Wall clock time and date at job start Fri Apr 10 2020 14:47:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36079 * 127.10510 * 2 1 4 4 C 1.50699 * 126.27905 * 359.97438 * 3 2 1 5 5 C 1.50701 * 109.47307 * 90.00052 * 4 3 2 6 6 O 1.21294 * 119.99757 * 0.02562 * 5 4 3 7 7 N 1.34768 * 120.00322 * 180.02562 * 5 4 3 8 8 C 1.37097 * 120.00291 * 180.02562 * 7 5 4 9 9 H 1.07996 * 119.99655 * 20.43986 * 8 7 5 10 10 C 1.38952 * 119.99747 * 200.44621 * 8 7 5 11 11 N 1.31409 * 120.00524 * 13.47334 * 10 8 7 12 12 Si 1.86809 * 119.99530 * 193.47633 * 10 8 7 13 13 H 1.48500 * 109.46881 * 359.97438 * 12 10 8 14 14 H 1.48495 * 109.46842 * 119.99694 * 12 10 8 15 15 H 1.48495 * 109.47043 * 239.99956 * 12 10 8 16 16 C 1.46506 * 119.99921 * 0.02562 * 7 5 4 17 17 C 1.47203 * 109.47151 * 83.57566 * 16 7 5 18 18 N 5.61870 * 59.54416 * 356.59101 * 2 1 3 19 19 N 1.30615 * 107.44195 * 179.97438 * 3 2 1 20 20 N 1.28540 * 110.06251 * 0.02562 * 19 3 2 21 21 C 1.31449 * 109.71684 * 359.97438 * 20 19 3 22 22 C 1.47938 * 126.51045 * 180.02562 * 21 20 19 23 23 C 1.39515 * 120.13756 * 162.18145 * 22 21 20 24 24 C 1.37984 * 119.85555 * 179.74331 * 23 22 21 25 25 C 1.38355 * 120.13536 * 0.53635 * 24 23 22 26 26 C 1.38340 * 120.28284 * 359.73988 * 25 24 23 27 27 C 1.37974 * 120.14035 * 359.97438 * 26 25 24 28 28 H 1.08995 * 109.47339 * 264.33728 * 1 2 3 29 29 H 1.09004 * 109.46965 * 24.33551 * 1 2 3 30 30 H 1.08999 * 109.47709 * 144.33476 * 1 2 3 31 31 H 1.08995 * 109.47554 * 210.00315 * 4 3 2 32 32 H 1.09000 * 109.46864 * 330.00234 * 4 3 2 33 33 H 0.96995 * 119.99935 * 179.97438 * 11 10 8 34 34 H 1.08996 * 109.47172 * 203.58106 * 16 7 5 35 35 H 1.08996 * 109.47126 * 323.57785 * 16 7 5 36 36 H 1.08001 * 120.07636 * 359.97438 * 23 22 21 37 37 H 1.07992 * 119.92798 * 180.27354 * 24 23 22 38 38 H 1.08004 * 119.85161 * 179.71763 * 25 24 23 39 39 H 1.08005 * 119.92580 * 180.02562 * 26 25 24 40 40 H 1.08001 * 120.06980 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2859 1.0853 0.0000 4 6 1.8549 2.5293 -0.0005 5 6 1.7108 3.0111 1.4201 6 8 1.9363 2.2562 2.3423 7 7 1.3313 4.2807 1.6659 8 6 1.2007 4.7192 2.9583 9 1 1.6989 4.1938 3.7596 10 6 0.4272 5.8393 3.2370 11 7 -0.3856 6.3206 2.3235 12 14 0.5427 6.6611 4.9107 13 1 1.5228 5.9308 5.7541 14 1 0.9859 8.0682 4.7416 15 1 -0.7892 6.6370 5.5669 16 6 1.0584 5.1924 0.5520 17 6 -0.3206 4.9896 0.0785 18 7 -1.3830 4.8349 -0.2880 19 7 3.5159 0.6458 0.0006 20 7 3.5248 -0.6396 0.0004 21 6 2.2905 -1.0917 0.0002 22 6 1.8730 -2.5109 0.0005 23 6 0.5732 -2.8586 0.3696 24 6 0.1884 -4.1837 0.3626 25 6 1.0917 -5.1674 0.0015 26 6 2.3836 -4.8296 -0.3599 27 6 2.7790 -3.5077 -0.3627 28 1 -0.3634 -0.1014 1.0226 29 1 -0.3633 0.9364 -0.4235 30 1 -0.3634 -0.8349 -0.5992 31 1 2.6039 3.1319 -0.5143 32 1 0.8984 2.6228 -0.5147 33 1 -0.9258 7.1023 2.5183 34 1 1.1797 6.2223 0.8874 35 1 1.7552 4.9908 -0.2616 36 1 -0.1314 -2.0920 0.6564 37 1 -0.8187 -4.4537 0.6438 38 1 0.7869 -6.2036 0.0021 39 1 3.0839 -5.6022 -0.6412 40 1 3.7878 -3.2452 -0.6455 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000553849059.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:47:11 Heat of formation + Delta-G solvation = 116.775873 kcal Electronic energy + Delta-G solvation = -26532.539806 eV Core-core repulsion = 22735.833092 eV Total energy + Delta-G solvation = -3796.706714 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.128 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.78169 -39.20301 -38.91696 -35.96374 -35.02645 -34.50759 -32.99210 -32.00212 -31.17943 -30.66442 -28.00064 -27.63546 -27.30724 -24.73710 -23.59293 -22.76778 -21.08155 -20.84088 -19.26734 -18.03298 -17.37866 -16.93162 -16.58762 -16.44097 -15.85278 -15.77171 -15.04584 -14.69471 -14.41391 -14.22258 -13.94669 -13.76709 -13.44203 -13.40494 -13.15183 -13.06853 -12.79445 -12.69703 -12.26727 -11.86520 -11.66503 -11.55419 -11.38975 -11.32984 -11.23817 -11.21035 -10.68379 -10.46615 -10.41168 -10.16836 -10.03852 -9.81336 -9.38230 -9.18222 -8.83159 -8.24777 -8.15832 -6.58678 -4.14711 0.72307 1.17056 2.14071 2.50940 3.02159 3.05295 3.17461 3.23415 3.41713 3.62484 3.68270 3.84870 4.03166 4.14508 4.41494 4.54511 4.68137 4.71858 4.73505 4.80844 4.87144 5.00653 5.03176 5.12575 5.17652 5.27044 5.34290 5.50234 5.56151 5.60848 5.66926 5.84919 5.98907 6.06542 6.11791 6.25557 6.32804 6.39021 6.49177 6.68946 6.95512 7.36794 7.76754 8.16255 8.59073 8.87658 8.93260 9.05611 9.57033 10.46443 Molecular weight = 325.13amu Principal moments of inertia in cm(-1) A = 0.020079 B = 0.002975 C = 0.002942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.126494 B = 9409.158836 C = 9514.359526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.465 5.465 3 C 0.228 3.772 4 C -0.058 4.058 5 C 0.460 3.540 6 O -0.560 6.560 7 N -0.440 5.440 8 C -0.306 4.306 9 H 0.108 0.892 10 C 0.032 3.968 11 N -0.885 5.885 12 Si 0.932 3.068 13 H -0.267 1.267 14 H -0.278 1.278 15 H -0.282 1.282 16 C 0.216 3.784 17 C 0.248 3.752 18 N -0.475 5.475 19 N -0.284 5.284 20 N -0.276 5.276 21 C 0.200 3.800 22 C -0.004 4.004 23 C -0.117 4.117 24 C -0.117 4.117 25 C -0.114 4.114 26 C -0.118 4.118 27 C -0.079 4.079 28 H 0.088 0.912 29 H 0.094 0.906 30 H 0.093 0.907 31 H 0.122 0.878 32 H 0.097 0.903 33 H 0.274 0.726 34 H 0.137 0.863 35 H 0.084 0.916 36 H 0.129 0.871 37 H 0.127 0.873 38 H 0.124 0.876 39 H 0.129 0.871 40 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.688 -13.494 -8.121 15.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.155 5.155 3 C -0.039 4.039 4 C -0.101 4.101 5 C 0.247 3.753 6 O -0.442 6.442 7 N -0.160 5.160 8 C -0.433 4.433 9 H 0.126 0.874 10 C -0.171 4.171 11 N -0.525 5.525 12 Si 0.759 3.241 13 H -0.191 1.191 14 H -0.204 1.204 15 H -0.208 1.208 16 C 0.089 3.911 17 C -0.070 4.070 18 N -0.155 5.155 19 N -0.124 5.124 20 N -0.117 5.117 21 C -0.063 4.063 22 C -0.006 4.006 23 C -0.137 4.137 24 C -0.135 4.135 25 C -0.132 4.132 26 C -0.136 4.136 27 C -0.099 4.099 28 H 0.106 0.894 29 H 0.113 0.887 30 H 0.111 0.889 31 H 0.140 0.860 32 H 0.115 0.885 33 H 0.085 0.915 34 H 0.154 0.846 35 H 0.101 0.899 36 H 0.147 0.853 37 H 0.145 0.855 38 H 0.142 0.858 39 H 0.146 0.854 40 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 0.610 -13.867 -8.181 16.112 hybrid contribution -1.371 0.811 1.068 1.917 sum -0.761 -13.056 -7.114 14.888 Atomic orbital electron populations 1.22321 0.75694 1.05133 1.04480 1.46128 1.08690 1.06133 1.54521 1.24119 0.86847 0.90962 1.01928 1.20167 1.03519 0.87113 0.99283 1.19699 0.84332 0.82320 0.88976 1.90613 1.54029 1.53910 1.45613 1.43550 1.59074 1.07407 1.05993 1.19801 1.28879 1.10940 0.83703 0.87397 1.25319 0.94179 0.97823 0.99792 1.69747 1.23442 1.24572 1.34745 0.85751 0.78312 0.78863 0.81212 1.19077 1.20355 1.20827 1.18869 0.83862 0.99585 0.88809 1.29285 0.95459 0.91795 0.90495 1.80849 1.11823 1.10097 1.12770 1.74161 1.16823 1.02632 1.18812 1.74434 1.16267 1.03251 1.17743 1.22664 0.87382 0.88926 1.07370 1.17496 0.94317 0.86941 1.01881 1.21493 0.95207 0.97336 0.99651 1.21045 0.99966 0.92303 1.00179 1.21289 0.93721 0.99488 0.98729 1.21121 0.96419 0.95909 1.00179 1.21222 0.99590 0.91741 0.97321 0.89371 0.88746 0.88878 0.86032 0.88457 0.91535 0.84591 0.89865 0.85339 0.85500 0.85768 0.85351 0.84572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.81 9.29 59.84 0.56 1.37 16 2 N -0.46 -7.59 3.20 -118.25 -0.38 -7.97 16 3 C 0.23 4.21 6.54 -154.37 -1.01 3.20 16 4 C -0.06 -0.98 4.66 -29.03 -0.14 -1.11 16 5 C 0.46 9.98 7.55 -10.99 -0.08 9.90 16 6 O -0.56 -14.55 15.71 5.55 0.09 -14.46 16 7 N -0.44 -9.66 2.60 -117.93 -0.31 -9.96 16 8 C -0.31 -7.56 9.32 -14.93 -0.14 -7.70 16 9 H 0.11 2.86 7.38 -52.49 -0.39 2.48 16 10 C 0.03 0.75 5.05 -17.47 -0.09 0.66 16 11 N -0.89 -21.08 9.16 55.50 0.51 -20.57 16 12 Si 0.93 19.21 29.57 -169.99 -5.03 14.18 16 13 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 14 H -0.28 -5.58 7.11 56.52 0.40 -5.17 16 15 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 16 C 0.22 3.94 4.90 -6.82 -0.03 3.90 16 17 C 0.25 4.97 12.89 -20.81 -0.27 4.70 16 18 N -0.48 -10.26 18.53 42.10 0.78 -9.48 16 19 N -0.28 -5.80 12.19 32.92 0.40 -5.40 16 20 N -0.28 -5.36 12.03 32.51 0.39 -4.97 16 21 C 0.20 3.36 7.70 -154.23 -1.19 2.17 16 22 C 0.00 -0.05 5.87 -104.97 -0.62 -0.67 16 23 C -0.12 -1.31 8.74 -39.20 -0.34 -1.65 16 24 C -0.12 -1.06 10.03 -39.63 -0.40 -1.45 16 25 C -0.11 -0.95 10.04 -39.50 -0.40 -1.35 16 26 C -0.12 -1.08 10.03 -39.64 -0.40 -1.48 16 27 C -0.08 -0.92 9.70 -39.20 -0.38 -1.30 16 28 H 0.09 1.09 7.79 -51.93 -0.40 0.69 16 29 H 0.09 1.10 7.07 -51.93 -0.37 0.73 16 30 H 0.09 0.86 6.45 -51.93 -0.34 0.52 16 31 H 0.12 1.70 7.42 -51.93 -0.39 1.31 16 32 H 0.10 1.43 6.47 -51.93 -0.34 1.09 16 33 H 0.27 6.37 8.31 -40.82 -0.34 6.03 16 34 H 0.14 2.59 6.36 -51.93 -0.33 2.26 16 35 H 0.08 1.11 6.71 -51.93 -0.35 0.77 16 36 H 0.13 1.31 4.89 -52.49 -0.26 1.05 16 37 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 38 H 0.12 0.72 8.06 -52.48 -0.42 0.29 16 39 H 0.13 0.84 8.06 -52.48 -0.42 0.42 16 40 H 0.14 1.59 7.96 -52.49 -0.42 1.17 16 LS Contribution 347.62 15.07 5.24 5.24 Total: -1.00 -33.67 347.62 -7.20 -40.87 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: -3.97 Total: 3.31 kcal Atomic # 6 Polarization: 14.12 SS G_CDS: -4.92 Total: 9.21 kcal Atomic # 7 Polarization: -59.74 SS G_CDS: 1.39 Total: -58.34 kcal Atomic # 8 Polarization: -14.55 SS G_CDS: 0.09 Total: -14.46 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -5.03 Total: 14.18 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -33.67 -7.20 -40.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000553849059.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.645 kcal (2) G-P(sol) polarization free energy of solvation -33.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.869 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds