 2 1 3 30 30 H 1.09005 * 109.47363 * 119.99340 * 2 1 3 31 31 H 1.08002 * 119.93195 * 359.97438 * 5 4 3 32 32 H 1.07989 * 119.96806 * 180.02562 * 6 5 4 33 33 H 1.08996 * 109.47201 * 299.99408 * 9 8 7 34 34 H 1.09002 * 109.46886 * 59.99770 * 9 8 7 35 35 H 1.09002 * 109.47259 * 60.00509 * 10 9 8 36 36 H 1.09005 * 109.46531 * 180.02562 * 10 9 8 37 37 H 1.09000 * 109.47282 * 299.99392 * 10 9 8 38 38 H 0.97005 * 119.99839 * 24.52454 * 12 11 7 39 39 H 1.08998 * 109.47530 * 299.99701 * 15 13 12 40 40 H 1.09002 * 109.47164 * 59.99795 * 15 13 12 41 41 H 0.96999 * 120.00543 * 180.02562 * 20 19 17 42 42 H 1.08008 * 120.03312 * 0.02562 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3543 1.5255 0.0005 5 6 4.1989 0.4250 0.0005 6 6 5.5697 0.6025 0.0005 7 6 6.1040 1.8806 0.0000 8 8 7.4534 2.0544 -0.0005 9 6 8.2595 0.8744 -0.0010 10 6 9.7383 1.2671 -0.0022 11 6 5.2587 2.9875 0.0001 12 7 5.7965 4.2813 -0.0010 13 6 5.0751 5.3114 0.4837 14 8 4.0027 5.1053 1.0117 15 6 5.6007 6.7191 0.3695 16 16 4.4123 7.8685 1.1064 17 6 5.2565 9.3924 0.8424 18 1 6.2176 9.3990 0.3497 19 6 4.6859 10.5843 1.2666 20 7 5.3162 11.7228 1.0689 21 14 3.0232 10.5729 2.1180 22 1 3.2185 10.4330 3.5835 23 1 2.3121 11.8450 1.8326 24 1 2.2173 9.4317 1.6149 25 6 3.8836 2.8067 -0.0053 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5137 0.8901 31 1 3.7845 -0.5724 0.0005 32 1 6.2249 -0.2560 0.0001 33 1 8.0406 0.2845 0.8889 34 1 8.0397 0.2847 -0.8910 35 1 9.9583 1.8570 0.8876 36 1 10.3531 0.3670 -0.0031 37 1 9.9569 1.8568 -0.8924 38 1 6.6882 4.4356 -0.3504 39 1 6.5531 6.7950 0.8939 40 1 5.7437 6.9693 -0.6817 41 1 4.9176 12.5559 1.3657 42 1 3.2257 3.6633 -0.0098 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000031546022.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:50:21 Heat of formation + Delta-G solvation = -86.385276 kcal Electronic energy + Delta-G solvation = -24522.952829 eV Core-core repulsion = 20788.294836 eV Total energy + Delta-G solvation = -3734.657993 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.118 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.95144 -39.42558 -39.13965 -36.63120 -34.46663 -32.43957 -32.21102 -31.75187 -30.75678 -29.02404 -27.99778 -25.61998 -24.60924 -23.81665 -22.24119 -21.78498 -20.28033 -18.89417 -18.03997 -17.85612 -16.84995 -16.46000 -16.37098 -16.16635 -15.70248 -15.10667 -14.97133 -14.77254 -14.17985 -13.94567 -13.76586 -13.59778 -13.43556 -13.14496 -12.88215 -12.83384 -12.79703 -12.56702 -12.36255 -12.31928 -11.87124 -11.63576 -11.27776 -11.19656 -11.08230 -11.00598 -10.69747 -10.60422 -10.24753 -9.85478 -9.49145 -9.00229 -8.52057 -8.40117 -7.64036 -6.92799 -6.28765 -4.01076 1.12220 1.35094 2.64742 2.81921 2.94601 3.04051 3.32371 3.35407 3.51284 3.61832 3.70914 4.33324 4.50459 4.62388 4.66783 4.68122 4.70508 4.77365 4.84710 4.92652 4.94695 5.01702 5.10327 5.14868 5.23720 5.32754 5.39219 5.48910 5.54821 5.70344 5.72464 5.77305 5.78972 5.83324 5.97788 6.02556 6.19160 6.31607 6.68282 7.16749 7.41225 7.47703 7.94241 8.31522 8.42031 9.17206 10.80433 Molecular weight = 325.12amu Principal moments of inertia in cm(-1) A = 0.010865 B = 0.003248 C = 0.002532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2576.422786 B = 8617.985784 C =11057.507727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.056 3.944 3 O -0.311 6.311 4 C 0.120 3.880 5 C -0.197 4.197 6 C -0.149 4.149 7 C 0.060 3.940 8 O -0.318 6.318 9 C 0.058 3.942 10 C -0.153 4.153 11 C 0.176 3.824 12 N -0.665 5.665 13 C 0.530 3.470 14 O -0.495 6.495 15 C -0.124 4.124 16 S -0.137 6.137 17 C -0.522 4.522 18 H 0.089 0.911 19 C 0.096 3.904 20 N -0.880 5.880 21 Si 0.856 3.144 22 H -0.267 1.267 23 H -0.274 1.274 24 H -0.235 1.235 25 C -0.133 4.133 26 H 0.067 0.933 27 H 0.076 0.924 28 H 0.067 0.933 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.128 0.872 32 H 0.131 0.869 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.067 0.933 36 H 0.076 0.924 37 H 0.067 0.933 38 H 0.417 0.583 39 H 0.101 0.899 40 H 0.103 0.897 41 H 0.271 0.729 42 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.986 -28.381 -4.446 28.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.020 4.020 3 O -0.225 6.225 4 C 0.074 3.926 5 C -0.217 4.217 6 C -0.168 4.168 7 C 0.013 3.987 8 O -0.233 6.233 9 C -0.017 4.017 10 C -0.210 4.210 11 C 0.079 3.921 12 N -0.311 5.311 13 C 0.317 3.683 14 O -0.368 6.368 15 C -0.274 4.274 16 S 0.089 5.911 17 C -0.669 4.669 18 H 0.107 0.893 19 C -0.113 4.113 20 N -0.517 5.517 21 Si 0.681 3.319 22 H -0.192 1.192 23 H -0.199 1.199 24 H -0.159 1.159 25 C -0.154 4.154 26 H 0.086 0.914 27 H 0.095 0.905 28 H 0.086 0.914 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.146 0.854 32 H 0.149 0.851 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.086 0.914 36 H 0.095 0.905 37 H 0.086 0.914 38 H 0.253 0.747 39 H 0.119 0.881 40 H 0.121 0.879 41 H 0.081 0.919 42 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 0.178 -28.101 -3.556 28.326 hybrid contribution 1.246 0.027 -0.375 1.302 sum 1.425 -28.074 -3.931 28.384 Atomic orbital electron populations 1.21775 0.92806 1.02628 1.03801 1.22747 0.95894 0.82255 1.01084 1.86128 1.18730 1.28788 1.88883 1.18603 0.82477 0.93266 0.98207 1.20926 0.93328 0.98038 1.09384 1.20719 0.95470 0.95149 1.05484 1.18458 0.82584 0.92518 1.05170 1.86018 1.13702 1.33757 1.89777 1.22722 0.91054 0.86805 1.01108 1.21779 0.92794 1.02700 1.03728 1.16744 0.90571 0.82900 1.01874 1.43479 1.20406 1.04814 1.62400 1.20526 0.84758 0.86282 0.76717 1.90684 1.21295 1.84524 1.40316 1.23283 1.04843 0.93138 1.06169 1.84808 1.27533 1.00773 1.78000 1.22306 1.08836 0.90168 1.45619 0.89281 1.24705 0.97765 0.94305 0.94496 1.69935 1.38570 0.97870 1.45276 0.86742 0.84387 0.79676 0.81102 1.19185 1.19912 1.15869 1.20509 0.93083 0.96828 1.04946 0.91435 0.90545 0.91362 0.92247 0.92215 0.85415 0.85079 0.92234 0.92268 0.91377 0.90508 0.91436 0.74691 0.88056 0.87905 0.91913 0.81859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 10.28 37.15 0.38 -0.73 16 2 C 0.06 0.49 5.46 37.15 0.20 0.69 16 3 O -0.31 -4.15 10.14 -19.68 -0.20 -4.35 16 4 C 0.12 1.66 6.68 -39.26 -0.26 1.39 16 5 C -0.20 -2.17 9.03 -39.41 -0.36 -2.53 16 6 C -0.15 -1.58 9.03 -39.48 -0.36 -1.94 16 7 C 0.06 0.75 6.70 -39.09 -0.26 0.49 16 8 O -0.32 -3.57 9.54 -19.92 -0.19 -3.76 16 9 C 0.06 0.44 5.46 37.16 0.20 0.65 16 10 C -0.15 -0.95 10.28 37.16 0.38 -0.57 16 11 C 0.18 2.61 6.44 -83.52 -0.54 2.07 16 12 N -0.67 -9.82 5.29 -9.76 -0.05 -9.88 16 13 C 0.53 9.68 7.65 -10.99 -0.08 9.59 16 14 O -0.50 -10.65 13.03 5.55 0.07 -10.57 16 15 C -0.12 -2.39 6.16 36.00 0.22 -2.17 16 16 S -0.14 -3.47 18.55 -107.50 -1.99 -5.46 16 17 C -0.52 -14.99 10.04 30.94 0.31 -14.68 16 18 H 0.09 2.66 8.03 -52.48 -0.42 2.24 16 19 C 0.10 2.81 5.50 -17.43 -0.10 2.71 16 20 N -0.88 -26.59 13.97 55.49 0.78 -25.81 16 21 Si 0.86 21.81 27.74 -169.99 -4.72 17.09 16 22 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 24 H -0.23 -5.96 6.74 56.52 0.38 -5.58 16 25 C -0.13 -2.11 8.65 -39.27 -0.34 -2.45 16 26 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.43 7.66 -51.93 -0.40 0.04 16 30 H 0.06 0.46 7.66 -51.93 -0.40 0.06 16 31 H 0.13 1.05 6.28 -52.49 -0.33 0.72 16 32 H 0.13 1.01 6.29 -52.49 -0.33 0.68 16 33 H 0.06 0.41 7.66 -51.93 -0.40 0.01 16 34 H 0.06 0.38 7.66 -51.93 -0.40 -0.02 16 35 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.42 5.04 8.34 -40.82 -0.34 4.70 16 39 H 0.10 1.81 8.14 -51.92 -0.42 1.39 16 40 H 0.10 1.83 8.14 -51.91 -0.42 1.41 16 41 H 0.27 7.60 8.31 -40.82 -0.34 7.27 16 42 H 0.16 3.00 5.79 -52.48 -0.30 2.69 16 LS Contribution 365.40 15.07 5.51 5.51 Total: -1.00 -34.39 365.40 -7.24 -41.63 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -5.85 Total: 3.07 kcal Atomic # 6 Polarization: -6.88 SS G_CDS: -0.59 Total: -7.47 kcal Atomic # 7 Polarization: -36.41 SS G_CDS: 0.72 Total: -35.69 kcal Atomic # 8 Polarization: -18.37 SS G_CDS: -0.32 Total: -18.68 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.72 Total: 17.09 kcal Atomic # 16 Polarization: -3.47 SS G_CDS: -1.99 Total: -5.46 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -34.39 -7.24 -41.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000031546022.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.752 kcal (2) G-P(sol) polarization free energy of solvation -34.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds