Wall clock time and date at job start Fri Apr 10 2020 14:49:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.47082 * 2 1 4 4 C 1.50702 * 109.46955 * 240.00559 * 2 1 3 5 5 C 1.38218 * 120.01214 * 300.02269 * 4 2 1 6 6 C 1.38225 * 120.02313 * 179.97438 * 5 4 2 7 7 C 1.38270 * 120.05340 * 359.97438 * 6 5 4 8 8 C 1.38175 * 120.02272 * 359.97438 * 7 6 5 9 9 C 1.38436 * 120.01380 * 119.99829 * 4 2 1 10 10 F 1.35106 * 120.02572 * 0.02562 * 9 4 2 11 11 C 1.52999 * 109.47445 * 120.00557 * 2 1 3 12 12 H 1.09006 * 109.46672 * 59.99928 * 11 2 1 13 13 O 1.42897 * 109.47388 * 179.97438 * 11 2 1 14 14 C 1.50697 * 109.47210 * 300.00252 * 11 2 1 15 15 O 1.20828 * 119.99764 * 245.00334 * 14 11 2 16 16 O 1.34228 * 120.00182 * 64.99305 * 14 11 2 17 17 C 1.45202 * 116.99882 * 180.02562 * 16 14 11 18 18 C 1.50705 * 109.47151 * 180.02562 * 17 16 14 19 19 O 1.21289 * 119.99944 * 0.02562 * 18 17 16 20 20 N 1.34770 * 119.99833 * 179.97438 * 18 17 16 21 21 C 1.37107 * 119.99687 * 180.02562 * 20 18 17 22 22 H 1.07994 * 120.00041 * 359.97438 * 21 20 18 23 23 C 1.38952 * 119.99873 * 180.02562 * 21 20 18 24 24 N 1.31415 * 119.99985 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00078 * 179.97438 * 23 21 20 26 26 H 1.48506 * 109.46769 * 59.99785 * 25 23 21 27 27 H 1.48500 * 109.47356 * 180.02562 * 25 23 21 28 28 H 1.48498 * 109.46993 * 300.00214 * 25 23 21 29 29 H 1.08993 * 109.47324 * 59.99227 * 1 2 3 30 30 H 1.08996 * 109.46827 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46572 * 299.99071 * 1 2 3 32 32 H 1.08000 * 119.98639 * 359.97438 * 5 4 2 33 33 H 1.08003 * 119.97189 * 180.02562 * 6 5 4 34 34 H 1.07999 * 119.98207 * 180.27551 * 7 6 5 35 35 H 1.08001 * 120.00487 * 180.02562 * 8 7 6 36 36 H 0.96693 * 113.99727 * 59.99509 * 13 11 2 37 37 H 1.09000 * 109.47256 * 299.99887 * 17 16 14 38 38 H 1.08997 * 109.47122 * 60.00280 * 17 16 14 39 39 H 0.96997 * 120.00652 * 0.02562 * 20 18 17 40 40 H 0.96996 * 119.99886 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2306 5 6 1.6982 -2.0334 -1.4499 6 6 2.1583 -2.6850 -2.5788 7 6 2.9528 -2.0140 -3.4900 8 6 3.2873 -0.6910 -3.2734 9 6 2.8282 -0.0377 -2.1420 10 9 3.1555 1.2556 -1.9286 11 6 2.0401 -0.7214 1.2491 12 1 1.6768 -1.7491 1.2490 13 8 3.4691 -0.7219 1.2488 14 6 1.5378 -0.0111 2.4797 15 8 2.3192 0.5264 3.2283 16 8 0.2223 0.0245 2.7440 17 6 -0.1896 0.7267 3.9463 18 6 -1.6896 0.6614 4.0773 19 8 -2.3466 0.0798 3.2400 20 7 -2.3007 1.2483 5.1253 21 6 -3.6652 1.1884 5.2447 22 1 -4.2503 0.6713 4.4987 23 6 -4.2954 1.7940 6.3249 24 7 -3.5835 2.4246 7.2319 25 14 -6.1545 1.7131 6.4872 26 1 -6.5826 0.2936 6.5717 27 1 -6.5759 2.4318 7.7165 28 1 -6.7830 2.3499 5.3021 29 1 -0.3633 0.5139 -0.8898 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3632 0.5137 0.8901 32 1 1.0773 -2.5583 -0.7390 33 1 1.8964 -3.7188 -2.7495 34 1 3.3081 -2.5229 -4.3739 35 1 3.9076 -0.1671 -3.9856 36 1 3.8627 0.1613 1.2486 37 1 0.2713 0.2590 4.8163 38 1 0.1250 1.7685 3.8845 39 1 -1.7752 1.7132 5.7952 40 1 -4.0233 2.8470 7.9861 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000870073696.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:49:35 Heat of formation + Delta-G solvation = -215.500437 kcal Electronic energy + Delta-G solvation = -27180.282513 eV Core-core repulsion = 22873.812490 eV Total energy + Delta-G solvation = -4306.470023 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.120 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.91059 -42.06911 -40.39568 -39.96182 -38.38915 -37.42534 -36.02839 -35.20597 -33.41157 -31.45689 -31.07189 -29.98213 -28.11655 -26.52643 -25.08306 -23.64662 -22.54678 -21.53235 -21.44222 -20.08141 -19.56962 -18.64688 -18.46725 -17.92860 -17.59401 -17.51765 -16.87014 -16.62135 -16.53038 -16.27523 -15.95512 -15.74793 -15.42936 -15.07624 -14.88910 -14.62542 -14.15906 -14.04390 -13.95590 -13.65487 -13.55816 -13.29999 -13.14065 -12.93670 -12.89626 -12.81545 -12.48499 -12.24454 -12.13521 -11.96154 -11.80334 -11.72098 -11.55395 -11.24850 -10.49549 -10.11569 -9.86141 -9.57669 -8.52167 -6.02707 0.20980 0.29852 0.90403 1.23957 1.37698 1.43776 1.54860 1.87599 2.28655 2.65787 2.91381 3.05121 3.13417 3.27088 3.45416 3.51507 3.64291 3.78269 3.97380 4.02779 4.12607 4.18393 4.20995 4.28243 4.32687 4.44890 4.53274 4.82500 4.94943 5.00524 5.13781 5.17002 5.24020 5.36993 5.41119 5.44763 5.53151 5.88701 5.99242 6.24031 6.44807 6.54742 7.02863 7.40258 7.93031 8.64655 Molecular weight = 325.12amu Principal moments of inertia in cm(-1) A = 0.023691 B = 0.002481 C = 0.002372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.607134 B =11283.834239 C =11799.145674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.069 4.069 3 H 0.084 0.916 4 C -0.109 4.109 5 C -0.093 4.093 6 C -0.124 4.124 7 C -0.092 4.092 8 C -0.158 4.158 9 C 0.078 3.922 10 F -0.152 7.152 11 C 0.141 3.859 12 H 0.157 0.843 13 O -0.530 6.530 14 C 0.432 3.568 15 O -0.525 6.525 16 O -0.325 6.325 17 C 0.064 3.936 18 C 0.439 3.561 19 O -0.610 6.610 20 N -0.560 5.560 21 C -0.336 4.336 22 H 0.086 0.914 23 C -0.010 4.010 24 N -0.917 5.917 25 Si 0.997 3.003 26 H -0.269 1.269 27 H -0.271 1.271 28 H -0.270 1.270 29 H 0.065 0.935 30 H 0.074 0.926 31 H 0.063 0.937 32 H 0.144 0.856 33 H 0.156 0.844 34 H 0.161 0.839 35 H 0.148 0.852 36 H 0.392 0.608 37 H 0.104 0.896 38 H 0.104 0.896 39 H 0.399 0.601 40 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.300 -7.538 -18.680 24.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.088 4.088 3 H 0.102 0.898 4 C -0.109 4.109 5 C -0.111 4.111 6 C -0.142 4.142 7 C -0.109 4.109 8 C -0.176 4.176 9 C 0.059 3.941 10 F -0.130 7.130 11 C 0.080 3.920 12 H 0.174 0.826 13 O -0.337 6.337 14 C 0.275 3.725 15 O -0.414 6.414 16 O -0.240 6.240 17 C -0.013 4.013 18 C 0.226 3.774 19 O -0.497 6.497 20 N -0.198 5.198 21 C -0.465 4.465 22 H 0.104 0.896 23 C -0.211 4.211 24 N -0.557 5.557 25 Si 0.820 3.180 26 H -0.194 1.194 27 H -0.196 1.196 28 H -0.195 1.195 29 H 0.084 0.916 30 H 0.093 0.907 31 H 0.081 0.919 32 H 0.162 0.838 33 H 0.173 0.827 34 H 0.178 0.822 35 H 0.166 0.834 36 H 0.243 0.757 37 H 0.122 0.878 38 H 0.122 0.878 39 H 0.233 0.767 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 13.957 -8.221 -18.795 24.812 hybrid contribution -0.363 1.593 1.077 1.957 sum 13.594 -6.628 -17.718 23.295 Atomic orbital electron populations 1.21935 0.91691 1.04039 1.02858 1.20568 0.97977 0.99413 0.90846 0.89814 1.19542 0.99845 0.95823 0.95732 1.21180 0.98863 0.92502 0.98556 1.21569 0.97388 1.01628 0.93625 1.21407 0.96463 0.92954 1.00122 1.21394 1.02718 0.96725 0.96811 1.17831 1.00098 0.78862 0.97319 1.91450 1.91240 1.35352 1.94990 1.21714 0.82219 1.01625 0.86451 0.82625 1.86628 1.15847 1.35354 1.95847 1.25433 0.80448 0.78040 0.88569 1.90664 1.57121 1.43908 1.49741 1.86662 1.25775 1.69093 1.42459 1.22570 0.92720 0.98901 0.87087 1.20007 0.89132 0.84342 0.83933 1.90527 1.67260 1.48251 1.43625 1.41754 1.07631 1.48253 1.22123 1.19687 0.82509 1.34875 1.09459 0.89575 1.26128 1.05213 0.95216 0.94501 1.69670 1.38411 1.34908 1.12703 0.84925 0.76261 0.78790 0.78014 1.19407 1.19560 1.19463 0.91615 0.90703 0.91851 0.83803 0.82665 0.82177 0.83378 0.75715 0.87831 0.87797 0.76701 0.91022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.59 8.48 71.98 0.61 -2.98 16 2 C -0.07 -1.48 2.31 -11.54 -0.03 -1.51 16 3 H 0.08 1.90 7.13 -2.39 -0.02 1.88 16 4 C -0.11 -2.09 4.43 -19.82 -0.09 -2.18 16 5 C -0.09 -1.46 8.71 22.26 0.19 -1.26 16 6 C -0.12 -1.48 10.04 22.27 0.22 -1.25 16 7 C -0.09 -1.03 10.04 22.26 0.22 -0.80 16 8 C -0.16 -2.35 10.03 22.31 0.22 -2.13 16 9 C 0.08 1.54 7.25 22.37 0.16 1.70 16 10 F -0.15 -3.42 16.20 44.97 0.73 -2.69 16 11 C 0.14 3.17 2.91 29.85 0.09 3.26 16 12 H 0.16 2.98 7.39 -2.38 -0.02 2.97 16 13 O -0.53 -11.82 12.62 -129.96 -1.64 -13.46 16 14 C 0.43 12.79 7.13 71.23 0.51 13.29 16 15 O -0.53 -17.63 16.07 28.38 0.46 -17.17 16 16 O -0.33 -11.13 6.98 -45.04 -0.31 -11.45 16 17 C 0.06 2.35 5.94 71.24 0.42 2.78 16 18 C 0.44 20.77 7.86 87.66 0.69 21.46 16 19 O -0.61 -33.10 16.08 15.74 0.25 -32.84 16 20 N -0.56 -28.27 5.29 -306.99 -1.62 -29.89 16 21 C -0.34 -18.59 9.68 84.04 0.81 -17.77 16 22 H 0.09 5.01 7.16 -2.91 -0.02 4.99 16 23 C -0.01 -0.52 5.50 84.93 0.47 -0.05 16 24 N -0.92 -48.53 13.05 21.66 0.28 -48.25 16 25 Si 1.00 41.65 29.55 68.60 2.03 43.68 16 26 H -0.27 -11.05 7.11 99.48 0.71 -10.35 16 27 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 28 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 29 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.07 1.66 7.39 -2.39 -0.02 1.65 16 31 H 0.06 1.93 5.54 -2.39 -0.01 1.92 16 32 H 0.14 1.88 7.10 -2.91 -0.02 1.86 16 33 H 0.16 1.02 8.06 -2.91 -0.02 1.00 16 34 H 0.16 0.81 8.06 -2.91 -0.02 0.79 16 35 H 0.15 1.66 8.06 -2.91 -0.02 1.63 16 36 H 0.39 7.33 8.79 -74.06 -0.65 6.68 16 37 H 0.10 3.45 8.13 -2.39 -0.02 3.43 16 38 H 0.10 3.44 8.13 -2.39 -0.02 3.42 16 39 H 0.40 19.12 7.90 -92.71 -0.73 18.39 16 40 H 0.28 13.90 8.31 -92.71 -0.77 13.13 16 Total: -1.00 -69.46 352.77 4.41 -65.04 By element: Atomic # 1 Polarization: 34.75 SS G_CDS: -0.27 Total: 34.48 kcal Atomic # 6 Polarization: 8.04 SS G_CDS: 4.51 Total: 12.56 kcal Atomic # 7 Polarization: -76.80 SS G_CDS: -1.34 Total: -78.14 kcal Atomic # 8 Polarization: -73.68 SS G_CDS: -1.24 Total: -74.92 kcal Atomic # 9 Polarization: -3.42 SS G_CDS: 0.73 Total: -2.69 kcal Atomic # 14 Polarization: 41.65 SS G_CDS: 2.03 Total: 43.68 kcal Total: -69.46 4.41 -65.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870073696.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -150.456 kcal (2) G-P(sol) polarization free energy of solvation -69.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -219.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -215.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds