Wall clock time and date at job start Fri Apr 10 2020 14:48:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46503 * 120.00236 * 2 1 4 4 C 1.50697 * 109.47395 * 275.00388 * 3 2 1 5 5 H 1.07998 * 119.99969 * 0.02562 * 4 3 2 6 6 C 1.37873 * 120.00166 * 179.97438 * 4 3 2 7 7 N 1.31518 * 119.99840 * 359.97438 * 6 4 3 8 8 Si 1.86799 * 120.00308 * 179.97438 * 6 4 3 9 9 H 1.48499 * 109.46991 * 89.99869 * 8 6 4 10 10 H 1.48493 * 109.47440 * 210.00032 * 8 6 4 11 11 H 1.48501 * 109.47038 * 329.99933 * 8 6 4 12 12 S 1.65594 * 119.99776 * 180.02562 * 2 1 3 13 13 O 1.42104 * 106.40584 * 336.45605 * 12 2 1 14 14 O 1.42104 * 106.40263 * 203.54069 * 12 2 1 15 15 N 1.65603 * 107.22400 * 90.00142 * 12 2 1 16 16 C 1.47419 * 125.65136 * 90.01738 * 15 12 2 17 17 C 1.54905 * 104.92834 * 155.80118 * 16 15 12 18 18 C 1.55448 * 101.45165 * 37.00468 * 17 16 15 19 19 H 1.08997 * 110.70436 * 82.89324 * 18 17 16 20 20 C 1.50698 * 110.86030 * 206.07558 * 18 17 16 21 21 C 1.38676 * 120.41793 * 233.63806 * 20 18 17 22 22 C 1.38631 * 118.42010 * 180.02562 * 21 20 18 23 23 C 1.38223 * 119.16103 * 359.97438 * 22 21 20 24 24 N 1.31853 * 120.76372 * 0.02562 * 23 22 21 25 25 C 1.31884 * 121.72519 * 359.70241 * 24 23 22 26 26 C 1.47026 * 125.64288 * 270.00187 * 15 12 2 27 27 H 1.09000 * 109.46802 * 269.99790 * 1 2 3 28 28 H 1.09003 * 109.46812 * 29.99434 * 1 2 3 29 29 H 1.08995 * 109.46974 * 149.99303 * 1 2 3 30 30 H 1.09007 * 109.46726 * 35.00423 * 3 2 1 31 31 H 1.08994 * 109.47083 * 154.99874 * 3 2 1 32 32 H 0.96997 * 120.00153 * 180.02562 * 7 6 4 33 33 H 1.09002 * 110.36926 * 274.69587 * 16 15 12 34 34 H 1.08995 * 110.36556 * 36.90871 * 16 15 12 35 35 H 1.09002 * 111.00852 * 155.13877 * 17 16 15 36 36 H 1.09004 * 111.00578 * 278.99532 * 17 16 15 37 37 H 1.08002 * 120.78751 * 359.97438 * 21 20 18 38 38 H 1.08005 * 120.41917 * 180.02562 * 22 21 20 39 39 H 1.08007 * 119.61435 * 179.97438 * 23 22 21 40 40 H 1.08004 * 119.61741 * 180.31296 * 25 24 23 41 41 H 1.08998 * 109.88266 * 300.48868 * 26 15 12 42 42 H 1.08997 * 109.88244 * 61.50225 * 26 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.3415 1.7658 -1.4153 5 1 1.9282 1.1940 -2.2331 6 6 2.9998 2.9509 -1.6663 7 7 3.5018 3.6479 -0.6703 8 14 3.1788 3.5667 -3.4207 9 1 2.0180 4.4267 -3.7643 10 1 4.4318 4.3541 -3.5436 11 1 3.2290 2.4087 -4.3491 12 16 2.2930 -1.4341 -0.0006 13 8 1.4113 -2.4068 0.5434 14 8 3.5759 -1.1571 0.5439 15 7 2.5382 -1.8581 -1.5826 16 6 3.7030 -1.4794 -2.4030 17 6 3.7861 -2.5663 -3.5036 18 6 2.2814 -2.8294 -3.7919 19 1 1.8869 -2.0883 -4.4871 20 6 2.0730 -4.2229 -4.3262 21 6 1.3937 -4.4235 -5.5184 22 6 1.2252 -5.7229 -5.9712 23 6 1.7367 -6.7679 -5.2250 24 7 2.3775 -6.5396 -4.0954 25 6 2.5610 -5.3167 -3.6371 26 6 1.6302 -2.6747 -2.4013 27 1 -0.3633 0.0000 1.0277 28 1 -0.3633 0.8901 -0.5138 29 1 -0.3633 -0.8899 -0.5139 30 1 1.6502 2.0043 0.5896 31 1 3.1858 1.1177 0.4343 32 1 3.9646 4.4819 -0.8467 33 1 3.5489 -0.4975 -2.8504 34 1 4.6098 -1.4819 -1.7982 35 1 4.2952 -2.1870 -4.3897 36 1 4.2752 -3.4654 -3.1288 37 1 1.0045 -3.5873 -6.0803 38 1 0.7016 -5.9162 -6.8959 39 1 1.6093 -7.7831 -5.5707 40 1 3.0954 -5.1686 -2.7103 41 1 1.4980 -3.6548 -1.9429 42 1 0.6655 -2.1761 -2.4946 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000520573855.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:48:32 Heat of formation + Delta-G solvation = -59.167770 kcal Electronic energy + Delta-G solvation = -26294.519825 eV Core-core repulsion = 22593.334822 eV Total energy + Delta-G solvation = -3701.185003 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.125 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.32739 -39.20707 -38.37245 -37.22350 -36.94708 -34.47724 -34.21201 -32.83380 -30.80411 -29.69398 -29.27640 -26.79175 -24.82924 -24.41180 -24.14056 -23.15566 -21.39160 -19.97993 -18.93839 -18.67519 -18.20030 -18.04967 -17.51491 -17.10283 -16.54467 -16.30756 -15.74128 -15.32238 -15.01890 -14.85635 -14.77443 -14.55844 -14.16796 -14.04148 -13.97086 -13.90745 -13.72732 -13.44098 -13.31517 -13.12882 -13.02094 -12.90519 -12.72339 -12.47060 -12.44814 -12.38400 -12.07154 -11.88936 -11.72812 -11.66531 -10.66353 -10.57308 -10.33428 -10.04036 -9.85466 -9.71555 -8.15199 -6.29806 -0.39302 0.18898 0.40297 1.46177 1.46551 1.57186 1.94846 2.44448 2.54589 2.84983 3.16293 3.22180 3.48480 3.59640 3.76054 3.83601 4.05649 4.07062 4.11039 4.21131 4.33931 4.36034 4.53168 4.62101 4.66902 4.67862 4.77125 4.89051 4.91567 4.96283 5.00802 5.04230 5.12036 5.23219 5.25049 5.30783 5.37125 5.45659 5.53320 5.75587 5.83181 5.92815 6.10632 6.82256 7.07553 7.40694 8.93333 Molecular weight = 325.12amu Principal moments of inertia in cm(-1) A = 0.014172 B = 0.004318 C = 0.003663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1975.261354 B = 6483.019383 C = 7642.345126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -1.003 6.003 3 C 0.257 3.743 4 C -0.539 4.539 5 H 0.075 0.925 6 C 0.009 3.991 7 N -0.932 5.932 8 Si 0.962 3.038 9 H -0.276 1.276 10 H -0.290 1.290 11 H -0.252 1.252 12 S 2.811 3.189 13 O -1.004 7.004 14 O -1.012 7.012 15 N -1.014 6.014 16 C 0.113 3.887 17 C -0.110 4.110 18 C -0.043 4.043 19 H 0.114 0.886 20 C -0.124 4.124 21 C -0.071 4.071 22 C -0.165 4.165 23 C 0.079 3.921 24 N -0.515 5.515 25 C 0.086 3.914 26 C 0.124 3.876 27 H 0.055 0.945 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.019 0.981 31 H 0.016 0.984 32 H 0.265 0.735 33 H 0.070 0.930 34 H 0.067 0.933 35 H 0.106 0.894 36 H 0.080 0.920 37 H 0.160 0.840 38 H 0.166 0.834 39 H 0.176 0.824 40 H 0.147 0.853 41 H 0.066 0.934 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.764 -15.207 -13.888 21.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.845 5.845 3 C 0.134 3.866 4 C -0.578 4.578 5 H 0.093 0.907 6 C -0.190 4.190 7 N -0.571 5.571 8 Si 0.786 3.214 9 H -0.201 1.201 10 H -0.216 1.216 11 H -0.175 1.175 12 S 2.822 3.178 13 O -0.988 6.988 14 O -0.996 6.996 15 N -0.855 5.855 16 C -0.012 4.012 17 C -0.149 4.149 18 C -0.064 4.064 19 H 0.133 0.867 20 C -0.126 4.126 21 C -0.096 4.096 22 C -0.184 4.184 23 C -0.078 4.078 24 N -0.224 5.224 25 C -0.070 4.070 26 C -0.001 4.001 27 H 0.073 0.927 28 H 0.095 0.905 29 H 0.094 0.906 30 H 0.037 0.963 31 H 0.034 0.966 32 H 0.074 0.926 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.124 0.876 36 H 0.099 0.901 37 H 0.178 0.822 38 H 0.184 0.816 39 H 0.193 0.807 40 H 0.164 0.836 41 H 0.084 0.916 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -5.102 -16.220 -12.461 21.081 hybrid contribution -0.108 1.757 -0.796 1.931 sum -5.210 -14.464 -13.257 20.300 Atomic orbital electron populations 1.21456 0.78031 1.03329 1.01868 1.57628 1.15678 1.22202 1.88964 1.18789 0.90695 0.80012 0.97119 1.21801 1.35945 1.06759 0.93282 0.90655 1.25866 0.94861 0.96812 1.01440 1.70082 1.37957 1.15656 1.33431 0.85497 0.77275 0.78856 0.79748 1.20149 1.21563 1.17544 1.00732 0.72110 0.72237 0.72752 1.93516 1.67403 1.60363 1.77500 1.93518 1.42800 1.85743 1.77566 1.58823 1.31482 1.65387 1.29840 1.22138 0.87164 0.99240 0.92703 1.22951 0.95304 0.98283 0.98401 1.21149 0.96284 0.93627 0.95298 0.86745 1.20648 0.99908 0.95330 0.96715 1.21892 0.94776 0.98743 0.94232 1.22491 1.00820 0.92815 1.02274 1.23267 0.93207 1.01282 0.90001 1.67693 1.15355 1.24394 1.14985 1.22689 0.97198 0.87669 0.99467 1.21931 0.92826 0.94591 0.90744 0.92684 0.90503 0.90572 0.96335 0.96567 0.92615 0.91197 0.91491 0.87557 0.90121 0.82227 0.81632 0.80737 0.83577 0.91603 0.90630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.31 10.31 127.77 1.32 4.62 16 2 N -1.00 -42.02 3.23 -543.21 -1.75 -43.77 16 3 C 0.26 13.09 5.41 85.63 0.46 13.55 16 4 C -0.54 -27.45 9.38 25.60 0.24 -27.21 16 5 H 0.08 3.57 7.81 -2.91 -0.02 3.55 16 6 C 0.01 0.50 5.46 84.65 0.46 0.96 16 7 N -0.93 -53.52 13.29 21.45 0.28 -53.24 16 8 Si 0.96 40.38 29.54 68.60 2.03 42.40 16 9 H -0.28 -11.32 7.11 99.48 0.71 -10.61 16 10 H -0.29 -12.30 7.11 99.48 0.71 -11.59 16 11 H -0.25 -9.63 7.11 99.48 0.71 -8.93 16 12 S 2.81 114.82 6.31 -56.49 -0.36 114.46 16 13 O -1.00 -41.58 16.79 -128.00 -2.15 -43.73 16 14 O -1.01 -49.10 16.01 -128.00 -2.05 -51.15 16 15 N -1.01 -33.21 3.76 -506.45 -1.90 -35.12 16 16 C 0.11 3.41 7.10 86.85 0.62 4.03 16 17 C -0.11 -2.33 6.49 32.09 0.21 -2.12 16 18 C -0.04 -0.84 3.18 -10.25 -0.03 -0.87 16 19 H 0.11 1.86 8.00 -2.39 -0.02 1.84 16 20 C -0.12 -2.27 4.93 -19.77 -0.10 -2.36 16 21 C -0.07 -0.98 9.82 22.47 0.22 -0.76 16 22 C -0.16 -2.04 10.11 22.36 0.23 -1.81 16 23 C 0.08 1.28 11.18 84.69 0.95 2.23 16 24 N -0.52 -11.73 10.36 -195.84 -2.03 -13.75 16 25 C 0.09 1.89 9.36 84.67 0.79 2.69 16 26 C 0.12 3.14 6.51 86.73 0.56 3.71 16 27 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 28 H 0.08 2.52 8.07 -2.39 -0.02 2.50 16 29 H 0.08 2.16 7.79 -2.39 -0.02 2.14 16 30 H 0.02 1.00 8.11 -2.38 -0.02 0.98 16 31 H 0.02 0.93 6.91 -2.39 -0.02 0.92 16 32 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 33 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 34 H 0.07 2.21 7.78 -2.39 -0.02 2.19 16 35 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.08 1.64 6.79 -2.38 -0.02 1.62 16 37 H 0.16 1.41 8.03 -2.91 -0.02 1.38 16 38 H 0.17 0.95 8.06 -2.91 -0.02 0.93 16 39 H 0.18 1.84 8.06 -2.91 -0.02 1.82 16 40 H 0.15 3.28 7.29 -2.91 -0.02 3.25 16 41 H 0.07 1.69 7.14 -2.39 -0.02 1.68 16 42 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -71.47 360.58 -0.99 -72.46 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: 1.01 Total: 14.78 kcal Atomic # 6 Polarization: -9.28 SS G_CDS: 5.93 Total: -3.35 kcal Atomic # 7 Polarization: -140.48 SS G_CDS: -5.40 Total: -145.88 kcal Atomic # 8 Polarization: -90.68 SS G_CDS: -4.20 Total: -94.88 kcal Atomic # 14 Polarization: 40.38 SS G_CDS: 2.03 Total: 42.40 kcal Atomic # 16 Polarization: 114.82 SS G_CDS: -0.36 Total: 114.46 kcal Total: -71.47 -0.99 -72.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000520573855.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.290 kcal (2) G-P(sol) polarization free energy of solvation -71.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds