Wall clock time and date at job start Fri Apr 10 2020 14:49:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.46639 * 2 1 4 4 C 1.52997 * 109.47246 * 240.00006 * 2 1 3 5 5 N 1.46495 * 109.47392 * 180.02562 * 4 2 1 6 6 C 1.34773 * 120.00370 * 180.02562 * 5 4 2 7 7 O 1.21281 * 119.99648 * 359.97438 * 6 5 4 8 8 C 1.50697 * 120.00166 * 179.72270 * 6 5 4 9 9 C 1.50702 * 109.47043 * 180.27057 * 8 6 5 10 10 C 1.37646 * 120.12793 * 264.99588 * 9 8 6 11 11 C 1.38612 * 120.24483 * 179.97438 * 10 9 8 12 12 C 1.38647 * 120.50287 * 0.02822 * 11 10 9 13 13 C 1.37598 * 120.25459 * 0.02562 * 12 11 10 14 14 C 1.40691 * 120.12835 * 84.73100 * 9 8 6 15 15 C 1.41403 * 120.24437 * 359.97438 * 14 9 8 16 16 H 1.07999 * 119.99318 * 329.70451 * 15 14 9 17 17 C 1.39944 * 119.99919 * 149.70897 * 15 14 9 18 18 N 1.30826 * 119.99809 * 162.01743 * 17 15 14 19 19 Si 1.86800 * 120.00004 * 342.01074 * 17 15 14 20 20 H 1.48498 * 109.46635 * 95.40751 * 19 17 15 21 21 H 1.48503 * 109.46903 * 215.40215 * 19 17 15 22 22 H 1.48499 * 109.47177 * 335.40445 * 19 17 15 23 23 S 1.81394 * 109.47214 * 119.99803 * 2 1 3 24 24 C 1.81400 * 101.92307 * 304.99983 * 23 2 1 25 25 O 1.42102 * 108.57929 * 59.48666 * 23 2 1 26 26 O 1.42101 * 108.58066 * 190.51438 * 23 2 1 27 27 H 1.09005 * 109.47135 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47336 * 300.00076 * 1 2 3 29 29 H 1.09004 * 109.47261 * 60.00162 * 1 2 3 30 30 H 1.09004 * 109.47127 * 59.99750 * 4 2 1 31 31 H 1.09005 * 109.46936 * 299.99979 * 4 2 1 32 32 H 0.97005 * 119.99914 * 359.97438 * 5 4 2 33 33 H 1.08998 * 109.47615 * 300.27433 * 8 6 5 34 34 H 1.09008 * 109.47332 * 60.27354 * 8 6 5 35 35 H 1.07998 * 119.87310 * 0.02562 * 10 9 8 36 36 H 1.08005 * 119.74413 * 180.02562 * 11 10 9 37 37 H 1.08004 * 119.87459 * 179.97438 * 12 11 10 38 38 H 1.07994 * 120.13201 * 179.97438 * 13 12 11 39 39 H 0.96995 * 119.99846 * 179.97438 * 18 17 15 40 40 H 1.09007 * 109.47209 * 59.99743 * 24 23 2 41 41 H 1.09000 * 109.47520 * 179.97438 * 24 23 2 42 42 H 1.08999 * 109.47302 * 300.00171 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 3.5049 -0.7218 -1.2489 6 6 4.1789 -1.3050 -2.2599 7 8 3.5724 -1.8298 -3.1697 8 6 5.6858 -1.3001 -2.2627 9 6 6.1881 -2.0053 -3.4962 10 6 6.5208 -3.3398 -3.4419 11 6 6.9825 -3.9910 -4.5750 12 6 7.1154 -3.3079 -5.7743 13 6 6.7898 -1.9733 -5.8516 14 6 6.3136 -1.3035 -4.7091 15 6 5.9690 0.0662 -4.7785 16 1 5.1966 0.4618 -4.1356 17 6 6.6288 0.9089 -5.6801 18 7 6.1006 2.0607 -6.0054 19 14 8.2639 0.3892 -6.4189 20 1 8.0304 -0.2430 -7.7421 21 1 9.1327 1.5819 -6.5866 22 1 8.9284 -0.5841 -5.5154 23 16 2.1347 -0.8550 1.4811 24 6 1.2998 0.0578 2.8079 25 8 1.6408 -2.1874 1.4680 26 8 3.5342 -0.6349 1.5914 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.6766 -0.2074 -2.1392 31 1 1.6766 -1.7489 -1.2492 32 1 3.9900 -0.3017 -0.5214 33 1 6.0459 -0.2713 -2.2604 34 1 6.0526 -1.8154 -1.3749 35 1 6.4208 -3.8817 -2.5130 36 1 7.2409 -5.0384 -4.5233 37 1 7.4765 -3.8252 -6.6509 38 1 6.8944 -1.4431 -6.7866 39 1 6.5581 2.6449 -6.6300 40 1 0.2202 -0.0208 2.6794 41 1 1.5822 -0.3639 3.7725 42 1 1.5949 1.1063 2.7690 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000777058820.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:49:54 Heat of formation + Delta-G solvation = -92.072532 kcal Electronic energy + Delta-G solvation = -25629.332724 eV Core-core repulsion = 21894.428113 eV Total energy + Delta-G solvation = -3734.904611 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.118 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.35313 -37.65062 -37.30309 -36.33469 -35.87117 -33.52225 -32.89287 -31.72841 -30.25240 -29.89687 -27.55608 -25.84109 -24.64077 -22.85259 -21.34069 -20.53824 -19.41120 -18.99569 -17.44591 -17.28967 -16.87366 -16.34829 -16.05636 -15.78453 -15.49044 -14.94050 -14.48316 -14.17926 -13.90251 -13.68145 -13.60763 -13.51161 -13.29481 -13.03641 -12.70137 -12.60777 -12.54521 -12.31354 -12.24240 -12.04116 -11.83284 -11.76907 -11.36153 -11.30358 -11.02752 -10.74444 -10.66317 -10.54813 -10.18440 -9.64100 -9.49629 -9.21443 -9.05983 -8.82024 -7.52026 -7.42972 -6.87794 -4.41135 -0.37885 2.36241 2.62514 2.79051 3.17350 3.23851 3.27646 3.34169 3.38177 3.40673 3.73413 4.04721 4.10765 4.24983 4.38740 4.58715 4.61221 4.71400 5.01279 5.17819 5.25172 5.37987 5.52430 5.61762 5.64042 5.79752 5.96944 6.06632 6.18433 6.27207 6.38624 6.63530 6.69562 6.80055 7.02570 7.28038 7.50134 7.73877 7.81072 7.89098 7.98552 8.22181 8.42693 8.75742 8.83122 8.89318 10.14590 Molecular weight = 325.12amu Principal moments of inertia in cm(-1) A = 0.018440 B = 0.003409 C = 0.003125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.053220 B = 8212.290272 C = 8957.176144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.586 4.586 3 H 0.145 0.855 4 C 0.136 3.864 5 N -0.761 5.761 6 C 0.521 3.479 7 O -0.517 6.517 8 C -0.076 4.076 9 C -0.166 4.166 10 C -0.069 4.069 11 C -0.241 4.241 12 C -0.081 4.081 13 C -0.234 4.234 14 C 0.110 3.890 15 C -0.445 4.445 16 H 0.089 0.911 17 C 0.085 3.915 18 N -0.812 5.812 19 Si 0.910 3.090 20 H -0.272 1.272 21 H -0.293 1.293 22 H -0.243 1.243 23 S 2.417 3.583 24 C -0.660 4.660 25 O -0.930 6.930 26 O -0.933 6.933 27 H 0.080 0.920 28 H 0.073 0.927 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.083 0.917 32 H 0.405 0.595 33 H 0.103 0.897 34 H 0.083 0.917 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.099 0.901 39 H 0.283 0.717 40 H 0.130 0.870 41 H 0.130 0.870 42 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.464 1.139 16.065 18.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.695 4.695 3 H 0.163 0.837 4 C 0.010 3.990 5 N -0.421 5.421 6 C 0.309 3.691 7 O -0.390 6.390 8 C -0.116 4.116 9 C -0.167 4.167 10 C -0.087 4.087 11 C -0.260 4.260 12 C -0.099 4.099 13 C -0.253 4.253 14 C 0.107 3.893 15 C -0.474 4.474 16 H 0.107 0.893 17 C -0.133 4.133 18 N -0.437 5.437 19 Si 0.737 3.263 20 H -0.198 1.198 21 H -0.220 1.220 22 H -0.167 1.167 23 S 2.597 3.403 24 C -0.809 4.809 25 O -0.927 6.927 26 O -0.930 6.930 27 H 0.099 0.901 28 H 0.091 0.909 29 H 0.104 0.896 30 H 0.109 0.891 31 H 0.101 0.899 32 H 0.243 0.757 33 H 0.121 0.879 34 H 0.101 0.899 35 H 0.110 0.890 36 H 0.110 0.890 37 H 0.110 0.890 38 H 0.117 0.883 39 H 0.093 0.907 40 H 0.149 0.851 41 H 0.148 0.852 42 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -9.359 0.310 15.341 17.974 hybrid contribution 0.211 1.014 -0.161 1.048 sum -9.148 1.324 15.180 17.773 Atomic orbital electron populations 1.21678 0.89070 1.04627 1.04753 1.30340 1.07588 1.14125 1.17469 0.83713 1.20989 0.81835 1.00807 0.95333 1.46501 1.05821 1.61974 1.27757 1.21142 0.90980 0.76622 0.80393 1.90690 1.70309 1.43366 1.34681 1.20321 0.89802 1.03454 0.97988 1.19087 1.10171 0.94192 0.93286 1.20465 0.97871 0.93610 0.96793 1.20335 1.13245 0.98417 0.94006 1.20594 0.98526 0.94489 0.96280 1.20993 1.11776 0.94692 0.97817 1.17486 0.88558 0.93382 0.89901 1.19410 1.18179 0.91993 1.17795 0.89337 1.26142 0.99435 0.94331 0.93401 1.69706 1.37273 1.10022 1.26694 0.86343 0.81584 0.78019 0.80393 1.19810 1.22047 1.16651 1.08238 0.76468 0.77153 0.78422 1.30337 1.15111 1.15819 1.19634 1.93605 1.81855 1.31647 1.85590 1.93577 1.27647 1.86499 1.85232 0.90097 0.90864 0.89566 0.89138 0.89879 0.75747 0.87920 0.89861 0.88951 0.88981 0.89025 0.88341 0.90672 0.85133 0.85171 0.85155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.78 8.90 37.16 0.33 -0.45 16 2 C -0.59 -4.61 2.91 -26.73 -0.08 -4.69 16 3 H 0.14 0.80 8.14 -51.92 -0.42 0.38 16 4 C 0.14 1.77 5.11 -4.05 -0.02 1.74 16 5 N -0.76 -12.11 5.22 -60.30 -0.31 -12.43 16 6 C 0.52 10.75 7.42 -10.99 -0.08 10.66 16 7 O -0.52 -12.75 16.03 5.56 0.09 -12.66 16 8 C -0.08 -1.55 5.19 -29.04 -0.15 -1.70 16 9 C -0.17 -3.97 4.43 -103.91 -0.46 -4.43 16 10 C -0.07 -1.56 9.66 -39.66 -0.38 -1.94 16 11 C -0.24 -5.36 10.05 -39.29 -0.39 -5.76 16 12 C -0.08 -1.87 10.02 -39.66 -0.40 -2.27 16 13 C -0.23 -5.97 7.17 -38.87 -0.28 -6.25 16 14 C 0.11 2.89 5.10 -106.82 -0.54 2.34 16 15 C -0.45 -12.20 8.56 -37.74 -0.32 -12.52 16 16 H 0.09 2.54 6.99 -52.49 -0.37 2.17 16 17 C 0.09 2.26 5.41 -17.34 -0.09 2.17 16 18 N -0.81 -21.90 13.93 55.55 0.77 -21.13 16 19 Si 0.91 21.25 24.52 -169.99 -4.17 17.08 16 20 H -0.27 -6.25 6.71 56.52 0.38 -5.87 16 21 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 22 H -0.24 -5.80 6.85 56.52 0.39 -5.41 16 23 S 2.42 21.13 4.69 -107.50 -0.50 20.63 16 24 C -0.66 -2.72 10.01 101.05 1.01 -1.71 16 25 O -0.93 -11.67 18.06 -57.83 -1.04 -12.72 16 26 O -0.93 -11.15 16.07 -57.83 -0.93 -12.08 16 27 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.07 0.17 6.39 -51.93 -0.33 -0.16 16 29 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.41 5.60 6.40 -40.82 -0.26 5.34 16 33 H 0.10 2.05 7.15 -51.93 -0.37 1.68 16 34 H 0.08 1.43 8.05 -51.92 -0.42 1.02 16 35 H 0.09 1.83 8.06 -52.49 -0.42 1.40 16 36 H 0.09 1.79 8.06 -52.48 -0.42 1.37 16 37 H 0.09 1.85 8.06 -52.48 -0.42 1.43 16 38 H 0.10 2.50 4.74 -52.49 -0.25 2.25 16 39 H 0.28 6.94 8.30 -40.82 -0.34 6.60 16 40 H 0.13 0.28 6.77 -51.92 -0.35 -0.07 16 41 H 0.13 0.47 8.14 -51.92 -0.42 0.05 16 42 H 0.13 0.29 8.14 -51.92 -0.42 -0.14 16 LS Contribution 355.10 15.07 5.35 5.35 Total: -1.00 -36.90 355.10 -8.36 -45.26 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: -5.75 Total: 7.50 kcal Atomic # 6 Polarization: -22.94 SS G_CDS: -1.86 Total: -24.80 kcal Atomic # 7 Polarization: -34.02 SS G_CDS: 0.46 Total: -33.56 kcal Atomic # 8 Polarization: -35.58 SS G_CDS: -1.88 Total: -37.46 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -4.17 Total: 17.08 kcal Atomic # 16 Polarization: 21.13 SS G_CDS: -0.50 Total: 20.63 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -36.90 -8.36 -45.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777058820.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.808 kcal (2) G-P(sol) polarization free energy of solvation -36.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds