Wall clock time and date at job start Fri Apr 10 2020 14:49:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.46639 * 2 1 4 4 C 1.52997 * 109.47246 * 240.00006 * 2 1 3 5 5 N 1.46495 * 109.47392 * 180.02562 * 4 2 1 6 6 C 1.34773 * 120.00370 * 180.02562 * 5 4 2 7 7 O 1.21281 * 119.99648 * 359.97438 * 6 5 4 8 8 C 1.50697 * 120.00166 * 179.72270 * 6 5 4 9 9 C 1.50702 * 109.47043 * 180.27057 * 8 6 5 10 10 C 1.37646 * 120.12793 * 264.99588 * 9 8 6 11 11 C 1.38612 * 120.24483 * 179.97438 * 10 9 8 12 12 C 1.38647 * 120.50287 * 0.02822 * 11 10 9 13 13 C 1.37598 * 120.25459 * 0.02562 * 12 11 10 14 14 C 1.40691 * 120.12835 * 84.73100 * 9 8 6 15 15 C 1.41403 * 120.24437 * 359.97438 * 14 9 8 16 16 H 1.07999 * 119.99318 * 329.70451 * 15 14 9 17 17 C 1.39944 * 119.99919 * 149.70897 * 15 14 9 18 18 N 1.30826 * 119.99809 * 162.01743 * 17 15 14 19 19 Si 1.86800 * 120.00004 * 342.01074 * 17 15 14 20 20 H 1.48498 * 109.46635 * 95.40751 * 19 17 15 21 21 H 1.48503 * 109.46903 * 215.40215 * 19 17 15 22 22 H 1.48499 * 109.47177 * 335.40445 * 19 17 15 23 23 S 1.81394 * 109.47214 * 119.99803 * 2 1 3 24 24 C 1.81400 * 101.92307 * 304.99983 * 23 2 1 25 25 O 1.42102 * 108.57929 * 59.48666 * 23 2 1 26 26 O 1.42101 * 108.58066 * 190.51438 * 23 2 1 27 27 H 1.09005 * 109.47135 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47336 * 300.00076 * 1 2 3 29 29 H 1.09004 * 109.47261 * 60.00162 * 1 2 3 30 30 H 1.09004 * 109.47127 * 59.99750 * 4 2 1 31 31 H 1.09005 * 109.46936 * 299.99979 * 4 2 1 32 32 H 0.97005 * 119.99914 * 359.97438 * 5 4 2 33 33 H 1.08998 * 109.47615 * 300.27433 * 8 6 5 34 34 H 1.09008 * 109.47332 * 60.27354 * 8 6 5 35 35 H 1.07998 * 119.87310 * 0.02562 * 10 9 8 36 36 H 1.08005 * 119.74413 * 180.02562 * 11 10 9 37 37 H 1.08004 * 119.87459 * 179.97438 * 12 11 10 38 38 H 1.07994 * 120.13201 * 179.97438 * 13 12 11 39 39 H 0.96995 * 119.99846 * 179.97438 * 18 17 15 40 40 H 1.09007 * 109.47209 * 59.99743 * 24 23 2 41 41 H 1.09000 * 109.47520 * 179.97438 * 24 23 2 42 42 H 1.08999 * 109.47302 * 300.00171 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 3.5049 -0.7218 -1.2489 6 6 4.1789 -1.3050 -2.2599 7 8 3.5724 -1.8298 -3.1697 8 6 5.6858 -1.3001 -2.2627 9 6 6.1881 -2.0053 -3.4962 10 6 6.5208 -3.3398 -3.4419 11 6 6.9825 -3.9910 -4.5750 12 6 7.1154 -3.3079 -5.7743 13 6 6.7898 -1.9733 -5.8516 14 6 6.3136 -1.3035 -4.7091 15 6 5.9690 0.0662 -4.7785 16 1 5.1966 0.4618 -4.1356 17 6 6.6288 0.9089 -5.6801 18 7 6.1006 2.0607 -6.0054 19 14 8.2639 0.3892 -6.4189 20 1 8.0304 -0.2430 -7.7421 21 1 9.1327 1.5819 -6.5866 22 1 8.9284 -0.5841 -5.5154 23 16 2.1347 -0.8550 1.4811 24 6 1.2998 0.0578 2.8079 25 8 1.6408 -2.1874 1.4680 26 8 3.5342 -0.6349 1.5914 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.6766 -0.2074 -2.1392 31 1 1.6766 -1.7489 -1.2492 32 1 3.9900 -0.3017 -0.5214 33 1 6.0459 -0.2713 -2.2604 34 1 6.0526 -1.8154 -1.3749 35 1 6.4208 -3.8817 -2.5130 36 1 7.2409 -5.0384 -4.5233 37 1 7.4765 -3.8252 -6.6509 38 1 6.8944 -1.4431 -6.7866 39 1 6.5581 2.6449 -6.6300 40 1 0.2202 -0.0208 2.6794 41 1 1.5822 -0.3639 3.7725 42 1 1.5949 1.1063 2.7690 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000777058820.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:49:53 Heat of formation + Delta-G solvation = -121.009177 kcal Electronic energy + Delta-G solvation = -25630.587511 eV Core-core repulsion = 21894.428113 eV Total energy + Delta-G solvation = -3736.159398 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.118 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.96296 -39.40574 -38.08423 -37.25459 -36.88253 -35.48523 -34.08588 -33.36285 -32.16241 -30.41128 -29.00268 -27.19180 -26.30757 -23.68928 -23.20806 -22.19932 -21.03426 -19.77190 -19.25124 -18.18030 -18.12933 -17.68203 -17.29090 -16.96196 -16.66220 -16.43256 -16.11653 -15.62750 -15.41682 -15.09657 -14.60515 -14.54618 -14.23434 -14.01224 -13.89511 -13.79027 -13.74122 -13.58719 -13.19539 -13.13399 -13.08283 -13.05053 -12.72370 -12.68142 -12.51570 -12.38128 -11.99497 -11.94649 -11.53588 -11.38460 -11.24017 -10.97484 -10.90947 -10.22738 -9.40459 -9.30143 -8.86292 -6.44672 -1.00924 0.78899 0.89922 1.27772 1.40280 1.50256 1.68291 1.77735 2.14058 2.17131 2.63065 2.65082 3.05399 3.34436 3.52951 3.69793 4.01183 4.04665 4.11931 4.23691 4.26594 4.33131 4.43077 4.45370 4.56206 4.63562 4.68321 4.71974 4.82629 4.92994 4.95782 4.99138 5.16050 5.23589 5.33112 5.37815 5.66740 5.86580 5.94664 6.05196 6.29235 6.42926 6.48386 6.80654 6.90608 7.26855 8.21636 Molecular weight = 325.12amu Principal moments of inertia in cm(-1) A = 0.018440 B = 0.003409 C = 0.003125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.053220 B = 8212.290272 C = 8957.176144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.575 4.575 3 H 0.173 0.827 4 C 0.124 3.876 5 N -0.746 5.746 6 C 0.517 3.483 7 O -0.568 6.568 8 C -0.079 4.079 9 C -0.174 4.174 10 C -0.081 4.081 11 C -0.229 4.229 12 C -0.090 4.090 13 C -0.256 4.256 14 C 0.085 3.915 15 C -0.472 4.472 16 H 0.058 0.942 17 C 0.050 3.950 18 N -0.851 5.851 19 Si 0.963 3.037 20 H -0.267 1.267 21 H -0.276 1.276 22 H -0.252 1.252 23 S 2.402 3.598 24 C -0.631 4.631 25 O -0.980 6.980 26 O -0.976 6.976 27 H 0.073 0.927 28 H 0.116 0.884 29 H 0.086 0.914 30 H 0.079 0.921 31 H 0.070 0.930 32 H 0.416 0.584 33 H 0.100 0.900 34 H 0.116 0.884 35 H 0.123 0.877 36 H 0.129 0.871 37 H 0.124 0.876 38 H 0.093 0.907 39 H 0.291 0.709 40 H 0.160 0.840 41 H 0.142 0.858 42 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.651 0.880 18.136 20.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.684 4.684 3 H 0.190 0.810 4 C -0.001 4.001 5 N -0.405 5.405 6 C 0.305 3.695 7 O -0.446 6.446 8 C -0.118 4.118 9 C -0.176 4.176 10 C -0.099 4.099 11 C -0.248 4.248 12 C -0.108 4.108 13 C -0.275 4.275 14 C 0.082 3.918 15 C -0.501 4.501 16 H 0.076 0.924 17 C -0.164 4.164 18 N -0.477 5.477 19 Si 0.787 3.213 20 H -0.193 1.193 21 H -0.203 1.203 22 H -0.175 1.175 23 S 2.589 3.411 24 C -0.785 4.785 25 O -0.977 6.977 26 O -0.972 6.972 27 H 0.092 0.908 28 H 0.135 0.865 29 H 0.105 0.895 30 H 0.097 0.903 31 H 0.089 0.911 32 H 0.256 0.744 33 H 0.118 0.882 34 H 0.134 0.866 35 H 0.141 0.859 36 H 0.147 0.853 37 H 0.142 0.858 38 H 0.111 0.889 39 H 0.102 0.898 40 H 0.178 0.822 41 H 0.160 0.840 42 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -9.529 0.047 17.426 19.861 hybrid contribution 0.159 0.986 -0.647 1.190 sum -9.369 1.033 16.779 19.245 Atomic orbital electron populations 1.21851 0.86852 1.04999 1.06989 1.30297 1.09327 1.14575 1.14187 0.80960 1.21176 0.79886 1.00983 0.98029 1.46374 1.07349 1.60192 1.26550 1.21174 0.91230 0.76439 0.80614 1.90654 1.71178 1.46001 1.36737 1.20386 0.89958 1.03436 0.98065 1.19524 1.09163 0.95167 0.93737 1.20906 0.97260 0.93240 0.98502 1.20861 1.10621 1.00068 0.93266 1.20985 0.98061 0.93682 0.98056 1.21154 1.12884 0.96050 0.97431 1.17717 0.89534 0.93230 0.91302 1.19340 1.18823 0.93138 1.18830 0.92413 1.26756 1.01815 0.94236 0.93618 1.69730 1.38733 1.11102 1.28169 0.85527 0.78296 0.77949 0.79525 1.19271 1.20308 1.17548 1.08261 0.76060 0.77035 0.79753 1.30098 1.15946 1.16182 1.16228 1.93546 1.82233 1.35308 1.86605 1.93520 1.30681 1.86994 1.86044 0.90759 0.86508 0.89494 0.90306 0.91133 0.74436 0.88228 0.86582 0.85937 0.85341 0.85845 0.88905 0.89830 0.82179 0.83953 0.82097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 8.90 71.98 0.64 -0.64 16 2 C -0.57 -8.27 2.91 30.59 0.09 -8.18 16 3 H 0.17 1.48 8.14 -2.39 -0.02 1.46 16 4 C 0.12 3.34 5.11 86.38 0.44 3.78 16 5 N -0.75 -24.55 5.22 -463.07 -2.42 -26.97 16 6 C 0.52 22.19 7.42 87.66 0.65 22.84 16 7 O -0.57 -29.42 16.03 -3.03 -0.05 -29.47 16 8 C -0.08 -3.28 5.19 29.10 0.15 -3.13 16 9 C -0.17 -8.41 4.43 -19.40 -0.09 -8.50 16 10 C -0.08 -3.52 9.66 22.22 0.21 -3.30 16 11 C -0.23 -9.58 10.05 22.46 0.23 -9.35 16 12 C -0.09 -4.00 10.02 22.22 0.22 -3.77 16 13 C -0.26 -13.11 7.17 22.73 0.16 -12.95 16 14 C 0.08 4.57 5.10 -21.29 -0.11 4.46 16 15 C -0.47 -27.15 8.56 23.46 0.20 -26.95 16 16 H 0.06 3.55 6.99 -2.91 -0.02 3.53 16 17 C 0.05 2.75 5.41 85.26 0.46 3.21 16 18 N -0.85 -47.62 13.93 21.83 0.30 -47.31 16 19 Si 0.96 44.50 24.52 68.60 1.68 46.18 16 20 H -0.27 -11.97 6.71 99.48 0.67 -11.30 16 21 H -0.28 -11.85 7.11 99.48 0.71 -11.15 16 22 H -0.25 -11.84 6.85 99.48 0.68 -11.16 16 23 S 2.40 38.91 4.69 -56.49 -0.27 38.65 16 24 C -0.63 -2.31 10.01 113.37 1.14 -1.17 16 25 O -0.98 -24.67 18.06 -127.37 -2.30 -26.97 16 26 O -0.98 -22.86 16.07 -127.37 -2.05 -24.91 16 27 H 0.07 0.77 8.14 -2.38 -0.02 0.75 16 28 H 0.12 -0.01 6.39 -2.39 -0.02 -0.02 16 29 H 0.09 0.78 8.14 -2.38 -0.02 0.76 16 30 H 0.08 2.30 8.14 -2.38 -0.02 2.28 16 31 H 0.07 2.07 8.14 -2.38 -0.02 2.05 16 32 H 0.42 11.72 6.40 -92.70 -0.59 11.12 16 33 H 0.10 4.16 7.15 -2.39 -0.02 4.15 16 34 H 0.12 3.92 8.05 -2.38 -0.02 3.91 16 35 H 0.12 4.51 8.06 -2.91 -0.02 4.48 16 36 H 0.13 4.42 8.06 -2.91 -0.02 4.39 16 37 H 0.12 4.62 8.06 -2.91 -0.02 4.60 16 38 H 0.09 4.76 4.74 -2.91 -0.01 4.74 16 39 H 0.29 14.70 8.30 -92.71 -0.77 13.93 16 40 H 0.16 -0.24 6.77 -2.39 -0.02 -0.26 16 41 H 0.14 0.40 8.14 -2.39 -0.02 0.38 16 42 H 0.16 -0.24 8.14 -2.39 -0.02 -0.26 16 Total: -1.00 -85.76 355.10 -0.31 -86.07 By element: Atomic # 1 Polarization: 28.00 SS G_CDS: 0.39 Total: 28.39 kcal Atomic # 6 Polarization: -48.06 SS G_CDS: 4.40 Total: -43.66 kcal Atomic # 7 Polarization: -72.17 SS G_CDS: -2.11 Total: -74.28 kcal Atomic # 8 Polarization: -76.95 SS G_CDS: -4.40 Total: -81.35 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 1.68 Total: 46.18 kcal Atomic # 16 Polarization: 38.91 SS G_CDS: -0.27 Total: 38.65 kcal Total: -85.76 -0.31 -86.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777058820.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.942 kcal (2) G-P(sol) polarization free energy of solvation -85.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds