Wall clock time and date at job start Fri Apr 10 2020 14:48:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46498 * 119.99874 * 2 1 4 4 C 1.50709 * 109.47113 * 274.99977 * 3 2 1 5 5 H 1.08002 * 119.99589 * 359.97438 * 4 3 2 6 6 C 1.37875 * 120.00118 * 180.02562 * 4 3 2 7 7 N 1.31513 * 120.00192 * 359.97438 * 6 4 3 8 8 Si 1.86796 * 119.99969 * 180.02562 * 6 4 3 9 9 H 1.48502 * 109.47518 * 59.99146 * 8 6 4 10 10 H 1.48497 * 109.47319 * 179.97438 * 8 6 4 11 11 H 1.48508 * 109.46987 * 299.99449 * 8 6 4 12 12 S 1.65595 * 120.00275 * 179.97438 * 2 1 3 13 13 O 1.42105 * 106.40149 * 23.54018 * 12 2 1 14 14 O 1.42098 * 106.40317 * 156.45891 * 12 2 1 15 15 N 1.65606 * 107.22013 * 270.00200 * 12 2 1 16 16 C 1.47019 * 125.65005 * 90.02380 * 15 12 2 17 17 C 1.54318 * 107.26935 * 181.02535 * 16 15 12 18 18 C 1.55154 * 102.94679 * 22.19148 * 17 16 15 19 19 H 1.08996 * 111.00743 * 82.57158 * 18 17 16 20 20 C 1.50699 * 111.00609 * 206.38908 * 18 17 16 21 21 C 1.38653 * 120.79357 * 58.26117 * 20 18 17 22 22 C 1.38202 * 119.16260 * 179.75691 * 21 20 18 23 23 N 1.31869 * 120.76445 * 0.52948 * 22 21 20 24 24 C 1.31868 * 121.72697 * 359.74568 * 23 22 21 25 25 C 1.38202 * 120.76134 * 359.97438 * 24 23 22 26 26 C 1.47425 * 125.64301 * 269.71423 * 15 12 2 27 27 H 1.09009 * 109.46956 * 270.00331 * 1 2 3 28 28 H 1.08994 * 109.47112 * 30.00030 * 1 2 3 29 29 H 1.09001 * 109.47155 * 150.00738 * 1 2 3 30 30 H 1.08996 * 109.47764 * 34.99918 * 3 2 1 31 31 H 1.09003 * 109.47361 * 155.00291 * 3 2 1 32 32 H 0.96993 * 120.00108 * 180.02562 * 7 6 4 33 33 H 1.09003 * 109.87860 * 300.43785 * 16 15 12 34 34 H 1.08992 * 109.88310 * 61.60420 * 16 15 12 35 35 H 1.09003 * 110.72510 * 140.55665 * 17 16 15 36 36 H 1.08997 * 110.72133 * 263.64767 * 17 16 15 37 37 H 1.08003 * 120.40970 * 0.02562 * 21 20 18 38 38 H 1.08001 * 119.61457 * 180.29514 * 22 21 20 39 39 H 1.07997 * 119.61406 * 179.97438 * 24 23 22 40 40 H 1.08005 * 120.41500 * 180.02562 * 25 24 23 41 41 H 1.09002 * 110.36693 * 274.74147 * 26 15 12 42 42 H 1.09004 * 110.37033 * 37.07011 * 26 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.3414 1.7657 -1.4155 5 1 1.9288 1.1934 -2.2333 6 6 3.0005 2.9504 -1.6665 7 7 3.5033 3.6470 -0.6708 8 14 3.1783 3.5666 -3.4209 9 1 1.8317 3.7730 -4.0120 10 1 3.9208 4.8526 -3.4210 11 1 3.9233 2.5643 -4.2246 12 16 2.2930 -1.4341 0.0006 13 8 1.4114 -2.4067 -0.5434 14 8 3.5759 -1.1569 -0.5439 15 7 2.5381 -1.8579 1.5827 16 6 1.6306 -2.6751 2.4013 17 6 2.2559 -2.7846 3.8078 18 6 3.1988 -1.5539 3.8659 19 1 2.6487 -0.6525 4.1361 20 6 4.3406 -1.7926 4.8200 21 6 5.2042 -2.8624 4.6400 22 6 6.2432 -3.0467 5.5325 23 7 6.4113 -2.2260 6.5508 24 6 5.6064 -1.2018 6.7562 25 6 4.5492 -0.9513 5.9021 26 6 3.7056 -1.4837 2.4013 27 1 -0.3633 0.0001 1.0278 28 1 -0.3633 0.8899 -0.5138 29 1 -0.3633 -0.8901 -0.5137 30 1 1.6502 2.0043 0.5894 31 1 3.1858 1.1177 0.4343 32 1 3.9667 4.4805 -0.8474 33 1 0.6549 -2.1935 2.4659 34 1 1.5282 -3.6676 1.9628 35 1 1.4873 -2.7182 4.5779 36 1 2.8206 -3.7115 3.9077 37 1 5.0691 -3.5404 3.8102 38 1 6.9231 -3.8748 5.3964 39 1 5.7754 -0.5513 7.6016 40 1 3.8937 -0.1105 6.0754 41 1 4.5207 -2.1905 2.2453 42 1 4.0291 -0.4710 2.1604 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601457161.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:48:41 Heat of formation + Delta-G solvation = -59.079523 kcal Electronic energy + Delta-G solvation = -25954.929036 eV Core-core repulsion = 22253.747860 eV Total energy + Delta-G solvation = -3701.181176 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.125 amu Computer time = 2.05 seconds Orbital eigenvalues (eV) -41.29417 -39.31737 -38.35598 -37.24403 -36.90524 -34.53087 -34.49729 -32.09239 -31.07435 -29.77910 -29.57887 -26.81102 -25.00192 -24.31171 -24.14473 -23.14334 -21.45825 -20.02069 -19.07731 -18.59589 -18.29301 -17.88541 -17.32823 -17.04263 -16.46874 -16.37417 -16.05891 -15.31215 -15.11301 -14.84704 -14.71694 -14.61004 -14.38296 -14.34993 -14.09746 -13.98110 -13.61823 -13.37415 -13.23994 -13.07221 -12.96574 -12.79598 -12.72065 -12.52263 -12.49378 -12.40255 -12.28838 -11.99192 -11.79661 -11.60709 -10.62415 -10.44072 -10.37317 -10.10467 -9.99842 -9.79570 -8.22790 -6.34979 -0.45139 0.25962 0.30554 1.37836 1.41229 1.48386 1.99046 2.37938 2.54549 2.86559 3.08062 3.18411 3.45821 3.63795 3.66106 3.78074 3.98348 4.07639 4.20757 4.25707 4.27152 4.31289 4.43592 4.54473 4.68440 4.76610 4.78035 4.79986 4.84652 4.96444 4.99555 5.03496 5.04352 5.10067 5.14946 5.23097 5.34196 5.49046 5.50020 5.67362 5.83108 5.91427 6.07818 6.72670 7.08180 7.34053 8.84469 Molecular weight = 325.12amu Principal moments of inertia in cm(-1) A = 0.014521 B = 0.003770 C = 0.003280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1927.785257 B = 7424.352788 C = 8535.578238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -1.004 6.004 3 C 0.275 3.725 4 C -0.554 4.554 5 H 0.050 0.950 6 C 0.015 3.985 7 N -0.922 5.922 8 Si 0.955 3.045 9 H -0.263 1.263 10 H -0.275 1.275 11 H -0.278 1.278 12 S 2.807 3.193 13 O -1.003 7.003 14 O -1.006 7.006 15 N -1.019 6.019 16 C 0.110 3.890 17 C -0.105 4.105 18 C -0.054 4.054 19 H 0.106 0.894 20 C -0.033 4.033 21 C -0.172 4.172 22 C 0.089 3.911 23 N -0.517 5.517 24 C 0.089 3.911 25 C -0.169 4.169 26 C 0.124 3.876 27 H 0.074 0.926 28 H 0.070 0.930 29 H 0.074 0.926 30 H 0.029 0.971 31 H 0.014 0.986 32 H 0.268 0.732 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.110 0.890 36 H 0.090 0.910 37 H 0.148 0.852 38 H 0.173 0.827 39 H 0.175 0.825 40 H 0.154 0.846 41 H 0.076 0.924 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.073 -12.361 15.759 20.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.845 5.845 3 C 0.151 3.849 4 C -0.593 4.593 5 H 0.069 0.931 6 C -0.185 4.185 7 N -0.561 5.561 8 Si 0.779 3.221 9 H -0.188 1.188 10 H -0.200 1.200 11 H -0.204 1.204 12 S 2.817 3.183 13 O -0.987 6.987 14 O -0.990 6.990 15 N -0.861 5.861 16 C -0.015 4.015 17 C -0.143 4.143 18 C -0.074 4.074 19 H 0.124 0.876 20 C -0.041 4.041 21 C -0.191 4.191 22 C -0.067 4.067 23 N -0.227 5.227 24 C -0.067 4.067 25 C -0.188 4.188 26 C -0.002 4.002 27 H 0.092 0.908 28 H 0.089 0.911 29 H 0.093 0.907 30 H 0.047 0.953 31 H 0.032 0.968 32 H 0.077 0.923 33 H 0.097 0.903 34 H 0.094 0.906 35 H 0.128 0.872 36 H 0.109 0.891 37 H 0.166 0.834 38 H 0.190 0.810 39 H 0.192 0.808 40 H 0.171 0.829 41 H 0.094 0.906 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.055 -12.807 15.501 20.212 hybrid contribution -0.387 1.075 -1.467 1.860 sum -2.442 -11.732 14.033 18.454 Atomic orbital electron populations 1.21572 0.77980 1.03520 1.02538 1.57604 1.15850 1.22027 1.89051 1.18581 0.90219 0.80229 0.95846 1.21813 1.36547 1.06783 0.94178 0.93124 1.25718 0.94669 0.96677 1.01448 1.69986 1.37648 1.15708 1.32804 0.85666 0.78875 0.77616 0.79933 1.18753 1.19969 1.20377 1.00915 0.72262 0.72355 0.72762 1.93493 1.67422 1.60458 1.77319 1.93563 1.42902 1.85509 1.77066 1.59012 1.31135 1.65792 1.30123 1.22021 0.93027 0.95085 0.91343 1.22738 0.98968 0.97298 0.95343 1.21385 0.94145 1.01184 0.90720 0.87590 1.20135 0.95183 0.94176 0.94630 1.22231 0.96269 0.99153 1.01480 1.23104 0.96144 0.97753 0.89732 1.67690 1.28752 1.05146 1.21078 1.23146 0.90484 0.94140 0.98978 1.22330 1.00047 1.00991 0.95479 1.22193 0.87723 1.00286 0.89969 0.90785 0.91109 0.90750 0.95322 0.96800 0.92303 0.90269 0.90565 0.87205 0.89117 0.83425 0.80967 0.80803 0.82880 0.90604 0.92428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.93 10.68 127.77 1.36 4.29 16 2 N -1.00 -41.57 3.23 -543.22 -1.75 -43.32 16 3 C 0.27 13.94 5.08 85.64 0.43 14.38 16 4 C -0.55 -31.61 9.38 25.60 0.24 -31.37 16 5 H 0.05 2.90 7.81 -2.91 -0.02 2.88 16 6 C 0.01 0.84 5.46 84.65 0.46 1.30 16 7 N -0.92 -53.89 13.29 21.45 0.28 -53.60 16 8 Si 0.95 44.68 29.54 68.60 2.03 46.71 16 9 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 10 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 11 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 12 S 2.81 112.49 6.31 -56.49 -0.36 112.13 16 13 O -1.00 -41.05 16.32 -128.00 -2.09 -43.14 16 14 O -1.01 -49.85 16.69 -128.00 -2.14 -51.98 16 15 N -1.02 -29.75 3.75 -506.02 -1.90 -31.65 16 16 C 0.11 2.21 6.99 86.73 0.61 2.82 16 17 C -0.10 -1.48 6.36 31.78 0.20 -1.28 16 18 C -0.05 -1.00 3.30 -10.07 -0.03 -1.03 16 19 H 0.11 1.85 8.03 -2.39 -0.02 1.83 16 20 C -0.03 -0.59 5.01 -19.67 -0.10 -0.69 16 21 C -0.17 -2.99 8.41 22.36 0.19 -2.80 16 22 C 0.09 1.62 11.18 84.68 0.95 2.57 16 23 N -0.52 -11.05 10.36 -195.85 -2.03 -13.08 16 24 C 0.09 1.60 11.18 84.68 0.95 2.55 16 25 C -0.17 -2.86 9.78 22.36 0.22 -2.64 16 26 C 0.12 3.30 6.40 86.93 0.56 3.86 16 27 H 0.07 1.88 8.14 -2.38 -0.02 1.86 16 28 H 0.07 2.41 8.07 -2.39 -0.02 2.40 16 29 H 0.07 2.30 7.02 -2.39 -0.02 2.28 16 30 H 0.03 1.47 8.11 -2.39 -0.02 1.45 16 31 H 0.01 0.76 7.61 -2.39 -0.02 0.75 16 32 H 0.27 14.75 8.31 -92.71 -0.77 13.98 16 33 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.09 1.10 7.17 -2.39 -0.02 1.08 16 37 H 0.15 2.12 7.16 -2.91 -0.02 2.10 16 38 H 0.17 2.28 8.06 -2.91 -0.02 2.26 16 39 H 0.17 2.21 8.06 -2.91 -0.02 2.19 16 40 H 0.15 1.97 8.04 -2.91 -0.02 1.95 16 41 H 0.08 1.90 6.84 -2.39 -0.02 1.88 16 42 H 0.06 1.83 8.14 -2.38 -0.02 1.81 16 Total: -1.00 -75.49 361.02 -0.90 -76.39 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: 1.01 Total: 9.60 kcal Atomic # 6 Polarization: -14.09 SS G_CDS: 6.03 Total: -8.05 kcal Atomic # 7 Polarization: -136.26 SS G_CDS: -5.40 Total: -141.66 kcal Atomic # 8 Polarization: -90.90 SS G_CDS: -4.23 Total: -95.12 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Atomic # 16 Polarization: 112.49 SS G_CDS: -0.36 Total: 112.13 kcal Total: -75.49 -0.90 -76.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601457161.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.314 kcal (2) G-P(sol) polarization free energy of solvation -75.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.06 seconds