Wall clock time and date at job start Fri Apr 10 2020 14:48:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46503 * 120.00236 * 2 1 4 4 C 1.50697 * 109.47395 * 275.00388 * 3 2 1 5 5 H 1.07998 * 119.99969 * 0.02562 * 4 3 2 6 6 C 1.37873 * 120.00166 * 179.97438 * 4 3 2 7 7 N 1.31518 * 119.99840 * 359.97438 * 6 4 3 8 8 Si 1.86799 * 120.00308 * 179.97438 * 6 4 3 9 9 H 1.48499 * 109.46991 * 89.99869 * 8 6 4 10 10 H 1.48493 * 109.47440 * 210.00032 * 8 6 4 11 11 H 1.48501 * 109.47038 * 329.99933 * 8 6 4 12 12 S 1.65594 * 119.99776 * 180.02562 * 2 1 3 13 13 O 1.42104 * 106.40584 * 336.45605 * 12 2 1 14 14 O 1.42104 * 106.40263 * 203.54069 * 12 2 1 15 15 N 1.65603 * 107.22400 * 90.00142 * 12 2 1 16 16 C 1.47419 * 125.65136 * 90.01738 * 15 12 2 17 17 C 1.54905 * 104.92834 * 155.80118 * 16 15 12 18 18 C 1.55448 * 101.45165 * 37.00468 * 17 16 15 19 19 H 1.08997 * 110.70436 * 82.89324 * 18 17 16 20 20 C 1.50698 * 110.86030 * 206.07558 * 18 17 16 21 21 C 1.38676 * 120.41793 * 233.63806 * 20 18 17 22 22 C 1.38631 * 118.42010 * 180.02562 * 21 20 18 23 23 C 1.38223 * 119.16103 * 359.97438 * 22 21 20 24 24 N 1.31853 * 120.76372 * 0.02562 * 23 22 21 25 25 C 1.31884 * 121.72519 * 359.70241 * 24 23 22 26 26 C 1.47026 * 125.64288 * 270.00187 * 15 12 2 27 27 H 1.09000 * 109.46802 * 269.99790 * 1 2 3 28 28 H 1.09003 * 109.46812 * 29.99434 * 1 2 3 29 29 H 1.08995 * 109.46974 * 149.99303 * 1 2 3 30 30 H 1.09007 * 109.46726 * 35.00423 * 3 2 1 31 31 H 1.08994 * 109.47083 * 154.99874 * 3 2 1 32 32 H 0.96997 * 120.00153 * 180.02562 * 7 6 4 33 33 H 1.09002 * 110.36926 * 274.69587 * 16 15 12 34 34 H 1.08995 * 110.36556 * 36.90871 * 16 15 12 35 35 H 1.09002 * 111.00852 * 155.13877 * 17 16 15 36 36 H 1.09004 * 111.00578 * 278.99532 * 17 16 15 37 37 H 1.08002 * 120.78751 * 359.97438 * 21 20 18 38 38 H 1.08005 * 120.41917 * 180.02562 * 22 21 20 39 39 H 1.08007 * 119.61435 * 179.97438 * 23 22 21 40 40 H 1.08004 * 119.61741 * 180.31296 * 25 24 23 41 41 H 1.08998 * 109.88266 * 300.48868 * 26 15 12 42 42 H 1.08997 * 109.88244 * 61.50225 * 26 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.3415 1.7658 -1.4153 5 1 1.9282 1.1940 -2.2331 6 6 2.9998 2.9509 -1.6663 7 7 3.5018 3.6479 -0.6703 8 14 3.1788 3.5667 -3.4207 9 1 2.0180 4.4267 -3.7643 10 1 4.4318 4.3541 -3.5436 11 1 3.2290 2.4087 -4.3491 12 16 2.2930 -1.4341 -0.0006 13 8 1.4113 -2.4068 0.5434 14 8 3.5759 -1.1571 0.5439 15 7 2.5382 -1.8581 -1.5826 16 6 3.7030 -1.4794 -2.4030 17 6 3.7861 -2.5663 -3.5036 18 6 2.2814 -2.8294 -3.7919 19 1 1.8869 -2.0883 -4.4871 20 6 2.0730 -4.2229 -4.3262 21 6 1.3937 -4.4235 -5.5184 22 6 1.2252 -5.7229 -5.9712 23 6 1.7367 -6.7679 -5.2250 24 7 2.3775 -6.5396 -4.0954 25 6 2.5610 -5.3167 -3.6371 26 6 1.6302 -2.6747 -2.4013 27 1 -0.3633 0.0000 1.0277 28 1 -0.3633 0.8901 -0.5138 29 1 -0.3633 -0.8899 -0.5139 30 1 1.6502 2.0043 0.5896 31 1 3.1858 1.1177 0.4343 32 1 3.9646 4.4819 -0.8467 33 1 3.5489 -0.4975 -2.8504 34 1 4.6098 -1.4819 -1.7982 35 1 4.2952 -2.1870 -4.3897 36 1 4.2752 -3.4654 -3.1288 37 1 1.0045 -3.5873 -6.0803 38 1 0.7016 -5.9162 -6.8959 39 1 1.6093 -7.7831 -5.5707 40 1 3.0954 -5.1686 -2.7103 41 1 1.4980 -3.6548 -1.9429 42 1 0.6655 -2.1761 -2.4946 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000520573855.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:48:33 Heat of formation + Delta-G solvation = -36.861084 kcal Electronic energy + Delta-G solvation = -26293.552534 eV Core-core repulsion = 22593.334822 eV Total energy + Delta-G solvation = -3700.217712 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.125 amu Computer time = 2.11 seconds Orbital eigenvalues (eV) -40.55920 -38.16667 -36.67136 -35.49207 -35.23125 -33.31365 -32.51810 -32.09002 -29.75505 -28.35082 -27.79085 -25.10629 -24.01360 -23.55591 -22.37786 -21.96610 -20.51239 -18.48639 -17.51943 -17.25217 -16.93965 -16.59625 -16.35715 -15.54461 -15.46322 -14.96876 -14.49675 -14.09723 -13.87059 -13.72560 -13.42494 -13.25839 -13.23467 -12.98888 -12.66864 -12.38643 -12.22654 -12.20566 -11.73666 -11.66825 -11.53262 -11.23601 -11.21990 -11.15563 -11.10683 -10.80427 -10.71253 -10.55677 -10.12228 -9.95948 -9.81682 -9.59463 -9.11749 -8.65458 -8.52866 -8.06610 -6.14647 -4.21599 0.89130 1.08137 1.22012 3.20546 3.27435 3.29101 3.46006 3.59259 4.11384 4.20881 4.31955 4.47914 4.52716 4.62009 4.72396 4.80014 4.91303 5.07026 5.14281 5.19421 5.34630 5.41857 5.49094 5.56259 5.62707 5.70653 5.84507 5.87523 5.96704 6.04775 6.06403 6.15167 6.20646 6.35108 6.45318 6.49753 6.52836 6.72306 7.31060 7.40652 7.60946 7.79500 7.82134 8.11754 8.83164 9.44256 10.93454 Molecular weight = 325.12amu Principal moments of inertia in cm(-1) A = 0.014172 B = 0.004318 C = 0.003663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1975.261354 B = 6483.019383 C = 7642.345126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.996 5.996 3 C 0.244 3.756 4 C -0.539 4.539 5 H 0.063 0.937 6 C 0.064 3.936 7 N -0.889 5.889 8 Si 0.894 3.106 9 H -0.281 1.281 10 H -0.285 1.285 11 H -0.273 1.273 12 S 2.800 3.200 13 O -0.996 6.996 14 O -0.973 6.973 15 N -1.015 6.015 16 C 0.119 3.881 17 C -0.121 4.121 18 C -0.056 4.056 19 H 0.097 0.903 20 C -0.118 4.118 21 C -0.071 4.071 22 C -0.172 4.172 23 C 0.089 3.911 24 N -0.483 5.483 25 C 0.105 3.895 26 C 0.134 3.866 27 H 0.044 0.956 28 H 0.073 0.927 29 H 0.051 0.949 30 H 0.037 0.963 31 H 0.051 0.949 32 H 0.265 0.735 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.076 0.924 37 H 0.135 0.865 38 H 0.133 0.867 39 H 0.153 0.847 40 H 0.156 0.844 41 H 0.067 0.933 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.364 -14.185 -10.307 18.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.838 5.838 3 C 0.121 3.879 4 C -0.579 4.579 5 H 0.081 0.919 6 C -0.139 4.139 7 N -0.527 5.527 8 Si 0.722 3.278 9 H -0.207 1.207 10 H -0.211 1.211 11 H -0.198 1.198 12 S 2.810 3.190 13 O -0.980 6.980 14 O -0.957 6.957 15 N -0.854 5.854 16 C -0.006 4.006 17 C -0.160 4.160 18 C -0.077 4.077 19 H 0.115 0.885 20 C -0.121 4.121 21 C -0.097 4.097 22 C -0.192 4.192 23 C -0.068 4.068 24 N -0.191 5.191 25 C -0.052 4.052 26 C 0.008 3.992 27 H 0.063 0.937 28 H 0.092 0.908 29 H 0.070 0.930 30 H 0.056 0.944 31 H 0.069 0.931 32 H 0.074 0.926 33 H 0.101 0.899 34 H 0.101 0.899 35 H 0.102 0.898 36 H 0.094 0.906 37 H 0.153 0.847 38 H 0.151 0.849 39 H 0.170 0.830 40 H 0.173 0.827 41 H 0.086 0.914 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -3.671 -15.172 -8.890 17.964 hybrid contribution -0.495 1.549 -1.919 2.515 sum -4.166 -13.623 -10.809 17.883 Atomic orbital electron populations 1.21218 0.80153 1.01975 1.00655 1.57706 1.14211 1.23568 1.88354 1.19227 0.92187 0.78875 0.97570 1.21538 1.36574 1.06828 0.92914 0.91915 1.24961 0.95216 0.96521 0.97191 1.69934 1.36749 1.15092 1.30929 0.86575 0.77631 0.78964 0.84663 1.20685 1.21102 1.19786 1.01335 0.73081 0.72567 0.72058 1.93537 1.67399 1.60457 1.76620 1.93573 1.40872 1.85269 1.75985 1.59120 1.30350 1.65393 1.30541 1.22032 0.88287 0.98270 0.92015 1.22975 0.94299 0.99553 0.99180 1.21227 0.97239 0.92575 0.96648 0.88503 1.20761 0.99013 0.96394 0.95907 1.21551 0.95776 0.97481 0.94926 1.22135 1.01871 0.93589 1.01621 1.22766 0.93845 0.99536 0.90628 1.67724 1.13956 1.24018 1.13432 1.22717 0.96228 0.87077 0.99166 1.21638 0.92729 0.95177 0.89690 0.93701 0.90821 0.93040 0.94446 0.93099 0.92550 0.89940 0.89915 0.89791 0.90587 0.84707 0.84868 0.82961 0.82654 0.91445 0.91693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.84 10.31 59.85 0.62 2.45 16 2 N -1.00 -20.66 3.23 -123.05 -0.40 -21.05 16 3 C 0.24 6.00 5.41 -5.19 -0.03 5.97 16 4 C -0.54 -13.71 9.38 -34.44 -0.32 -14.03 16 5 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 6 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 7 N -0.89 -24.97 13.29 55.43 0.74 -24.24 16 8 Si 0.89 20.01 29.54 -169.99 -5.02 14.99 16 9 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 10 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 11 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 12 S 2.80 56.29 6.31 -107.50 -0.68 55.61 16 13 O -1.00 -20.66 16.79 -57.17 -0.96 -21.62 16 14 O -0.97 -22.60 16.01 -57.17 -0.92 -23.52 16 15 N -1.02 -16.83 3.76 -111.43 -0.42 -17.25 16 16 C 0.12 1.83 7.10 -2.53 -0.02 1.81 16 17 C -0.12 -1.39 6.49 -24.43 -0.16 -1.55 16 18 C -0.06 -0.62 3.18 -89.78 -0.29 -0.91 16 19 H 0.10 0.99 8.00 -51.93 -0.42 0.57 16 20 C -0.12 -1.24 4.93 -104.48 -0.52 -1.75 16 21 C -0.07 -0.64 9.82 -39.27 -0.39 -1.02 16 22 C -0.17 -1.40 10.11 -39.44 -0.40 -1.80 16 23 C 0.09 0.84 11.18 -17.55 -0.20 0.64 16 24 N -0.48 -5.80 10.36 -13.25 -0.14 -5.93 16 25 C 0.11 1.21 9.36 -17.55 -0.16 1.05 16 26 C 0.13 1.81 6.51 -3.06 -0.02 1.79 16 27 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.07 1.24 8.07 -51.93 -0.42 0.82 16 29 H 0.05 0.78 7.79 -51.93 -0.40 0.37 16 30 H 0.04 0.96 8.11 -51.93 -0.42 0.54 16 31 H 0.05 1.38 6.91 -51.93 -0.36 1.02 16 32 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 33 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 34 H 0.08 1.32 7.78 -51.93 -0.40 0.92 16 35 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.08 0.81 6.79 -51.93 -0.35 0.46 16 37 H 0.14 0.94 8.03 -52.49 -0.42 0.52 16 38 H 0.13 0.72 8.06 -52.48 -0.42 0.30 16 39 H 0.15 1.02 8.06 -52.48 -0.42 0.60 16 40 H 0.16 1.73 7.29 -52.48 -0.38 1.34 16 41 H 0.07 0.90 7.14 -51.93 -0.37 0.53 16 42 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 360.58 15.07 5.43 5.43 Total: -1.00 -32.42 360.58 -10.36 -42.78 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: -6.03 Total: 0.56 kcal Atomic # 6 Polarization: -3.78 SS G_CDS: -1.97 Total: -5.76 kcal Atomic # 7 Polarization: -68.26 SS G_CDS: -0.22 Total: -68.47 kcal Atomic # 8 Polarization: -43.26 SS G_CDS: -1.88 Total: -45.14 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.02 Total: 14.99 kcal Atomic # 16 Polarization: 56.29 SS G_CDS: -0.68 Total: 55.61 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.42 -10.36 -42.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000520573855.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.919 kcal (2) G-P(sol) polarization free energy of solvation -32.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.11 seconds