Wall clock time and date at job start Fri Apr 10 2020 14:49:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 109.47409 * 2 1 4 4 C 1.50702 * 109.46987 * 119.99173 * 2 1 3 5 5 C 1.38225 * 120.00687 * 60.00289 * 4 2 1 6 6 C 1.38220 * 120.02081 * 180.02562 * 5 4 2 7 7 C 1.38270 * 120.05642 * 0.02562 * 6 5 4 8 8 C 1.38178 * 120.02255 * 359.97438 * 7 6 5 9 9 C 1.38433 * 120.01780 * 240.02307 * 4 2 1 10 10 F 1.35106 * 120.02319 * 0.02562 * 9 4 2 11 11 C 1.52992 * 109.47576 * 239.99655 * 2 1 3 12 12 H 1.09003 * 109.47654 * 185.00120 * 11 2 1 13 13 O 1.42900 * 109.47055 * 305.00207 * 11 2 1 14 14 C 1.50702 * 109.47170 * 64.99699 * 11 2 1 15 15 O 1.20825 * 120.00265 * 245.00325 * 14 11 2 16 16 O 1.34228 * 119.99478 * 65.00397 * 14 11 2 17 17 C 1.45210 * 116.99930 * 179.97438 * 16 14 11 18 18 C 1.50701 * 109.47165 * 180.02562 * 17 16 14 19 19 O 1.21292 * 119.99754 * 359.97438 * 18 17 16 20 20 N 1.34770 * 119.99618 * 180.02562 * 18 17 16 21 21 C 1.37106 * 119.99898 * 179.97438 * 20 18 17 22 22 H 1.08001 * 119.99355 * 359.97438 * 21 20 18 23 23 C 1.38947 * 119.99973 * 179.97438 * 21 20 18 24 24 N 1.31407 * 120.00235 * 0.02562 * 23 21 20 25 25 Si 1.86805 * 119.99727 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47377 * 59.99970 * 25 23 21 27 27 H 1.48495 * 109.47005 * 180.02562 * 25 23 21 28 28 H 1.48503 * 109.46745 * 300.00050 * 25 23 21 29 29 H 1.08994 * 109.47458 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47276 * 300.01006 * 1 2 3 31 31 H 1.09006 * 109.47092 * 60.00555 * 1 2 3 32 32 H 1.07994 * 119.98973 * 359.74709 * 5 4 2 33 33 H 1.08003 * 119.97247 * 180.02562 * 6 5 4 34 34 H 1.08000 * 119.99131 * 179.97438 * 7 6 5 35 35 H 1.07996 * 120.01148 * 180.02562 * 8 7 6 36 36 H 0.96701 * 114.00046 * 59.99532 * 13 11 2 37 37 H 1.09003 * 109.46419 * 299.99896 * 17 16 14 38 38 H 1.08995 * 109.46893 * 59.99540 * 17 16 14 39 39 H 0.97000 * 120.00371 * 359.97438 * 20 18 17 40 40 H 0.97002 * 119.99915 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7102 1.2306 5 6 1.6984 -2.0336 1.4496 6 6 2.1586 -2.6851 2.5785 7 6 2.9526 -2.0141 3.4901 8 6 3.2876 -0.6912 3.2732 9 6 2.8277 -0.0376 2.1422 10 9 3.1538 1.2562 1.9296 11 6 2.0400 -0.7213 -1.2491 12 1 3.1264 -0.7995 -1.2054 13 8 1.4703 -2.0304 -1.3093 14 6 1.6414 0.0569 -2.4765 15 8 0.8689 -0.4233 -3.2719 16 8 2.1444 1.2836 -2.6861 17 6 1.7168 1.9747 -3.8895 18 6 2.3802 3.3262 -3.9552 19 8 3.1383 3.6731 -3.0743 20 7 2.1301 4.1498 -4.9923 21 6 2.7332 5.3797 -5.0518 22 1 3.4083 5.6885 -4.2674 23 6 2.4759 6.2286 -6.1213 24 7 1.6541 5.8529 -7.0754 25 14 3.2982 7.9039 -6.2028 26 1 4.7728 7.7309 -6.2289 27 1 2.8604 8.6109 -7.4331 28 1 2.9145 8.7020 -5.0107 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5140 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.0742 -2.5573 0.7408 33 1 1.8976 -3.7192 2.7486 34 1 3.3112 -2.5241 4.3719 35 1 3.9082 -0.1674 3.9851 36 1 0.5041 -2.0373 -1.3502 37 1 1.9989 1.3889 -4.7644 38 1 0.6344 2.1012 -3.8706 39 1 1.5235 3.8725 -5.6966 40 1 1.4747 6.4454 -7.8222 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000870073698.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:49:44 Heat of formation + Delta-G solvation = -216.133404 kcal Electronic energy + Delta-G solvation = -27158.866452 eV Core-core repulsion = 22852.368981 eV Total energy + Delta-G solvation = -4306.497470 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.120 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.90417 -42.08792 -40.50722 -39.97901 -38.50570 -37.37042 -36.06694 -34.85410 -33.44918 -31.49010 -30.94296 -30.15765 -28.58798 -26.56291 -24.96602 -23.60865 -22.54746 -21.53242 -21.37594 -20.11015 -19.44183 -18.62367 -18.33830 -18.06886 -17.60117 -17.51376 -16.98382 -16.62330 -16.53136 -16.28506 -16.22555 -15.75673 -15.59821 -15.07817 -14.90522 -14.65303 -14.14485 -14.00246 -13.82108 -13.62807 -13.57162 -13.35287 -13.03910 -12.96467 -12.93669 -12.81366 -12.51341 -12.26803 -12.14418 -12.03732 -11.93501 -11.85985 -11.59794 -11.10996 -10.54479 -10.14613 -9.85903 -9.58323 -8.54598 -6.05486 0.19349 0.31989 0.89949 1.24349 1.35708 1.42246 1.53618 1.84176 2.27175 2.67388 2.88470 3.02939 3.10672 3.31274 3.44558 3.49049 3.67384 3.75702 3.95727 3.99176 4.10208 4.14820 4.18179 4.27213 4.38470 4.46608 4.49880 4.66353 4.87722 5.01717 5.09787 5.17201 5.18888 5.28387 5.34518 5.46691 5.54358 5.85994 6.00730 6.26852 6.43398 6.54316 7.00273 7.36682 7.90480 8.62167 Molecular weight = 325.12amu Principal moments of inertia in cm(-1) A = 0.020734 B = 0.002620 C = 0.002387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.121204 B =10682.597554 C =11727.199093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.078 4.078 3 H 0.082 0.918 4 C -0.121 4.121 5 C -0.075 4.075 6 C -0.129 4.129 7 C -0.088 4.088 8 C -0.164 4.164 9 C 0.071 3.929 10 F -0.156 7.156 11 C 0.145 3.855 12 H 0.143 0.857 13 O -0.520 6.520 14 C 0.434 3.566 15 O -0.518 6.518 16 O -0.341 6.341 17 C 0.070 3.930 18 C 0.435 3.565 19 O -0.618 6.618 20 N -0.557 5.557 21 C -0.340 4.340 22 H 0.084 0.916 23 C -0.008 4.008 24 N -0.915 5.915 25 Si 0.998 3.002 26 H -0.270 1.270 27 H -0.268 1.268 28 H -0.270 1.270 29 H 0.092 0.908 30 H 0.074 0.926 31 H 0.050 0.950 32 H 0.156 0.844 33 H 0.158 0.842 34 H 0.160 0.840 35 H 0.144 0.856 36 H 0.394 0.606 37 H 0.106 0.894 38 H 0.109 0.891 39 H 0.400 0.600 40 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.389 -19.231 17.831 26.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.097 4.097 3 H 0.100 0.900 4 C -0.122 4.122 5 C -0.093 4.093 6 C -0.146 4.146 7 C -0.106 4.106 8 C -0.183 4.183 9 C 0.052 3.948 10 F -0.135 7.135 11 C 0.084 3.916 12 H 0.160 0.840 13 O -0.329 6.329 14 C 0.277 3.723 15 O -0.407 6.407 16 O -0.256 6.256 17 C -0.008 4.008 18 C 0.222 3.778 19 O -0.504 6.504 20 N -0.194 5.194 21 C -0.469 4.469 22 H 0.102 0.898 23 C -0.209 4.209 24 N -0.554 5.554 25 Si 0.820 3.180 26 H -0.195 1.195 27 H -0.192 1.192 28 H -0.195 1.195 29 H 0.110 0.890 30 H 0.093 0.907 31 H 0.069 0.931 32 H 0.174 0.826 33 H 0.176 0.824 34 H 0.178 0.822 35 H 0.162 0.838 36 H 0.246 0.754 37 H 0.124 0.876 38 H 0.126 0.874 39 H 0.235 0.765 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -2.581 -19.150 17.974 26.390 hybrid contribution -0.410 1.577 -0.989 1.906 sum -2.991 -17.573 16.985 24.622 Atomic orbital electron populations 1.21921 0.91719 1.04189 1.02889 1.20587 0.98492 0.99661 0.90927 0.89965 1.19622 1.00691 0.96141 0.95747 1.21353 0.98497 0.91800 0.97618 1.21629 0.97654 1.01683 0.93671 1.21422 0.96317 0.92644 1.00227 1.21386 1.03032 0.96983 0.96879 1.18058 1.00311 0.78835 0.97581 1.91485 1.91290 1.35700 1.95000 1.21428 1.01184 0.82487 0.86513 0.83970 1.86653 1.27847 1.22965 1.95408 1.25376 0.77911 0.79954 0.89091 1.90655 1.33969 1.69221 1.46815 1.86581 1.65947 1.29878 1.43199 1.22560 1.00533 0.90963 0.86701 1.20101 0.86420 0.87165 0.84152 1.90539 1.41527 1.77453 1.40907 1.41733 1.41696 1.14984 1.21011 1.19682 1.25929 0.92708 1.08539 0.89847 1.26124 0.97042 1.03440 0.94263 1.69661 1.35216 1.39397 1.11163 0.84926 0.78451 0.76481 0.78123 1.19501 1.19242 1.19501 0.88968 0.90744 0.93140 0.82648 0.82402 0.82207 0.83839 0.75369 0.87559 0.87355 0.76537 0.90895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.65 8.40 71.98 0.60 -2.04 16 2 C -0.08 -1.69 2.44 -11.54 -0.03 -1.72 16 3 H 0.08 2.30 7.10 -2.38 -0.02 2.28 16 4 C -0.12 -2.39 4.79 -19.82 -0.09 -2.48 16 5 C -0.08 -1.06 8.43 22.26 0.19 -0.88 16 6 C -0.13 -1.41 10.04 22.27 0.22 -1.18 16 7 C -0.09 -1.02 10.04 22.26 0.22 -0.80 16 8 C -0.16 -2.76 10.03 22.31 0.22 -2.54 16 9 C 0.07 1.60 7.25 22.37 0.16 1.76 16 10 F -0.16 -4.47 16.19 44.97 0.73 -3.74 16 11 C 0.15 3.29 3.21 29.85 0.10 3.38 16 12 H 0.14 3.18 8.14 -2.39 -0.02 3.16 16 13 O -0.52 -9.41 10.34 -129.95 -1.34 -10.75 16 14 C 0.43 12.99 6.25 71.24 0.45 13.43 16 15 O -0.52 -16.58 16.07 28.39 0.46 -16.13 16 16 O -0.34 -12.64 9.72 -45.05 -0.44 -13.07 16 17 C 0.07 2.64 5.94 71.24 0.42 3.06 16 18 C 0.43 21.54 7.86 87.66 0.69 22.22 16 19 O -0.62 -35.76 16.08 15.73 0.25 -35.50 16 20 N -0.56 -28.83 5.29 -306.99 -1.62 -30.46 16 21 C -0.34 -19.24 9.68 84.04 0.81 -18.43 16 22 H 0.08 5.01 7.16 -2.91 -0.02 4.99 16 23 C -0.01 -0.41 5.50 84.93 0.47 0.05 16 24 N -0.91 -48.73 13.05 21.66 0.28 -48.45 16 25 Si 1.00 42.33 29.55 68.60 2.03 44.35 16 26 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 27 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16 28 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 29 H 0.09 1.06 5.96 -2.39 -0.01 1.04 16 30 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.05 1.03 7.38 -2.38 -0.02 1.02 16 32 H 0.16 1.66 5.74 -2.91 -0.02 1.65 16 33 H 0.16 0.80 8.06 -2.91 -0.02 0.78 16 34 H 0.16 0.86 8.06 -2.91 -0.02 0.83 16 35 H 0.14 2.01 8.06 -2.91 -0.02 1.99 16 36 H 0.39 5.11 6.88 -74.06 -0.51 4.60 16 37 H 0.11 3.63 8.13 -2.39 -0.02 3.61 16 38 H 0.11 3.63 8.13 -2.39 -0.02 3.61 16 39 H 0.40 19.45 7.90 -92.71 -0.73 18.72 16 40 H 0.28 13.99 8.31 -92.71 -0.77 13.22 16 Total: -1.00 -72.96 350.63 4.65 -68.30 By element: Atomic # 1 Polarization: 31.71 SS G_CDS: -0.13 Total: 31.59 kcal Atomic # 6 Polarization: 9.42 SS G_CDS: 4.44 Total: 13.85 kcal Atomic # 7 Polarization: -77.56 SS G_CDS: -1.34 Total: -78.90 kcal Atomic # 8 Polarization: -74.38 SS G_CDS: -1.07 Total: -75.45 kcal Atomic # 9 Polarization: -4.47 SS G_CDS: 0.73 Total: -3.74 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.35 kcal Total: -72.96 4.65 -68.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870073698.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -147.830 kcal (2) G-P(sol) polarization free energy of solvation -72.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -220.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -216.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds