Wall clock time and date at job start Fri Apr 10 2020 14:49:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.47056 * 2 1 4 4 C 1.50699 * 109.47172 * 239.99821 * 2 1 3 5 5 C 1.38216 * 120.01501 * 300.02415 * 4 2 1 6 6 C 1.38226 * 120.02514 * 179.97438 * 5 4 2 7 7 C 1.38265 * 120.05338 * 0.02562 * 6 5 4 8 8 C 1.38176 * 120.02279 * 359.74109 * 7 6 5 9 9 C 1.38436 * 120.00926 * 119.99778 * 4 2 1 10 10 F 1.35104 * 120.02854 * 0.02562 * 9 4 2 11 11 C 1.53002 * 109.46986 * 119.99677 * 2 1 3 12 12 H 1.09003 * 109.46879 * 179.97438 * 11 2 1 13 13 O 1.42898 * 109.46980 * 60.00697 * 11 2 1 14 14 C 1.50694 * 109.47447 * 300.00382 * 11 2 1 15 15 O 1.20823 * 120.00213 * 115.00338 * 14 11 2 16 16 O 1.34228 * 119.99693 * 294.99587 * 14 11 2 17 17 C 1.45208 * 116.99902 * 179.97438 * 16 14 11 18 18 C 1.50703 * 109.46864 * 180.02562 * 17 16 14 19 19 O 1.21294 * 120.00204 * 359.97438 * 18 17 16 20 20 N 1.34779 * 119.99454 * 180.02562 * 18 17 16 21 21 C 1.37103 * 119.99598 * 180.02562 * 20 18 17 22 22 H 1.08001 * 119.99826 * 359.97438 * 21 20 18 23 23 C 1.38945 * 119.99663 * 179.97438 * 21 20 18 24 24 N 1.31411 * 120.00152 * 359.97438 * 23 21 20 25 25 Si 1.86805 * 119.99893 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.46780 * 359.97438 * 25 23 21 27 27 H 1.48496 * 109.46980 * 119.99953 * 25 23 21 28 28 H 1.48497 * 109.46977 * 240.00010 * 25 23 21 29 29 H 1.09001 * 109.47308 * 59.99930 * 1 2 3 30 30 H 1.09003 * 109.47056 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47235 * 299.99681 * 1 2 3 32 32 H 1.08001 * 119.98628 * 359.97438 * 5 4 2 33 33 H 1.08001 * 119.97063 * 179.97438 * 6 5 4 34 34 H 1.07993 * 119.98889 * 180.02562 * 7 6 5 35 35 H 1.07999 * 120.01677 * 180.27805 * 8 7 6 36 36 H 0.96705 * 113.99787 * 299.99000 * 13 11 2 37 37 H 1.08999 * 109.46955 * 300.00165 * 17 16 14 38 38 H 1.09001 * 109.46889 * 60.00126 * 17 16 14 39 39 H 0.96993 * 120.00167 * 359.97438 * 20 18 17 40 40 H 0.97003 * 119.99844 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 6 1.6982 -2.0336 -1.4497 6 6 2.1584 -2.6852 -2.5785 7 6 2.9538 -2.0147 -3.4892 8 6 3.2851 -0.6906 -3.2745 9 6 2.8282 -0.0379 -2.1418 10 9 3.1554 1.2555 -1.9286 11 6 2.0399 -0.7212 1.2493 12 1 3.1300 -0.7216 1.2491 13 8 1.5637 -2.0685 1.2493 14 6 1.5376 -0.0109 2.4797 15 8 0.7704 -0.5684 3.2283 16 8 1.9425 1.2413 2.7441 17 6 1.4176 1.8639 3.9463 18 6 1.9783 3.2567 4.0765 19 8 2.7453 3.6825 3.2388 20 7 1.6283 4.0287 5.1244 21 6 2.1380 5.2959 5.2426 22 1 2.8203 5.6753 4.4963 23 6 1.7768 6.0920 6.3226 24 7 0.9463 5.6305 7.2303 25 14 2.4718 7.8184 6.4841 26 1 3.3774 8.0963 5.3405 27 1 1.3591 8.8018 6.4854 28 1 3.2318 7.9291 7.7550 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.0773 -2.5584 -0.7387 33 1 1.8971 -3.7193 -2.7487 34 1 3.3124 -2.5248 -4.3710 35 1 3.9027 -0.1656 -3.9883 36 1 0.5997 -2.1449 1.2493 37 1 0.3306 1.9146 3.8842 38 1 1.7048 1.2734 4.8163 39 1 1.0153 3.6880 5.7944 40 1 0.6938 6.1864 7.9841 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000870073697.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:49:40 Heat of formation + Delta-G solvation = -215.537139 kcal Electronic energy + Delta-G solvation = -27155.275067 eV Core-core repulsion = 22848.803452 eV Total energy + Delta-G solvation = -4306.471615 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.120 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.90362 -42.09621 -40.51382 -39.97701 -38.48736 -37.36290 -36.06775 -34.86640 -33.44789 -31.49915 -30.96098 -30.14637 -28.55257 -26.56760 -24.99036 -23.60127 -22.54829 -21.53789 -21.38045 -20.11043 -19.42822 -18.62685 -18.35053 -18.07898 -17.59918 -17.50733 -16.99164 -16.61981 -16.51647 -16.28041 -16.22465 -15.74859 -15.59996 -15.06002 -14.89882 -14.65344 -14.14685 -14.00316 -13.81924 -13.68205 -13.59014 -13.35065 -13.03990 -12.96963 -12.94238 -12.80962 -12.49229 -12.26433 -12.12830 -12.02652 -11.92859 -11.86283 -11.61066 -11.09041 -10.54403 -10.14344 -9.85538 -9.57931 -8.54933 -6.05578 0.19683 0.32531 0.90617 1.24770 1.32663 1.42481 1.57015 1.83698 2.27197 2.67767 2.88582 3.02640 3.10433 3.30946 3.45360 3.49031 3.66179 3.76682 3.95796 3.99355 4.10459 4.14875 4.18284 4.26546 4.38720 4.46805 4.49818 4.65923 4.87277 5.01502 5.08965 5.17240 5.19351 5.28451 5.35021 5.46773 5.54703 5.86263 6.00933 6.26879 6.43344 6.54504 7.00543 7.36774 7.90501 8.62319 Molecular weight = 325.12amu Principal moments of inertia in cm(-1) A = 0.021551 B = 0.002584 C = 0.002366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.956394 B =10831.410292 C =11829.080789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.077 4.077 3 H 0.083 0.917 4 C -0.121 4.121 5 C -0.074 4.074 6 C -0.129 4.129 7 C -0.089 4.089 8 C -0.164 4.164 9 C 0.072 3.928 10 F -0.156 7.156 11 C 0.145 3.855 12 H 0.143 0.857 13 O -0.520 6.520 14 C 0.435 3.565 15 O -0.518 6.518 16 O -0.341 6.341 17 C 0.070 3.930 18 C 0.435 3.565 19 O -0.617 6.617 20 N -0.557 5.557 21 C -0.337 4.337 22 H 0.083 0.917 23 C -0.009 4.009 24 N -0.915 5.915 25 Si 0.998 3.002 26 H -0.272 1.272 27 H -0.268 1.268 28 H -0.269 1.269 29 H 0.074 0.926 30 H 0.090 0.910 31 H 0.047 0.953 32 H 0.156 0.844 33 H 0.158 0.842 34 H 0.160 0.840 35 H 0.144 0.856 36 H 0.394 0.606 37 H 0.109 0.891 38 H 0.107 0.893 39 H 0.400 0.600 40 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.754 -19.019 -18.374 26.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.096 4.096 3 H 0.102 0.898 4 C -0.121 4.121 5 C -0.092 4.092 6 C -0.147 4.147 7 C -0.106 4.106 8 C -0.183 4.183 9 C 0.053 3.947 10 F -0.134 7.134 11 C 0.083 3.917 12 H 0.160 0.840 13 O -0.328 6.328 14 C 0.278 3.722 15 O -0.407 6.407 16 O -0.256 6.256 17 C -0.008 4.008 18 C 0.222 3.778 19 O -0.504 6.504 20 N -0.195 5.195 21 C -0.466 4.466 22 H 0.101 0.899 23 C -0.209 4.209 24 N -0.555 5.555 25 Si 0.821 3.179 26 H -0.197 1.197 27 H -0.193 1.193 28 H -0.194 1.194 29 H 0.093 0.907 30 H 0.109 0.891 31 H 0.066 0.934 32 H 0.173 0.827 33 H 0.176 0.824 34 H 0.178 0.822 35 H 0.162 0.838 36 H 0.246 0.754 37 H 0.126 0.874 38 H 0.124 0.876 39 H 0.235 0.765 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.936 -18.878 -18.489 26.441 hybrid contribution -0.525 1.496 1.004 1.876 sum -1.461 -17.382 -17.485 24.699 Atomic orbital electron populations 1.21925 0.91893 1.04079 1.02790 1.20578 0.98332 0.99755 0.90950 0.89820 1.19603 1.00678 0.96146 0.95721 1.21364 0.98514 0.91794 0.97494 1.21627 0.97658 1.01689 0.93714 1.21417 0.96326 0.92659 1.00230 1.21383 1.03103 0.96948 0.96850 1.18045 1.00312 0.78844 0.97543 1.91481 1.91256 1.35714 1.94993 1.21428 1.01415 0.82277 0.86559 0.83954 1.86673 1.29274 1.21381 1.95496 1.25343 0.78493 0.79798 0.88603 1.90656 1.34030 1.66482 1.49497 1.86581 1.66363 1.29294 1.43356 1.22559 0.99956 0.91461 0.86776 1.20110 0.86050 0.87695 0.83939 1.90541 1.40442 1.75551 1.43871 1.41745 1.42164 1.13581 1.22000 1.19743 1.26930 0.90474 1.09480 0.89882 1.26125 0.96456 1.03957 0.94397 1.69674 1.33581 1.39550 1.12675 0.84805 0.78244 0.76467 0.78423 1.19652 1.19342 1.19379 0.90719 0.89125 0.93358 0.82677 0.82439 0.82239 0.83817 0.75402 0.87358 0.87553 0.76539 0.90920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.71 8.45 71.98 0.61 -2.10 16 2 C -0.08 -1.68 2.50 -11.54 -0.03 -1.71 16 3 H 0.08 2.31 7.13 -2.39 -0.02 2.30 16 4 C -0.12 -2.35 4.79 -19.82 -0.09 -2.45 16 5 C -0.07 -1.04 8.30 22.26 0.18 -0.86 16 6 C -0.13 -1.40 10.04 22.27 0.22 -1.18 16 7 C -0.09 -1.01 10.04 22.26 0.22 -0.79 16 8 C -0.16 -2.71 10.03 22.31 0.22 -2.49 16 9 C 0.07 1.59 7.25 22.38 0.16 1.75 16 10 F -0.16 -4.36 16.19 44.97 0.73 -3.63 16 11 C 0.14 3.26 3.28 29.85 0.10 3.36 16 12 H 0.14 3.17 8.14 -2.39 -0.02 3.15 16 13 O -0.52 -9.39 10.28 -129.95 -1.34 -10.72 16 14 C 0.43 12.93 6.01 71.23 0.43 13.36 16 15 O -0.52 -16.49 16.07 28.39 0.46 -16.03 16 16 O -0.34 -12.55 9.75 -45.04 -0.44 -12.99 16 17 C 0.07 2.63 5.94 71.24 0.42 3.05 16 18 C 0.44 21.49 7.86 87.66 0.69 22.18 16 19 O -0.62 -35.67 16.08 15.72 0.25 -35.41 16 20 N -0.56 -28.80 5.29 -306.98 -1.62 -30.42 16 21 C -0.34 -19.08 9.68 84.04 0.81 -18.27 16 22 H 0.08 5.01 7.16 -2.91 -0.02 4.99 16 23 C -0.01 -0.45 5.50 84.93 0.47 0.01 16 24 N -0.91 -48.67 13.05 21.66 0.28 -48.39 16 25 Si 1.00 42.32 29.55 68.60 2.03 44.35 16 26 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 27 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 28 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 29 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.09 1.08 6.03 -2.39 -0.01 1.07 16 31 H 0.05 1.03 7.22 -2.39 -0.02 1.02 16 32 H 0.16 1.62 5.51 -2.91 -0.02 1.60 16 33 H 0.16 0.79 8.06 -2.91 -0.02 0.77 16 34 H 0.16 0.84 8.06 -2.91 -0.02 0.81 16 35 H 0.14 1.96 8.06 -2.91 -0.02 1.94 16 36 H 0.39 5.03 6.75 -74.05 -0.50 4.53 16 37 H 0.11 3.61 8.13 -2.39 -0.02 3.59 16 38 H 0.11 3.61 8.13 -2.39 -0.02 3.59 16 39 H 0.40 19.40 7.90 -92.71 -0.73 18.67 16 40 H 0.28 13.89 8.31 -92.71 -0.77 13.12 16 Total: -1.00 -72.89 349.98 4.66 -68.23 By element: Atomic # 1 Polarization: 31.26 SS G_CDS: -0.12 Total: 31.14 kcal Atomic # 6 Polarization: 9.45 SS G_CDS: 4.42 Total: 13.87 kcal Atomic # 7 Polarization: -77.47 SS G_CDS: -1.34 Total: -78.81 kcal Atomic # 8 Polarization: -74.09 SS G_CDS: -1.07 Total: -75.16 kcal Atomic # 9 Polarization: -4.36 SS G_CDS: 0.73 Total: -3.63 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.35 kcal Total: -72.89 4.66 -68.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870073697.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -147.304 kcal (2) G-P(sol) polarization free energy of solvation -72.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -220.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -215.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds