Wall clock time and date at job start Fri Apr 10 2020 14:49:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.46822 * 2 1 4 4 C 1.50701 * 109.47799 * 120.00156 * 2 1 3 5 5 C 1.38224 * 120.01055 * 59.99645 * 4 2 1 6 6 C 1.38219 * 120.02221 * 179.97438 * 5 4 2 7 7 C 1.38265 * 120.05383 * 0.02807 * 6 5 4 8 8 C 1.38170 * 120.02442 * 359.97438 * 7 6 5 9 9 C 1.38432 * 120.01322 * 239.72360 * 4 2 1 10 10 F 1.35099 * 120.02854 * 0.02562 * 9 4 2 11 11 C 1.53001 * 109.46901 * 240.00268 * 2 1 3 12 12 H 1.08999 * 109.47164 * 299.99522 * 11 2 1 13 13 O 1.42903 * 109.47171 * 179.97438 * 11 2 1 14 14 C 1.50707 * 109.47316 * 59.99941 * 11 2 1 15 15 O 1.20823 * 119.99815 * 114.99650 * 14 11 2 16 16 O 1.34232 * 119.99215 * 294.99910 * 14 11 2 17 17 C 1.45200 * 116.99096 * 179.97438 * 16 14 11 18 18 C 1.50700 * 109.46794 * 179.97438 * 17 16 14 19 19 O 1.21298 * 120.00172 * 0.02562 * 18 17 16 20 20 N 1.34777 * 120.00458 * 179.97438 * 18 17 16 21 21 C 1.37095 * 120.00390 * 179.97438 * 20 18 17 22 22 H 1.08002 * 119.99692 * 0.02562 * 21 20 18 23 23 C 1.38952 * 119.99752 * 180.02562 * 21 20 18 24 24 N 1.31421 * 119.99564 * 180.02562 * 23 21 20 25 25 Si 1.86796 * 120.00395 * 0.02562 * 23 21 20 26 26 H 1.48500 * 109.47004 * 89.99709 * 25 23 21 27 27 H 1.48495 * 109.47354 * 209.99986 * 25 23 21 28 28 H 1.48502 * 109.47096 * 330.00111 * 25 23 21 29 29 H 1.08997 * 109.47655 * 60.00037 * 1 2 3 30 30 H 1.09009 * 109.46870 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.46908 * 299.99495 * 1 2 3 32 32 H 1.08001 * 119.98467 * 359.96404 * 5 4 2 33 33 H 1.08004 * 119.97321 * 180.02562 * 6 5 4 34 34 H 1.08003 * 119.98749 * 179.97438 * 7 6 5 35 35 H 1.08009 * 120.01360 * 179.97438 * 8 7 6 36 36 H 0.96700 * 114.00311 * 300.00378 * 13 11 2 37 37 H 1.08995 * 109.47524 * 299.99566 * 17 16 14 38 38 H 1.09002 * 109.47518 * 60.00257 * 17 16 14 39 39 H 0.97001 * 119.99558 * 0.02562 * 20 18 17 40 40 H 0.97001 * 119.99709 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7104 1.2304 5 6 1.6987 -2.0338 1.4494 6 6 2.1599 -2.6857 2.5775 7 6 2.9550 -2.0151 3.4885 8 6 3.2898 -0.6922 3.2716 9 6 2.8331 -0.0396 2.1388 10 9 3.1641 1.2524 1.9233 11 6 2.0399 -0.7212 -1.2493 12 1 1.6766 -1.7489 -1.2493 13 8 3.4690 -0.7207 -1.2497 14 6 1.5376 -0.0107 -2.4798 15 8 2.3190 0.5268 -3.2283 16 8 0.2220 0.0248 -2.7440 17 6 -0.1900 0.7272 -3.9461 18 6 -1.6899 0.6618 -4.0770 19 8 -2.3470 0.0807 -3.2392 20 7 -2.3014 1.2497 -5.1243 21 6 -3.6658 1.1897 -5.2436 22 1 -4.2508 0.6717 -4.4980 23 6 -4.2960 1.7955 -6.3237 24 7 -5.6040 1.7384 -6.4378 25 14 -3.2842 2.6909 -7.6136 26 1 -2.9003 1.7411 -8.6886 27 1 -4.0882 3.7965 -8.1937 28 1 -2.0597 3.2470 -6.9838 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0278 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.0772 -2.5584 0.7388 33 1 1.8990 -3.7199 2.7476 34 1 3.3144 -2.5254 4.3698 35 1 3.9106 -0.1683 3.9836 36 1 3.8620 0.1628 -1.2498 37 1 0.1245 1.7690 -3.8841 38 1 0.2709 0.2597 -4.8162 39 1 -1.7759 1.7147 -5.7941 40 1 -6.0440 2.1609 -7.1920 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000870073699.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:49:50 Heat of formation + Delta-G solvation = -187.789079 kcal Electronic energy + Delta-G solvation = -27234.747352 eV Core-core repulsion = 22929.478984 eV Total energy + Delta-G solvation = -4305.268368 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.120 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.16124 -40.93933 -39.54597 -38.47658 -37.37537 -36.24566 -34.38855 -34.08467 -31.83382 -30.84871 -30.24378 -28.77227 -27.04714 -24.68931 -24.14891 -22.94635 -21.54913 -20.66613 -19.69564 -18.70577 -18.46388 -17.82484 -17.42202 -16.81434 -16.68924 -16.00231 -15.87883 -15.71639 -15.47281 -14.95470 -14.89576 -14.46768 -14.12670 -13.96705 -13.78771 -13.42940 -13.15369 -12.92996 -12.71361 -12.55746 -12.38169 -12.26906 -12.22796 -12.07432 -12.01458 -11.38046 -11.29703 -11.12882 -10.88315 -10.67809 -10.51825 -10.25232 -10.07594 -9.70581 -9.23630 -8.92356 -8.70507 -8.32427 -6.42234 -3.95211 0.84912 0.90690 2.02373 2.43333 2.96270 3.01136 3.10076 3.27895 3.51370 3.83827 3.94904 4.01034 4.18740 4.25906 4.40751 4.53057 4.62542 4.75166 4.83001 4.94489 5.01348 5.07782 5.16292 5.28685 5.30833 5.48889 5.55497 5.62956 5.72752 5.73658 5.86520 5.88645 6.06182 6.11314 6.32853 6.43183 6.58976 7.08918 7.40994 7.64600 7.97452 8.44133 8.80413 9.26658 9.61569 10.69938 Molecular weight = 325.12amu Principal moments of inertia in cm(-1) A = 0.024948 B = 0.002561 C = 0.002462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.073333 B =10929.421281 C =11371.846881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.080 4.080 3 H 0.091 0.909 4 C -0.096 4.096 5 C -0.082 4.082 6 C -0.126 4.126 7 C -0.096 4.096 8 C -0.153 4.153 9 C 0.102 3.898 10 F -0.139 7.139 11 C 0.131 3.869 12 H 0.140 0.860 13 O -0.527 6.527 14 C 0.431 3.569 15 O -0.504 6.504 16 O -0.315 6.315 17 C 0.052 3.948 18 C 0.447 3.553 19 O -0.556 6.556 20 N -0.579 5.579 21 C -0.308 4.308 22 H 0.123 0.877 23 C 0.045 3.955 24 N -0.874 5.874 25 Si 0.879 3.121 26 H -0.269 1.269 27 H -0.274 1.274 28 H -0.268 1.268 29 H 0.091 0.909 30 H 0.068 0.932 31 H 0.062 0.938 32 H 0.135 0.865 33 H 0.130 0.870 34 H 0.131 0.869 35 H 0.134 0.866 36 H 0.385 0.615 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.373 0.627 40 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.822 -4.992 16.012 25.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.099 4.099 3 H 0.109 0.891 4 C -0.097 4.097 5 C -0.100 4.100 6 C -0.144 4.144 7 C -0.114 4.114 8 C -0.172 4.172 9 C 0.083 3.917 10 F -0.117 7.117 11 C 0.070 3.930 12 H 0.158 0.842 13 O -0.332 6.332 14 C 0.272 3.728 15 O -0.393 6.393 16 O -0.230 6.230 17 C -0.025 4.025 18 C 0.232 3.768 19 O -0.438 6.438 20 N -0.219 5.219 21 C -0.436 4.436 22 H 0.140 0.860 23 C -0.159 4.159 24 N -0.513 5.513 25 Si 0.705 3.295 26 H -0.194 1.194 27 H -0.199 1.199 28 H -0.194 1.194 29 H 0.110 0.890 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.153 0.847 33 H 0.148 0.852 34 H 0.149 0.851 35 H 0.152 0.848 36 H 0.234 0.766 37 H 0.106 0.894 38 H 0.106 0.894 39 H 0.206 0.794 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 18.296 -5.745 16.201 25.104 hybrid contribution 0.872 1.759 -1.367 2.392 sum 19.168 -3.986 14.834 24.563 Atomic orbital electron populations 1.22027 0.90691 1.04075 1.04244 1.20744 0.99021 0.99606 0.90551 0.89113 1.19595 0.98861 0.95152 0.96092 1.20950 0.98563 0.92921 0.97600 1.21208 0.98264 1.00496 0.94425 1.21011 0.97424 0.93515 0.99421 1.21115 1.02834 0.96029 0.97201 1.17524 0.98878 0.79098 0.96173 1.91484 1.90906 1.34592 1.94764 1.21631 0.82247 1.01264 0.87907 0.84228 1.86648 1.16014 1.34525 1.96058 1.24741 0.81457 0.78523 0.88034 1.90673 1.56936 1.42874 1.48778 1.86642 1.24451 1.69006 1.42863 1.22816 0.96156 0.97539 0.86022 1.19151 0.87137 0.85651 0.84833 1.90605 1.65591 1.45798 1.41784 1.42044 1.08248 1.49393 1.22207 1.19419 0.79512 1.34222 1.10484 0.85965 1.25044 0.95685 0.97530 0.97627 1.69617 1.07602 1.43271 1.30825 0.86683 0.80153 0.80416 0.82273 1.19396 1.19926 1.19378 0.89034 0.91346 0.91848 0.84743 0.85194 0.85128 0.84847 0.76640 0.89415 0.89373 0.79406 0.91361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 8.48 37.16 0.32 -1.48 16 2 C -0.08 -0.84 2.31 -91.77 -0.21 -1.05 16 3 H 0.09 0.97 7.13 -51.93 -0.37 0.60 16 4 C -0.10 -0.95 4.44 -104.55 -0.46 -1.41 16 5 C -0.08 -0.70 8.71 -39.59 -0.34 -1.05 16 6 C -0.13 -0.91 10.04 -39.58 -0.40 -1.31 16 7 C -0.10 -0.67 10.04 -39.60 -0.40 -1.06 16 8 C -0.15 -1.25 10.03 -39.52 -0.40 -1.65 16 9 C 0.10 1.03 7.25 -39.42 -0.29 0.74 16 10 F -0.14 -1.52 16.19 2.25 0.04 -1.49 16 11 C 0.13 1.45 2.91 -27.88 -0.08 1.37 16 12 H 0.14 1.37 7.39 -51.93 -0.38 0.99 16 13 O -0.53 -5.89 12.62 -55.15 -0.70 -6.58 16 14 C 0.43 6.14 7.13 36.01 0.26 6.39 16 15 O -0.50 -8.15 16.07 -25.46 -0.41 -8.56 16 16 O -0.32 -5.13 6.98 -45.91 -0.32 -5.45 16 17 C 0.05 0.89 5.94 36.01 0.21 1.11 16 18 C 0.45 9.93 7.86 -10.99 -0.09 9.84 16 19 O -0.56 -14.48 16.08 -14.12 -0.23 -14.71 16 20 N -0.58 -13.40 5.09 -10.96 -0.06 -13.46 16 21 C -0.31 -8.45 10.16 -14.93 -0.15 -8.60 16 22 H 0.12 3.82 7.39 -52.49 -0.39 3.43 16 23 C 0.05 1.21 5.50 -17.46 -0.10 1.11 16 24 N -0.87 -24.82 13.96 55.50 0.77 -24.05 16 25 Si 0.88 18.82 27.74 -169.99 -4.71 14.11 16 26 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 27 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 28 H -0.27 -5.24 6.52 56.52 0.37 -4.87 16 29 H 0.09 1.31 5.54 -51.93 -0.29 1.03 16 30 H 0.07 0.75 7.39 -51.92 -0.38 0.37 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.13 0.98 7.10 -52.49 -0.37 0.61 16 33 H 0.13 0.66 8.06 -52.48 -0.42 0.23 16 34 H 0.13 0.58 8.06 -52.48 -0.42 0.16 16 35 H 0.13 0.85 8.06 -52.48 -0.42 0.43 16 36 H 0.38 3.51 8.79 45.56 0.40 3.91 16 37 H 0.09 1.33 8.13 -51.93 -0.42 0.91 16 38 H 0.09 1.35 8.13 -51.93 -0.42 0.93 16 39 H 0.37 7.54 5.76 -40.82 -0.24 7.31 16 40 H 0.28 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 349.65 15.07 5.27 5.27 Total: -1.00 -33.32 349.65 -6.19 -39.52 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: -3.72 Total: 12.44 kcal Atomic # 6 Polarization: 5.08 SS G_CDS: -2.13 Total: 2.95 kcal Atomic # 7 Polarization: -38.22 SS G_CDS: 0.72 Total: -37.50 kcal Atomic # 8 Polarization: -33.65 SS G_CDS: -1.65 Total: -35.30 kcal Atomic # 9 Polarization: -1.52 SS G_CDS: 0.04 Total: -1.49 kcal Atomic # 14 Polarization: 18.82 SS G_CDS: -4.71 Total: 14.11 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -33.32 -6.19 -39.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870073699.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -148.273 kcal (2) G-P(sol) polarization free energy of solvation -33.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds