Wall clock time and date at job start Fri Apr 10 2020 14:48:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46498 * 119.99874 * 2 1 4 4 C 1.50709 * 109.47113 * 274.99977 * 3 2 1 5 5 H 1.08002 * 119.99589 * 359.97438 * 4 3 2 6 6 C 1.37875 * 120.00118 * 180.02562 * 4 3 2 7 7 N 1.31513 * 120.00192 * 359.97438 * 6 4 3 8 8 Si 1.86796 * 119.99969 * 180.02562 * 6 4 3 9 9 H 1.48502 * 109.47518 * 59.99146 * 8 6 4 10 10 H 1.48497 * 109.47319 * 179.97438 * 8 6 4 11 11 H 1.48508 * 109.46987 * 299.99449 * 8 6 4 12 12 S 1.65595 * 120.00275 * 179.97438 * 2 1 3 13 13 O 1.42105 * 106.40149 * 23.54018 * 12 2 1 14 14 O 1.42098 * 106.40317 * 156.45891 * 12 2 1 15 15 N 1.65606 * 107.22013 * 270.00200 * 12 2 1 16 16 C 1.47019 * 125.65005 * 90.02380 * 15 12 2 17 17 C 1.54318 * 107.26935 * 181.02535 * 16 15 12 18 18 C 1.55154 * 102.94679 * 22.19148 * 17 16 15 19 19 H 1.08996 * 111.00743 * 82.57158 * 18 17 16 20 20 C 1.50699 * 111.00609 * 206.38908 * 18 17 16 21 21 C 1.38653 * 120.79357 * 58.26117 * 20 18 17 22 22 C 1.38202 * 119.16260 * 179.75691 * 21 20 18 23 23 N 1.31869 * 120.76445 * 0.52948 * 22 21 20 24 24 C 1.31868 * 121.72697 * 359.74568 * 23 22 21 25 25 C 1.38202 * 120.76134 * 359.97438 * 24 23 22 26 26 C 1.47425 * 125.64301 * 269.71423 * 15 12 2 27 27 H 1.09009 * 109.46956 * 270.00331 * 1 2 3 28 28 H 1.08994 * 109.47112 * 30.00030 * 1 2 3 29 29 H 1.09001 * 109.47155 * 150.00738 * 1 2 3 30 30 H 1.08996 * 109.47764 * 34.99918 * 3 2 1 31 31 H 1.09003 * 109.47361 * 155.00291 * 3 2 1 32 32 H 0.96993 * 120.00108 * 180.02562 * 7 6 4 33 33 H 1.09003 * 109.87860 * 300.43785 * 16 15 12 34 34 H 1.08992 * 109.88310 * 61.60420 * 16 15 12 35 35 H 1.09003 * 110.72510 * 140.55665 * 17 16 15 36 36 H 1.08997 * 110.72133 * 263.64767 * 17 16 15 37 37 H 1.08003 * 120.40970 * 0.02562 * 21 20 18 38 38 H 1.08001 * 119.61457 * 180.29514 * 22 21 20 39 39 H 1.07997 * 119.61406 * 179.97438 * 24 23 22 40 40 H 1.08005 * 120.41500 * 180.02562 * 25 24 23 41 41 H 1.09002 * 110.36693 * 274.74147 * 26 15 12 42 42 H 1.09004 * 110.37033 * 37.07011 * 26 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.3414 1.7657 -1.4155 5 1 1.9288 1.1934 -2.2333 6 6 3.0005 2.9504 -1.6665 7 7 3.5033 3.6470 -0.6708 8 14 3.1783 3.5666 -3.4209 9 1 1.8317 3.7730 -4.0120 10 1 3.9208 4.8526 -3.4210 11 1 3.9233 2.5643 -4.2246 12 16 2.2930 -1.4341 0.0006 13 8 1.4114 -2.4067 -0.5434 14 8 3.5759 -1.1569 -0.5439 15 7 2.5381 -1.8579 1.5827 16 6 1.6306 -2.6751 2.4013 17 6 2.2559 -2.7846 3.8078 18 6 3.1988 -1.5539 3.8659 19 1 2.6487 -0.6525 4.1361 20 6 4.3406 -1.7926 4.8200 21 6 5.2042 -2.8624 4.6400 22 6 6.2432 -3.0467 5.5325 23 7 6.4113 -2.2260 6.5508 24 6 5.6064 -1.2018 6.7562 25 6 4.5492 -0.9513 5.9021 26 6 3.7056 -1.4837 2.4013 27 1 -0.3633 0.0001 1.0278 28 1 -0.3633 0.8899 -0.5138 29 1 -0.3633 -0.8901 -0.5137 30 1 1.6502 2.0043 0.5894 31 1 3.1858 1.1177 0.4343 32 1 3.9667 4.4805 -0.8474 33 1 0.6549 -2.1935 2.4659 34 1 1.5282 -3.6676 1.9628 35 1 1.4873 -2.7182 4.5779 36 1 2.8206 -3.7115 3.9077 37 1 5.0691 -3.5404 3.8102 38 1 6.9231 -3.8748 5.3964 39 1 5.7754 -0.5513 7.6016 40 1 3.8937 -0.1105 6.0754 41 1 4.5207 -2.1905 2.2453 42 1 4.0291 -0.4710 2.1604 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601457161.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:48:43 Heat of formation + Delta-G solvation = -34.755189 kcal Electronic energy + Delta-G solvation = -25953.874253 eV Core-core repulsion = 22253.747860 eV Total energy + Delta-G solvation = -3700.126394 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.125 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.53951 -38.38702 -36.67771 -35.51908 -35.20260 -33.62436 -32.46106 -31.39029 -30.15948 -28.75263 -27.79431 -25.10346 -24.13292 -23.47740 -22.41853 -22.09545 -20.64660 -18.63784 -17.54421 -17.28189 -16.70058 -16.47378 -16.27723 -15.73246 -15.55280 -15.08746 -14.54312 -14.09156 -13.94644 -13.84008 -13.63221 -13.45081 -13.28151 -13.19290 -12.79689 -12.30327 -12.18618 -11.96601 -11.83192 -11.69039 -11.60648 -11.42096 -11.25726 -11.19155 -11.09487 -10.84421 -10.73987 -10.53927 -10.06265 -9.80983 -9.66083 -9.61987 -9.32827 -8.91095 -8.46362 -8.09922 -6.09241 -4.13493 0.96419 1.01751 1.12577 3.32176 3.35761 3.39798 3.43476 3.60836 4.03078 4.21546 4.30191 4.42044 4.43474 4.49354 4.71700 4.90488 4.94755 4.95817 5.01966 5.20991 5.25173 5.30152 5.44841 5.50675 5.57177 5.62267 5.62881 5.75974 5.81347 5.85906 5.89551 5.96543 6.15432 6.23973 6.30930 6.40536 6.52287 6.59228 7.17429 7.35627 7.56214 7.80021 7.88061 8.16942 8.88551 9.51967 10.99314 Molecular weight = 325.12amu Principal moments of inertia in cm(-1) A = 0.014521 B = 0.003770 C = 0.003280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1927.785257 B = 7424.352788 C = 8535.578238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.995 5.995 3 C 0.258 3.742 4 C -0.531 4.531 5 H 0.060 0.940 6 C 0.063 3.937 7 N -0.896 5.896 8 Si 0.897 3.103 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.274 1.274 12 S 2.792 3.208 13 O -0.992 6.992 14 O -0.957 6.957 15 N -1.024 6.024 16 C 0.122 3.878 17 C -0.117 4.117 18 C -0.066 4.066 19 H 0.100 0.900 20 C -0.023 4.023 21 C -0.168 4.168 22 C 0.099 3.901 23 N -0.491 5.491 24 C 0.099 3.901 25 C -0.166 4.166 26 C 0.132 3.868 27 H 0.038 0.962 28 H 0.078 0.922 29 H 0.065 0.935 30 H 0.034 0.966 31 H 0.036 0.964 32 H 0.264 0.736 33 H 0.065 0.935 34 H 0.070 0.930 35 H 0.082 0.918 36 H 0.078 0.922 37 H 0.136 0.864 38 H 0.155 0.845 39 H 0.155 0.845 40 H 0.136 0.864 41 H 0.070 0.930 42 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.054 -11.702 14.697 18.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.838 5.838 3 C 0.136 3.864 4 C -0.570 4.570 5 H 0.078 0.922 6 C -0.139 4.139 7 N -0.535 5.535 8 Si 0.724 3.276 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.200 1.200 12 S 2.801 3.199 13 O -0.977 6.977 14 O -0.941 6.941 15 N -0.862 5.862 16 C -0.004 4.004 17 C -0.156 4.156 18 C -0.086 4.086 19 H 0.119 0.881 20 C -0.032 4.032 21 C -0.188 4.188 22 C -0.058 4.058 23 N -0.201 5.201 24 C -0.058 4.058 25 C -0.186 4.186 26 C 0.007 3.993 27 H 0.056 0.944 28 H 0.097 0.903 29 H 0.084 0.916 30 H 0.052 0.948 31 H 0.054 0.946 32 H 0.074 0.926 33 H 0.083 0.917 34 H 0.088 0.912 35 H 0.101 0.899 36 H 0.096 0.904 37 H 0.154 0.846 38 H 0.172 0.828 39 H 0.172 0.828 40 H 0.154 0.846 41 H 0.088 0.912 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -1.001 -12.137 14.445 18.893 hybrid contribution -0.704 0.935 -1.210 1.683 sum -1.704 -11.202 13.235 17.423 Atomic orbital electron populations 1.21344 0.80125 1.03466 1.00140 1.57698 1.14375 1.23391 1.88327 1.19043 0.90846 0.78775 0.97711 1.21453 1.36307 1.06409 0.92876 0.92224 1.24921 0.95013 0.96445 0.97532 1.69900 1.37211 1.15337 1.31021 0.86572 0.78335 0.78027 0.84626 1.20148 1.21120 1.19952 1.01699 0.73476 0.72756 0.71927 1.93519 1.67412 1.60511 1.76211 1.93634 1.40574 1.84893 1.74977 1.59475 1.29854 1.65691 1.31160 1.21635 0.92925 0.95361 0.90470 1.22725 0.98727 0.97634 0.96538 1.21487 0.93787 1.00002 0.93304 0.88126 1.20083 0.95031 0.93699 0.94389 1.22066 0.96466 0.99020 1.01255 1.22742 0.95678 0.97356 0.89988 1.67667 1.27875 1.04292 1.20220 1.22754 0.90624 0.94164 0.98249 1.22110 0.99950 1.00741 0.95809 1.22032 0.87861 1.01609 0.87845 0.94376 0.90344 0.91626 0.94763 0.94640 0.92602 0.91659 0.91170 0.89934 0.90352 0.84610 0.82815 0.82790 0.84588 0.91203 0.89791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.63 10.68 59.85 0.64 2.27 16 2 N -1.00 -20.54 3.23 -123.05 -0.40 -20.93 16 3 C 0.26 6.40 5.08 -5.19 -0.03 6.37 16 4 C -0.53 -14.87 9.38 -34.44 -0.32 -15.20 16 5 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 6 C 0.06 1.78 5.46 -17.82 -0.10 1.69 16 7 N -0.90 -25.89 13.29 55.43 0.74 -25.16 16 8 Si 0.90 21.76 29.54 -169.99 -5.02 16.74 16 9 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 10 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 12 S 2.79 55.60 6.31 -107.50 -0.68 54.92 16 13 O -0.99 -20.57 16.32 -57.17 -0.93 -21.51 16 14 O -0.96 -22.92 16.69 -57.17 -0.95 -23.87 16 15 N -1.02 -15.35 3.75 -111.29 -0.42 -15.76 16 16 C 0.12 1.38 6.99 -3.07 -0.02 1.36 16 17 C -0.12 -1.02 6.36 -24.90 -0.16 -1.18 16 18 C -0.07 -0.67 3.30 -89.50 -0.30 -0.97 16 19 H 0.10 0.99 8.03 -51.93 -0.42 0.57 16 20 C -0.02 -0.23 5.01 -104.32 -0.52 -0.76 16 21 C -0.17 -1.60 8.41 -39.44 -0.33 -1.93 16 22 C 0.10 0.97 11.18 -17.55 -0.20 0.77 16 23 N -0.49 -5.53 10.36 -13.26 -0.14 -5.66 16 24 C 0.10 0.96 11.18 -17.55 -0.20 0.76 16 25 C -0.17 -1.56 9.78 -39.44 -0.39 -1.94 16 26 C 0.13 1.79 6.40 -2.41 -0.02 1.77 16 27 H 0.04 0.53 8.14 -51.92 -0.42 0.11 16 28 H 0.08 1.36 8.07 -51.93 -0.42 0.94 16 29 H 0.07 1.06 7.02 -51.93 -0.36 0.69 16 30 H 0.03 0.86 8.11 -51.93 -0.42 0.44 16 31 H 0.04 0.93 7.61 -51.93 -0.40 0.53 16 32 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.08 0.61 7.17 -51.93 -0.37 0.24 16 37 H 0.14 1.10 7.16 -52.48 -0.38 0.73 16 38 H 0.15 1.12 8.06 -52.49 -0.42 0.70 16 39 H 0.15 1.10 8.06 -52.49 -0.42 0.68 16 40 H 0.14 1.02 8.04 -52.48 -0.42 0.60 16 41 H 0.07 0.88 6.84 -51.93 -0.35 0.53 16 42 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 LS Contribution 361.02 15.07 5.44 5.44 Total: -1.00 -34.66 361.02 -10.34 -45.00 By element: Atomic # 1 Polarization: 3.82 SS G_CDS: -6.05 Total: -2.23 kcal Atomic # 6 Polarization: -5.05 SS G_CDS: -1.93 Total: -6.98 kcal Atomic # 7 Polarization: -67.30 SS G_CDS: -0.22 Total: -67.51 kcal Atomic # 8 Polarization: -43.49 SS G_CDS: -1.89 Total: -45.38 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Atomic # 16 Polarization: 55.60 SS G_CDS: -0.68 Total: 54.92 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -34.66 -10.34 -45.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601457161.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.246 kcal (2) G-P(sol) polarization free energy of solvation -34.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds