Wall clock time and date at job start Fri Apr 10 2020 14:50:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.42903 * 109.47028 * 2 1 4 4 C 1.35981 * 116.99935 * 179.97438 * 3 2 1 5 5 C 1.38723 * 119.97577 * 0.02562 * 4 3 2 6 6 C 1.38227 * 120.12568 * 179.97438 * 5 4 3 7 7 C 1.38524 * 120.06418 * 359.97438 * 6 5 4 8 8 O 1.36057 * 120.02345 * 180.02562 * 7 6 5 9 9 C 1.42903 * 116.99987 * 0.02562 * 8 7 6 10 10 C 1.53002 * 109.46625 * 179.97438 * 9 8 7 11 11 C 1.39268 * 119.94829 * 0.02562 * 7 6 5 12 12 N 1.40112 * 120.06183 * 180.02562 * 11 7 6 13 13 C 1.34781 * 120.00118 * 204.53623 * 12 11 7 14 14 O 1.21293 * 119.99787 * 5.52402 * 13 12 11 15 15 C 1.50695 * 120.00055 * 185.52758 * 13 12 11 16 16 S 1.81001 * 109.47218 * 179.97438 * 15 13 12 17 17 C 1.76200 * 100.00106 * 179.97438 * 16 15 13 18 18 H 1.08005 * 119.99858 * 0.02562 * 17 16 15 19 19 C 1.38791 * 119.99904 * 179.97438 * 17 16 15 20 20 N 1.31630 * 120.00159 * 180.02562 * 19 17 16 21 21 Si 1.86802 * 120.00205 * 0.02562 * 19 17 16 22 22 H 1.48503 * 109.47064 * 89.99780 * 21 19 17 23 23 H 1.48500 * 109.47435 * 209.99897 * 21 19 17 24 24 H 1.48493 * 109.47178 * 330.00023 * 21 19 17 25 25 C 1.38622 * 119.97268 * 179.72149 * 4 3 2 26 26 H 1.09002 * 109.47148 * 59.99930 * 1 2 3 27 27 H 1.09000 * 109.47237 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47210 * 300.00231 * 1 2 3 29 29 H 1.09001 * 109.47666 * 240.00046 * 2 1 3 30 30 H 1.09005 * 109.47363 * 119.99340 * 2 1 3 31 31 H 1.08002 * 119.93195 * 359.97438 * 5 4 3 32 32 H 1.07989 * 119.96806 * 180.02562 * 6 5 4 33 33 H 1.08996 * 109.47201 * 299.99408 * 9 8 7 34 34 H 1.09002 * 109.46886 * 59.99770 * 9 8 7 35 35 H 1.09002 * 109.47259 * 60.00509 * 10 9 8 36 36 H 1.09005 * 109.46531 * 180.02562 * 10 9 8 37 37 H 1.09000 * 109.47282 * 299.99392 * 10 9 8 38 38 H 0.97005 * 119.99839 * 24.52454 * 12 11 7 39 39 H 1.08998 * 109.47530 * 299.99701 * 15 13 12 40 40 H 1.09002 * 109.47164 * 59.99795 * 15 13 12 41 41 H 0.96999 * 120.00543 * 180.02562 * 20 19 17 42 42 H 1.08008 * 120.03312 * 0.02562 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3543 1.5255 0.0005 5 6 4.1989 0.4250 0.0005 6 6 5.5697 0.6025 0.0005 7 6 6.1040 1.8806 0.0000 8 8 7.4534 2.0544 -0.0005 9 6 8.2595 0.8744 -0.0010 10 6 9.7383 1.2671 -0.0022 11 6 5.2587 2.9875 0.0001 12 7 5.7965 4.2813 -0.0010 13 6 5.0751 5.3114 0.4837 14 8 4.0027 5.1053 1.0117 15 6 5.6007 6.7191 0.3695 16 16 4.4123 7.8685 1.1064 17 6 5.2565 9.3924 0.8424 18 1 6.2176 9.3990 0.3497 19 6 4.6859 10.5843 1.2666 20 7 5.3162 11.7228 1.0689 21 14 3.0232 10.5729 2.1180 22 1 3.2185 10.4330 3.5835 23 1 2.3121 11.8450 1.8326 24 1 2.2173 9.4317 1.6149 25 6 3.8836 2.8067 -0.0053 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5137 0.8901 31 1 3.7845 -0.5724 0.0005 32 1 6.2249 -0.2560 0.0001 33 1 8.0406 0.2845 0.8889 34 1 8.0397 0.2847 -0.8910 35 1 9.9583 1.8570 0.8876 36 1 10.3531 0.3670 -0.0031 37 1 9.9569 1.8568 -0.8924 38 1 6.6882 4.4356 -0.3504 39 1 6.5531 6.7950 0.8939 40 1 5.7437 6.9693 -0.6817 41 1 4.9176 12.5559 1.3657 42 1 3.2257 3.6633 -0.0098 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000031546022.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:50:20 Heat of formation + Delta-G solvation = -109.606679 kcal Electronic energy + Delta-G solvation = -24523.959785 eV Core-core repulsion = 20788.294836 eV Total energy + Delta-G solvation = -3735.664949 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.118 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.01026 -40.61095 -40.02712 -37.60864 -35.68036 -34.68222 -32.87393 -32.44770 -31.95611 -30.17987 -29.05343 -27.85981 -25.41345 -24.54875 -23.19580 -22.65199 -21.52171 -20.12628 -19.61502 -18.86688 -18.19417 -17.55008 -17.25407 -17.11546 -16.91124 -16.79016 -16.37148 -15.92934 -15.55331 -15.21918 -14.93988 -14.77026 -14.65530 -14.41983 -13.88279 -13.76802 -13.54211 -13.37455 -13.35107 -13.20747 -13.12093 -13.03503 -12.75771 -12.67345 -12.27972 -11.92703 -11.89678 -11.83798 -11.59660 -11.18102 -11.11561 -10.89606 -10.56871 -9.49866 -9.02250 -8.59391 -8.52440 -6.23786 0.09306 0.38360 0.92389 1.30823 1.43581 1.44731 1.51784 1.96891 2.16334 2.24045 2.38766 2.67780 2.70919 2.85830 3.64221 3.74250 3.94379 4.06290 4.08819 4.12235 4.13263 4.16912 4.23846 4.38523 4.40376 4.41033 4.47426 4.56383 4.67162 4.88072 4.93945 4.95363 5.00256 5.10340 5.15307 5.25385 5.30469 5.35152 5.59042 5.70148 6.11059 6.26132 6.34618 6.54307 6.92514 6.97789 8.60010 Molecular weight = 325.12amu Principal moments of inertia in cm(-1) A = 0.010865 B = 0.003248 C = 0.002532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2576.422786 B = 8617.985784 C =11057.507727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.045 3.955 3 O -0.340 6.340 4 C 0.106 3.894 5 C -0.181 4.181 6 C -0.139 4.139 7 C 0.064 3.936 8 O -0.331 6.331 9 C 0.047 3.953 10 C -0.152 4.152 11 C 0.147 3.853 12 N -0.647 5.647 13 C 0.534 3.466 14 O -0.534 6.534 15 C -0.109 4.109 16 S -0.169 6.169 17 C -0.529 4.529 18 H 0.064 0.936 19 C 0.047 3.953 20 N -0.916 5.916 21 Si 0.913 3.087 22 H -0.262 1.262 23 H -0.258 1.258 24 H -0.237 1.237 25 C -0.160 4.160 26 H 0.059 0.941 27 H 0.105 0.895 28 H 0.055 0.945 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.163 0.837 32 H 0.170 0.830 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.057 0.943 36 H 0.100 0.900 37 H 0.062 0.938 38 H 0.429 0.571 39 H 0.119 0.881 40 H 0.120 0.880 41 H 0.277 0.723 42 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.559 -32.088 -4.588 32.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.029 4.029 3 O -0.255 6.255 4 C 0.061 3.939 5 C -0.200 4.200 6 C -0.158 4.158 7 C 0.017 3.983 8 O -0.246 6.246 9 C -0.027 4.027 10 C -0.208 4.208 11 C 0.051 3.949 12 N -0.293 5.293 13 C 0.322 3.678 14 O -0.410 6.410 15 C -0.260 4.260 16 S 0.057 5.943 17 C -0.676 4.676 18 H 0.083 0.917 19 C -0.159 4.159 20 N -0.554 5.554 21 Si 0.735 3.265 22 H -0.187 1.187 23 H -0.182 1.182 24 H -0.161 1.161 25 C -0.181 4.181 26 H 0.078 0.922 27 H 0.124 0.876 28 H 0.074 0.926 29 H 0.097 0.903 30 H 0.093 0.907 31 H 0.181 0.819 32 H 0.188 0.812 33 H 0.090 0.910 34 H 0.096 0.904 35 H 0.076 0.924 36 H 0.119 0.881 37 H 0.081 0.919 38 H 0.268 0.732 39 H 0.137 0.863 40 H 0.138 0.862 41 H 0.087 0.913 42 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 0.788 -31.841 -3.721 32.068 hybrid contribution 1.190 0.954 -0.408 1.579 sum 1.978 -30.887 -4.129 31.225 Atomic orbital electron populations 1.21827 0.92055 1.04216 1.02821 1.23105 0.96615 0.80564 1.02657 1.86108 1.18710 1.31706 1.88956 1.18714 0.83213 0.93276 0.98735 1.21301 0.93225 0.98617 1.06857 1.21168 0.95808 0.95452 1.03367 1.18490 0.83161 0.92389 1.04244 1.86021 1.13092 1.36024 1.89511 1.23075 0.91015 0.86014 1.02584 1.21814 0.92379 1.03655 1.03001 1.16872 0.90748 0.83128 1.04121 1.43146 1.20398 1.04468 1.61330 1.20222 0.84418 0.86427 0.76774 1.90686 1.22916 1.84962 1.42419 1.23238 1.03573 0.92403 1.06775 1.84733 1.29851 1.00634 1.79051 1.22447 1.08168 0.92056 1.44969 0.91743 1.25538 1.01114 0.94049 0.95180 1.70010 1.40311 0.98624 1.46488 0.85888 0.80408 0.80102 0.80116 1.18668 1.18223 1.16126 1.20349 0.93437 0.97008 1.07329 0.92224 0.87608 0.92567 0.90289 0.90744 0.81945 0.81238 0.90962 0.90384 0.92410 0.88110 0.91883 0.73232 0.86290 0.86207 0.91313 0.85413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 10.28 71.98 0.74 -1.27 16 2 C 0.04 0.70 5.46 71.98 0.39 1.09 16 3 O -0.34 -9.01 10.14 -93.33 -0.95 -9.96 16 4 C 0.11 2.87 6.68 22.48 0.15 3.02 16 5 C -0.18 -3.41 9.03 22.38 0.20 -3.21 16 6 C -0.14 -2.43 9.03 22.34 0.20 -2.23 16 7 C 0.06 1.48 6.70 22.59 0.15 1.63 16 8 O -0.33 -6.65 9.54 -94.20 -0.90 -7.55 16 9 C 0.05 0.55 5.46 71.98 0.39 0.95 16 10 C -0.15 -1.47 10.28 71.98 0.74 -0.73 16 11 C 0.15 4.34 6.44 38.18 0.25 4.59 16 12 N -0.65 -19.15 5.29 -303.18 -1.60 -20.75 16 13 C 0.53 19.91 7.65 87.65 0.67 20.58 16 14 O -0.53 -23.92 13.03 -3.07 -0.04 -23.96 16 15 C -0.11 -4.24 6.16 71.23 0.44 -3.80 16 16 S -0.17 -8.68 18.55 -56.49 -1.05 -9.73 16 17 C -0.53 -31.06 10.04 67.95 0.68 -30.37 16 18 H 0.06 3.97 8.03 -2.91 -0.02 3.95 16 19 C 0.05 2.77 5.50 84.86 0.47 3.23 16 20 N -0.92 -56.24 13.97 21.65 0.30 -55.94 16 21 Si 0.91 45.53 27.74 68.60 1.90 47.43 16 22 H -0.26 -12.75 7.11 99.48 0.71 -12.05 16 23 H -0.26 -12.04 7.11 99.48 0.71 -11.34 16 24 H -0.24 -11.85 6.74 99.48 0.67 -11.18 16 25 C -0.16 -5.26 8.65 22.47 0.19 -5.07 16 26 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.08 0.91 7.66 -2.39 -0.02 0.89 16 30 H 0.07 0.93 7.66 -2.38 -0.02 0.91 16 31 H 0.16 1.89 6.28 -2.91 -0.02 1.87 16 32 H 0.17 1.64 6.29 -2.92 -0.02 1.62 16 33 H 0.07 0.68 7.66 -2.39 -0.02 0.66 16 34 H 0.08 0.64 7.66 -2.39 -0.02 0.62 16 35 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 36 H 0.10 0.50 8.14 -2.38 -0.02 0.48 16 37 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 38 H 0.43 10.11 8.34 -92.70 -0.77 9.34 16 39 H 0.12 4.21 8.14 -2.40 -0.02 4.19 16 40 H 0.12 4.25 8.14 -2.39 -0.02 4.23 16 41 H 0.28 15.73 8.31 -92.71 -0.77 14.96 16 42 H 0.13 5.09 5.79 -2.91 -0.02 5.07 16 Total: -1.00 -77.65 365.40 3.58 -74.08 By element: Atomic # 1 Polarization: 17.73 SS G_CDS: 0.24 Total: 17.96 kcal Atomic # 6 Polarization: -17.26 SS G_CDS: 5.67 Total: -11.59 kcal Atomic # 7 Polarization: -75.39 SS G_CDS: -1.30 Total: -76.69 kcal Atomic # 8 Polarization: -39.58 SS G_CDS: -1.89 Total: -41.46 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 1.90 Total: 47.43 kcal Atomic # 16 Polarization: -8.68 SS G_CDS: -1.05 Total: -9.73 kcal Total: -77.65 3.58 -74.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000031546022.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.528 kcal (2) G-P(sol) polarization free energy of solvation -77.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds