Wall clock time and date at job start Fri Apr 10 2020 14:45:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42906 * 109.47321 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00325 * 2 1 3 5 5 O 1.20826 * 119.99783 * 265.00219 * 4 2 1 6 6 O 1.34224 * 120.00322 * 84.99548 * 4 2 1 7 7 C 1.45193 * 117.00372 * 179.97438 * 6 4 2 8 8 C 1.50703 * 109.47281 * 179.97438 * 7 6 4 9 9 O 1.21273 * 120.00256 * 0.02562 * 8 7 6 10 10 N 1.34778 * 119.99703 * 180.02562 * 8 7 6 11 11 C 1.46504 * 119.99844 * 180.02562 * 10 8 7 12 12 C 1.50699 * 109.47266 * 180.02562 * 11 10 8 13 13 H 1.08004 * 119.99687 * 359.97438 * 12 11 10 14 14 C 1.37876 * 119.99998 * 180.02562 * 12 11 10 15 15 N 1.31519 * 119.99643 * 180.02562 * 14 12 11 16 16 Si 1.86796 * 119.99989 * 0.02562 * 14 12 11 17 17 H 1.48497 * 109.47250 * 90.00231 * 16 14 12 18 18 H 1.48503 * 109.46887 * 210.00046 * 16 14 12 19 19 H 1.48501 * 109.47199 * 329.99854 * 16 14 12 20 20 C 1.50697 * 109.47466 * 119.99976 * 2 1 3 21 21 C 1.38245 * 119.96987 * 29.72928 * 20 2 1 22 22 C 1.38205 * 120.02241 * 179.72574 * 21 20 2 23 23 C 1.38461 * 119.97236 * 0.52745 * 22 21 20 24 24 F 1.35102 * 120.02093 * 179.72814 * 23 22 21 25 25 C 1.38460 * 119.94999 * 359.74198 * 23 22 21 26 26 C 1.38200 * 119.97364 * 0.02562 * 25 23 22 27 27 H 1.09002 * 109.47153 * 299.99798 * 1 2 3 28 28 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47261 * 59.99970 * 1 2 3 30 30 H 0.96693 * 114.00047 * 180.02562 * 3 2 1 31 31 H 1.08997 * 109.47673 * 300.00615 * 7 6 4 32 32 H 1.09006 * 109.46830 * 60.00185 * 7 6 4 33 33 H 0.97002 * 119.99906 * 0.02562 * 10 8 7 34 34 H 1.08998 * 109.46706 * 300.00466 * 11 10 8 35 35 H 1.08997 * 109.46752 * 60.00121 * 11 10 8 36 36 H 0.96996 * 119.99298 * 179.97438 * 15 14 12 37 37 H 1.08001 * 119.99052 * 359.97438 * 21 20 2 38 38 H 1.08004 * 120.01336 * 180.29348 * 22 21 20 39 39 H 1.08000 * 120.00886 * 179.97438 * 25 23 22 40 40 H 1.08000 * 119.98159 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 2.0324 -0.7104 -1.2305 5 8 2.3197 -1.8827 -1.1763 6 8 2.1605 -0.0408 -2.3868 7 6 2.6506 -0.7885 -3.5308 8 6 2.7274 0.1210 -4.7299 9 8 2.4017 1.2849 -4.6301 10 7 3.1582 -0.3591 -5.9133 11 6 3.2334 0.5251 -7.0790 12 6 3.7408 -0.2513 -8.2667 13 1 3.9835 -1.2987 -8.1634 14 6 3.8963 0.3756 -9.4848 15 7 4.3387 -0.3023 -10.5214 16 14 3.4787 2.1875 -9.6627 17 1 4.6835 3.0044 -9.3688 18 1 3.0247 2.4568 -11.0508 19 1 2.3959 2.5418 -8.7103 20 6 2.0324 -0.7104 1.2304 21 6 1.2821 -1.7236 1.7976 22 6 1.7445 -2.3796 2.9227 23 6 2.9545 -2.0143 3.4881 24 9 3.4048 -2.6513 4.5912 25 6 3.7023 -0.9956 2.9224 26 6 3.2402 -0.3443 1.7945 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 -0.8900 30 1 2.9703 1.4236 -0.0004 31 1 3.6423 -1.1830 -3.3093 32 1 1.9708 -1.6135 -3.7439 33 1 3.4184 -1.2902 -5.9932 34 1 2.2418 0.9199 -7.3001 35 1 3.9136 1.3498 -6.8660 36 1 4.4477 0.1387 -11.3784 37 1 0.3363 -2.0053 1.3590 38 1 1.1605 -3.1744 3.3629 39 1 4.6460 -0.7096 3.3629 40 1 3.8232 0.4506 1.3534 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000909884864.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:45:43 Heat of formation + Delta-G solvation = -205.841038 kcal Electronic energy + Delta-G solvation = -26570.033407 eV Core-core repulsion = 22263.982247 eV Total energy + Delta-G solvation = -4306.051160 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.120 amu Computer time = 2.76 seconds Orbital eigenvalues (eV) -49.96655 -42.25543 -40.79080 -40.06738 -37.97269 -37.64233 -36.20876 -34.46709 -33.57698 -32.08246 -31.22592 -30.15402 -28.90191 -26.04199 -24.28512 -23.92411 -23.47994 -21.74321 -21.46972 -19.91222 -19.37712 -18.85166 -18.36380 -17.99970 -17.78980 -17.38794 -17.36124 -16.90145 -16.64419 -16.31417 -16.06835 -15.66292 -15.19602 -15.04765 -14.80425 -14.55458 -14.43273 -14.26937 -14.05925 -14.02932 -13.71621 -13.39830 -13.28353 -13.24224 -13.08703 -12.92968 -12.71091 -12.08990 -11.96139 -11.94251 -11.93455 -11.67531 -11.30052 -10.95931 -10.92481 -10.14603 -10.04805 -9.75656 -8.40285 -6.47921 -0.09703 0.19579 0.84205 1.14725 1.33869 1.36974 1.48053 1.50975 2.27892 2.32583 2.56975 2.94838 2.95135 3.16480 3.27954 3.48035 3.55532 3.66143 3.84601 3.91322 4.00740 4.02069 4.20028 4.37488 4.60500 4.65639 4.74493 4.81800 4.88287 5.00194 5.01994 5.06670 5.12959 5.16843 5.23543 5.32224 5.39261 5.78834 6.04899 6.25351 6.51523 6.55418 6.71168 7.11184 7.26706 8.74203 Molecular weight = 325.12amu Principal moments of inertia in cm(-1) A = 0.029372 B = 0.002138 C = 0.002089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.058979 B =13093.742228 C =13397.409564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.203 3.797 3 O -0.535 6.535 4 C 0.438 3.562 5 O -0.507 6.507 6 O -0.333 6.333 7 C 0.053 3.947 8 C 0.505 3.495 9 O -0.575 6.575 10 N -0.697 5.697 11 C 0.232 3.768 12 C -0.548 4.548 13 H 0.061 0.939 14 C 0.026 3.974 15 N -0.930 5.930 16 Si 0.937 3.063 17 H -0.265 1.265 18 H -0.274 1.274 19 H -0.259 1.259 20 C -0.130 4.130 21 C -0.065 4.065 22 C -0.155 4.155 23 C 0.089 3.911 24 F -0.146 7.146 25 C -0.154 4.154 26 C -0.081 4.081 27 H 0.103 0.897 28 H 0.099 0.901 29 H 0.073 0.927 30 H 0.394 0.606 31 H 0.124 0.876 32 H 0.123 0.877 33 H 0.413 0.587 34 H 0.017 0.983 35 H 0.017 0.983 36 H 0.273 0.727 37 H 0.157 0.843 38 H 0.157 0.843 39 H 0.155 0.845 40 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.865 -2.723 29.783 30.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.160 3.840 3 O -0.343 6.343 4 C 0.280 3.720 5 O -0.395 6.395 6 O -0.248 6.248 7 C -0.023 4.023 8 C 0.290 3.710 9 O -0.455 6.455 10 N -0.349 5.349 11 C 0.109 3.891 12 C -0.586 4.586 13 H 0.080 0.920 14 C -0.175 4.175 15 N -0.569 5.569 16 Si 0.761 3.239 17 H -0.189 1.189 18 H -0.199 1.199 19 H -0.183 1.183 20 C -0.130 4.130 21 C -0.083 4.083 22 C -0.173 4.173 23 C 0.070 3.930 24 F -0.125 7.125 25 C -0.173 4.173 26 C -0.099 4.099 27 H 0.121 0.879 28 H 0.117 0.883 29 H 0.092 0.908 30 H 0.246 0.754 31 H 0.141 0.859 32 H 0.141 0.859 33 H 0.249 0.751 34 H 0.035 0.965 35 H 0.034 0.966 36 H 0.082 0.918 37 H 0.174 0.826 38 H 0.175 0.825 39 H 0.173 0.827 40 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -6.553 -2.133 29.659 30.450 hybrid contribution 1.045 -0.246 -0.630 1.244 sum -5.508 -2.378 29.030 29.643 Atomic orbital electron populations 1.22025 0.87648 1.04965 1.05747 1.19781 0.97948 0.81704 0.84534 1.86705 1.28858 1.22566 1.96198 1.25236 0.74714 0.86683 0.85395 1.90696 1.45770 1.17615 1.85426 1.86640 1.76414 1.43427 1.18338 1.22793 1.03944 0.93303 0.82292 1.20548 0.77479 0.88332 0.84600 1.90694 1.50153 1.19492 1.85187 1.45868 1.65044 1.15216 1.08753 1.19170 0.96141 0.90516 0.83264 1.21270 1.45445 0.98066 0.93799 0.92050 1.25606 0.93944 1.02726 0.95191 1.69982 1.46314 1.38708 1.01885 0.85858 0.79863 0.80009 0.78185 1.18940 1.19948 1.18270 1.20039 0.96929 0.99199 0.96851 1.21156 1.00296 0.92937 0.93913 1.21389 0.95628 1.02534 0.97764 1.18064 0.95064 0.94478 0.85426 1.91497 1.89181 1.80817 1.50963 1.21307 1.01788 0.96527 0.97678 1.21020 0.94604 0.99268 0.94984 0.87877 0.88288 0.90789 0.75416 0.85865 0.85881 0.75114 0.96490 0.96556 0.91825 0.82574 0.82512 0.82698 0.82936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 8.12 71.98 0.58 -1.42 16 2 C 0.20 3.50 1.22 -12.29 -0.01 3.48 16 3 O -0.53 -9.47 12.50 -135.71 -1.70 -11.17 16 4 C 0.44 9.89 6.79 71.24 0.48 10.37 16 5 O -0.51 -12.80 15.99 21.97 0.35 -12.45 16 6 O -0.33 -9.08 9.51 -42.67 -0.41 -9.48 16 7 C 0.05 1.38 5.94 71.24 0.42 1.80 16 8 C 0.50 18.10 7.91 87.66 0.69 18.79 16 9 O -0.58 -25.69 16.50 15.79 0.26 -25.43 16 10 N -0.70 -26.39 5.55 -466.79 -2.59 -28.98 16 11 C 0.23 11.00 4.50 85.63 0.38 11.38 16 12 C -0.55 -29.42 9.83 25.60 0.25 -29.17 16 13 H 0.06 3.45 7.84 -2.91 -0.02 3.43 16 14 C 0.03 1.43 5.47 84.65 0.46 1.89 16 15 N -0.93 -54.71 13.96 21.45 0.30 -54.41 16 16 Si 0.94 43.11 27.47 68.60 1.88 44.99 16 17 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 18 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 19 H -0.26 -11.73 6.54 99.48 0.65 -11.08 16 20 C -0.13 -1.98 4.24 -19.86 -0.08 -2.06 16 21 C -0.07 -0.87 9.11 22.26 0.20 -0.67 16 22 C -0.15 -2.08 10.03 22.32 0.22 -1.86 16 23 C 0.09 1.39 7.30 22.38 0.16 1.56 16 24 F -0.15 -2.56 17.27 44.97 0.78 -1.78 16 25 C -0.15 -2.12 10.03 22.31 0.22 -1.89 16 26 C -0.08 -1.09 9.31 22.26 0.21 -0.88 16 27 H 0.10 1.09 8.14 -2.39 -0.02 1.08 16 28 H 0.10 0.98 6.51 -2.39 -0.02 0.97 16 29 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 30 H 0.39 4.61 7.32 -74.06 -0.54 4.07 16 31 H 0.12 2.62 8.13 -2.39 -0.02 2.60 16 32 H 0.12 2.64 8.13 -2.38 -0.02 2.62 16 33 H 0.41 13.28 8.32 -92.71 -0.77 12.51 16 34 H 0.02 0.85 7.20 -2.39 -0.02 0.83 16 35 H 0.02 0.81 7.57 -2.39 -0.02 0.79 16 36 H 0.27 14.95 8.31 -92.71 -0.77 14.18 16 37 H 0.16 1.43 6.16 -2.91 -0.02 1.41 16 38 H 0.16 1.45 8.06 -2.91 -0.02 1.42 16 39 H 0.16 1.52 8.06 -2.91 -0.02 1.49 16 40 H 0.15 1.31 6.49 -2.91 -0.02 1.29 16 Total: -1.00 -73.95 353.67 2.83 -71.12 By element: Atomic # 1 Polarization: 16.51 SS G_CDS: -0.25 Total: 16.26 kcal Atomic # 6 Polarization: 7.12 SS G_CDS: 4.21 Total: 11.32 kcal Atomic # 7 Polarization: -81.10 SS G_CDS: -2.29 Total: -83.39 kcal Atomic # 8 Polarization: -57.03 SS G_CDS: -1.49 Total: -58.52 kcal Atomic # 9 Polarization: -2.56 SS G_CDS: 0.78 Total: -1.78 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 1.88 Total: 44.99 kcal Total: -73.95 2.83 -71.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000909884864.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.726 kcal (2) G-P(sol) polarization free energy of solvation -73.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -208.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -205.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.76 seconds