Wall clock time and date at job start Fri Apr 10 2020 14:45:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42906 * 109.47321 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00325 * 2 1 3 5 5 O 1.20826 * 119.99783 * 265.00219 * 4 2 1 6 6 O 1.34224 * 120.00322 * 84.99548 * 4 2 1 7 7 C 1.45193 * 117.00372 * 179.97438 * 6 4 2 8 8 C 1.50703 * 109.47281 * 179.97438 * 7 6 4 9 9 O 1.21273 * 120.00256 * 0.02562 * 8 7 6 10 10 N 1.34778 * 119.99703 * 180.02562 * 8 7 6 11 11 C 1.46504 * 119.99844 * 180.02562 * 10 8 7 12 12 C 1.50699 * 109.47266 * 180.02562 * 11 10 8 13 13 H 1.08004 * 119.99687 * 359.97438 * 12 11 10 14 14 C 1.37876 * 119.99998 * 180.02562 * 12 11 10 15 15 N 1.31519 * 119.99643 * 180.02562 * 14 12 11 16 16 Si 1.86796 * 119.99989 * 0.02562 * 14 12 11 17 17 H 1.48497 * 109.47250 * 90.00231 * 16 14 12 18 18 H 1.48503 * 109.46887 * 210.00046 * 16 14 12 19 19 H 1.48501 * 109.47199 * 329.99854 * 16 14 12 20 20 C 1.50697 * 109.47466 * 119.99976 * 2 1 3 21 21 C 1.38245 * 119.96987 * 29.72928 * 20 2 1 22 22 C 1.38205 * 120.02241 * 179.72574 * 21 20 2 23 23 C 1.38461 * 119.97236 * 0.52745 * 22 21 20 24 24 F 1.35102 * 120.02093 * 179.72814 * 23 22 21 25 25 C 1.38460 * 119.94999 * 359.74198 * 23 22 21 26 26 C 1.38200 * 119.97364 * 0.02562 * 25 23 22 27 27 H 1.09002 * 109.47153 * 299.99798 * 1 2 3 28 28 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47261 * 59.99970 * 1 2 3 30 30 H 0.96693 * 114.00047 * 180.02562 * 3 2 1 31 31 H 1.08997 * 109.47673 * 300.00615 * 7 6 4 32 32 H 1.09006 * 109.46830 * 60.00185 * 7 6 4 33 33 H 0.97002 * 119.99906 * 0.02562 * 10 8 7 34 34 H 1.08998 * 109.46706 * 300.00466 * 11 10 8 35 35 H 1.08997 * 109.46752 * 60.00121 * 11 10 8 36 36 H 0.96996 * 119.99298 * 179.97438 * 15 14 12 37 37 H 1.08001 * 119.99052 * 359.97438 * 21 20 2 38 38 H 1.08004 * 120.01336 * 180.29348 * 22 21 20 39 39 H 1.08000 * 120.00886 * 179.97438 * 25 23 22 40 40 H 1.08000 * 119.98159 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 2.0324 -0.7104 -1.2305 5 8 2.3197 -1.8827 -1.1763 6 8 2.1605 -0.0408 -2.3868 7 6 2.6506 -0.7885 -3.5308 8 6 2.7274 0.1210 -4.7299 9 8 2.4017 1.2849 -4.6301 10 7 3.1582 -0.3591 -5.9133 11 6 3.2334 0.5251 -7.0790 12 6 3.7408 -0.2513 -8.2667 13 1 3.9835 -1.2987 -8.1634 14 6 3.8963 0.3756 -9.4848 15 7 4.3387 -0.3023 -10.5214 16 14 3.4787 2.1875 -9.6627 17 1 4.6835 3.0044 -9.3688 18 1 3.0247 2.4568 -11.0508 19 1 2.3959 2.5418 -8.7103 20 6 2.0324 -0.7104 1.2304 21 6 1.2821 -1.7236 1.7976 22 6 1.7445 -2.3796 2.9227 23 6 2.9545 -2.0143 3.4881 24 9 3.4048 -2.6513 4.5912 25 6 3.7023 -0.9956 2.9224 26 6 3.2402 -0.3443 1.7945 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 -0.8900 30 1 2.9703 1.4236 -0.0004 31 1 3.6423 -1.1830 -3.3093 32 1 1.9708 -1.6135 -3.7439 33 1 3.4184 -1.2902 -5.9932 34 1 2.2418 0.9199 -7.3001 35 1 3.9136 1.3498 -6.8660 36 1 4.4477 0.1387 -11.3784 37 1 0.3363 -2.0053 1.3590 38 1 1.1605 -3.1744 3.3629 39 1 4.6460 -0.7096 3.3629 40 1 3.8232 0.4506 1.3534 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000909884864.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:45:48 Heat of formation + Delta-G solvation = -181.662030 kcal Electronic energy + Delta-G solvation = -26568.984927 eV Core-core repulsion = 22263.982247 eV Total energy + Delta-G solvation = -4305.002680 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.120 amu Computer time = 3.46 seconds Orbital eigenvalues (eV) -49.32192 -41.36937 -39.76789 -38.83754 -37.27004 -36.57708 -34.41575 -32.92941 -32.46424 -31.52166 -29.88095 -29.33939 -27.31721 -25.24534 -23.37712 -23.05575 -22.05522 -20.68332 -20.17230 -19.09424 -18.27214 -17.73483 -17.11702 -16.99097 -16.87493 -16.61182 -16.01507 -15.92716 -15.25409 -15.11722 -15.01154 -14.39311 -14.27402 -14.21482 -13.71147 -13.48597 -13.46288 -13.13685 -12.89671 -12.76851 -12.73915 -12.51807 -12.41044 -12.14462 -12.09997 -11.48607 -11.30282 -11.09850 -10.91346 -10.79596 -10.42245 -10.02618 -9.60135 -9.57500 -9.39833 -9.13815 -8.84644 -8.31055 -6.26824 -4.30115 0.52262 0.74021 1.77008 2.13308 2.97554 3.07099 3.23418 3.30406 3.38144 3.57006 3.72529 3.78798 3.89878 4.11887 4.28530 4.37548 4.43381 4.49627 4.70967 4.91655 4.95221 5.05940 5.09528 5.15820 5.17496 5.22114 5.35040 5.42239 5.59845 5.62390 5.73223 5.88819 6.08529 6.34760 6.69421 6.90920 6.97522 7.05102 7.28398 7.42836 8.00992 8.37481 8.64134 8.76041 9.32103 10.84898 Molecular weight = 325.12amu Principal moments of inertia in cm(-1) A = 0.029372 B = 0.002138 C = 0.002089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.058979 B =13093.742228 C =13397.409564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.198 3.802 3 O -0.524 6.524 4 C 0.434 3.566 5 O -0.493 6.493 6 O -0.315 6.315 7 C 0.045 3.955 8 C 0.502 3.498 9 O -0.533 6.533 10 N -0.699 5.699 11 C 0.222 3.778 12 C -0.547 4.547 13 H 0.081 0.919 14 C 0.078 3.922 15 N -0.890 5.890 16 Si 0.877 3.123 17 H -0.272 1.272 18 H -0.283 1.283 19 H -0.260 1.260 20 C -0.119 4.119 21 C -0.060 4.060 22 C -0.152 4.152 23 C 0.106 3.894 24 F -0.138 7.138 25 C -0.150 4.150 26 C -0.075 4.075 27 H 0.088 0.912 28 H 0.082 0.918 29 H 0.085 0.915 30 H 0.384 0.616 31 H 0.099 0.901 32 H 0.100 0.900 33 H 0.399 0.601 34 H 0.028 0.972 35 H 0.024 0.976 36 H 0.268 0.732 37 H 0.140 0.860 38 H 0.140 0.860 39 H 0.140 0.860 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.372 -2.932 28.301 28.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.155 3.845 3 O -0.331 6.331 4 C 0.275 3.725 5 O -0.380 6.380 6 O -0.229 6.229 7 C -0.033 4.033 8 C 0.285 3.715 9 O -0.410 6.410 10 N -0.350 5.350 11 C 0.101 3.899 12 C -0.584 4.584 13 H 0.099 0.901 14 C -0.126 4.126 15 N -0.527 5.527 16 Si 0.703 3.297 17 H -0.198 1.198 18 H -0.208 1.208 19 H -0.185 1.185 20 C -0.119 4.119 21 C -0.078 4.078 22 C -0.170 4.170 23 C 0.087 3.913 24 F -0.117 7.117 25 C -0.169 4.169 26 C -0.093 4.093 27 H 0.107 0.893 28 H 0.101 0.899 29 H 0.104 0.896 30 H 0.233 0.767 31 H 0.117 0.883 32 H 0.118 0.882 33 H 0.233 0.767 34 H 0.046 0.954 35 H 0.041 0.959 36 H 0.078 0.922 37 H 0.157 0.843 38 H 0.158 0.842 39 H 0.158 0.842 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -6.073 -2.310 28.152 28.892 hybrid contribution 0.873 -0.112 -0.226 0.909 sum -5.200 -2.423 27.926 28.509 Atomic orbital electron populations 1.21926 0.88801 1.03793 1.05600 1.19693 0.97129 0.82007 0.85627 1.86719 1.27633 1.22378 1.96322 1.24641 0.75507 0.86765 0.85612 1.90706 1.45014 1.16913 1.85332 1.86638 1.76039 1.42553 1.17656 1.22905 1.01834 0.94522 0.84004 1.19883 0.79269 0.88395 0.83995 1.90716 1.48513 1.17347 1.84464 1.46076 1.64661 1.14984 1.09273 1.19559 0.97288 0.90447 0.82630 1.21059 1.46122 0.98589 0.92674 0.90136 1.24795 0.93938 0.98511 0.95358 1.69878 1.44826 1.36818 1.01196 0.86811 0.79894 0.85016 0.77949 1.19776 1.20821 1.18452 1.19985 0.96261 0.98659 0.97013 1.20912 0.99652 0.93310 0.93956 1.21160 0.95772 1.02226 0.97871 1.17785 0.94335 0.93901 0.85279 1.91519 1.89026 1.80591 1.50520 1.21084 1.01218 0.96861 0.97719 1.20744 0.94631 0.98853 0.95027 0.89342 0.89907 0.89634 0.76675 0.88287 0.88229 0.76726 0.95397 0.95860 0.92165 0.84278 0.84204 0.84211 0.84829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.12 8.12 37.16 0.30 -0.82 16 2 C 0.20 1.89 1.22 -92.92 -0.11 1.78 16 3 O -0.52 -5.05 12.50 -49.11 -0.61 -5.66 16 4 C 0.43 5.31 6.79 36.01 0.24 5.56 16 5 O -0.49 -6.74 15.99 -18.75 -0.30 -7.04 16 6 O -0.31 -4.55 9.51 -48.33 -0.46 -5.01 16 7 C 0.04 0.63 5.94 36.01 0.21 0.84 16 8 C 0.50 9.29 7.91 -10.98 -0.09 9.20 16 9 O -0.53 -12.05 16.50 -14.10 -0.23 -12.28 16 10 N -0.70 -13.55 5.55 -61.47 -0.34 -13.89 16 11 C 0.22 5.31 4.50 -5.19 -0.02 5.28 16 12 C -0.55 -14.62 9.83 -34.44 -0.34 -14.96 16 13 H 0.08 2.23 7.84 -52.48 -0.41 1.82 16 14 C 0.08 2.17 5.47 -17.82 -0.10 2.07 16 15 N -0.89 -26.00 13.96 55.43 0.77 -25.23 16 16 Si 0.88 21.01 27.47 -169.99 -4.67 16.35 16 17 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 18 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 19 H -0.26 -6.19 6.54 56.52 0.37 -5.82 16 20 C -0.12 -1.02 4.24 -104.62 -0.44 -1.46 16 21 C -0.06 -0.47 9.11 -39.59 -0.36 -0.83 16 22 C -0.15 -1.15 10.03 -39.51 -0.40 -1.54 16 23 C 0.11 0.90 7.30 -39.42 -0.29 0.61 16 24 F -0.14 -1.27 17.27 2.25 0.04 -1.23 16 25 C -0.15 -1.14 10.03 -39.51 -0.40 -1.54 16 26 C -0.07 -0.57 9.31 -39.59 -0.37 -0.94 16 27 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.08 0.51 6.51 -51.93 -0.34 0.17 16 29 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.38 2.54 7.32 45.56 0.33 2.87 16 31 H 0.10 1.19 8.13 -51.93 -0.42 0.77 16 32 H 0.10 1.20 8.13 -51.93 -0.42 0.78 16 33 H 0.40 6.64 8.32 -40.82 -0.34 6.30 16 34 H 0.03 0.70 7.20 -51.93 -0.37 0.33 16 35 H 0.02 0.58 7.57 -51.93 -0.39 0.19 16 36 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 37 H 0.14 0.81 6.16 -52.49 -0.32 0.49 16 38 H 0.14 0.78 8.06 -52.48 -0.42 0.36 16 39 H 0.14 0.80 8.06 -52.49 -0.42 0.37 16 40 H 0.13 0.71 6.49 -52.49 -0.34 0.37 16 LS Contribution 353.67 15.07 5.33 5.33 Total: -1.00 -34.73 353.67 -6.51 -41.24 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: -3.89 Total: 4.18 kcal Atomic # 6 Polarization: 5.40 SS G_CDS: -2.15 Total: 3.24 kcal Atomic # 7 Polarization: -39.56 SS G_CDS: 0.43 Total: -39.12 kcal Atomic # 8 Polarization: -28.39 SS G_CDS: -1.61 Total: -29.99 kcal Atomic # 9 Polarization: -1.27 SS G_CDS: 0.04 Total: -1.23 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -4.67 Total: 16.35 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -34.73 -6.51 -41.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000909884864.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -140.422 kcal (2) G-P(sol) polarization free energy of solvation -34.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.46 seconds