Wall clock time and date at job start Fri Apr 10 2020 14:48:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46507 * 120.00328 * 2 1 4 4 C 1.50698 * 109.47055 * 275.00444 * 3 2 1 5 5 H 1.07997 * 119.99871 * 359.97438 * 4 3 2 6 6 C 1.37881 * 120.00046 * 179.97438 * 4 3 2 7 7 N 1.31510 * 119.99910 * 179.97438 * 6 4 3 8 8 Si 1.86801 * 119.99656 * 0.02562 * 6 4 3 9 9 H 1.48493 * 109.47048 * 90.00016 * 8 6 4 10 10 H 1.48501 * 109.46653 * 210.00150 * 8 6 4 11 11 H 1.48498 * 109.47082 * 329.99415 * 8 6 4 12 12 S 1.65600 * 119.99918 * 180.02562 * 2 1 3 13 13 O 1.42110 * 106.40149 * 156.45892 * 12 2 1 14 14 O 1.42101 * 106.40200 * 23.53822 * 12 2 1 15 15 N 1.65600 * 107.22066 * 269.99720 * 12 2 1 16 16 C 1.46499 * 119.99669 * 64.99759 * 15 12 2 17 17 C 1.53003 * 109.46797 * 164.58630 * 16 15 12 18 18 C 1.50700 * 115.54843 * 294.89816 * 17 16 15 19 19 C 1.38228 * 119.61766 * 284.61273 * 18 17 16 20 20 C 1.38625 * 119.16132 * 180.02562 * 19 18 17 21 21 C 1.38675 * 118.42452 * 0.02562 * 20 19 18 22 22 C 1.38181 * 119.15756 * 0.27492 * 21 20 19 23 23 N 1.31848 * 119.62180 * 104.64118 * 18 17 16 24 24 C 1.53002 * 117.50200 * 80.57094 * 17 16 15 25 25 C 1.53002 * 117.49975 * 149.22988 * 17 16 15 26 26 H 1.09000 * 109.46847 * 269.99912 * 1 2 3 27 27 H 1.08999 * 109.47137 * 29.99254 * 1 2 3 28 28 H 1.08998 * 109.47369 * 150.00112 * 1 2 3 29 29 H 1.09000 * 109.46639 * 35.00010 * 3 2 1 30 30 H 1.08997 * 109.46912 * 155.00003 * 3 2 1 31 31 H 0.96996 * 120.00011 * 179.97438 * 7 6 4 32 32 H 0.96999 * 120.00334 * 245.00160 * 15 12 2 33 33 H 1.09000 * 109.47346 * 44.58679 * 16 15 12 34 34 H 1.08998 * 109.47554 * 284.58251 * 16 15 12 35 35 H 1.07999 * 120.42412 * 0.05086 * 19 18 17 36 36 H 1.08005 * 120.79032 * 180.02562 * 20 19 18 37 37 H 1.08002 * 120.42217 * 179.97438 * 21 20 19 38 38 H 1.07996 * 119.61747 * 179.69841 * 22 21 20 39 39 H 1.09001 * 117.49458 * 215.00481 * 24 17 16 40 40 H 1.08994 * 117.49363 * 0.02562 * 24 17 16 41 41 H 1.09001 * 117.49970 * 359.97438 * 25 17 16 42 42 H 1.08999 * 117.50181 * 144.97007 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1976 1.2688 0.0000 4 6 2.3414 1.7657 -1.4154 5 1 1.9288 1.1935 -2.2331 6 6 2.9998 2.9509 -1.6663 7 7 3.1257 3.3843 -2.9016 8 14 3.7140 3.9402 -0.2519 9 1 5.1112 3.5053 0.0004 10 1 3.7000 5.3835 -0.6007 11 1 2.8983 3.7181 0.9690 12 16 2.2929 -1.4341 -0.0006 13 8 3.5759 -1.1565 -0.5450 14 8 1.4112 -2.4063 -0.5455 15 7 2.5381 -1.8594 1.5809 16 6 1.3946 -2.1789 2.4392 17 6 1.8866 -2.8958 3.6982 18 6 2.5102 -4.2492 3.4737 19 6 1.7023 -5.3360 3.1961 20 6 2.2859 -6.5767 2.9918 21 6 3.6664 -6.6787 3.0751 22 6 4.4087 -5.5492 3.3627 23 7 3.8199 -4.3832 3.5448 24 6 2.4581 -2.0328 4.8249 25 6 1.0858 -2.6917 4.9858 26 1 -0.3633 0.0000 1.0277 27 1 -0.3633 0.8900 -0.5137 28 1 -0.3634 -0.8900 -0.5138 29 1 1.6502 2.0043 0.5895 30 1 3.1858 1.1176 0.4343 31 1 3.5885 4.2183 -3.0781 32 1 3.4388 -1.8969 1.9391 33 1 0.7043 -2.8264 1.8986 34 1 0.8838 -1.2584 2.7215 35 1 0.6301 -5.2200 3.1388 36 1 1.6798 -7.4435 2.7728 37 1 4.1548 -7.6297 2.9220 38 1 5.4839 -5.6211 3.4342 39 1 3.2851 -2.4440 5.4037 40 1 2.4831 -0.9543 4.6694 41 1 0.2088 -2.0464 4.9362 42 1 1.0097 -3.5365 5.6704 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000613983523.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:48:52 Heat of formation + Delta-G solvation = -6.827366 kcal Electronic energy + Delta-G solvation = -25934.919027 eV Core-core repulsion = 22236.003674 eV Total energy + Delta-G solvation = -3698.915352 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.125 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -40.63998 -38.03282 -36.61652 -35.61737 -35.17649 -33.99203 -32.62730 -32.36438 -31.19333 -28.38018 -26.58825 -25.14058 -24.05580 -23.82637 -22.39218 -21.89652 -20.18874 -18.87641 -17.48799 -17.15102 -16.94315 -16.56086 -16.30125 -16.22820 -15.55937 -15.17153 -14.73197 -14.55663 -14.15808 -13.76991 -13.66992 -13.39272 -13.33490 -13.05517 -12.64877 -12.50721 -12.34591 -11.95011 -11.72886 -11.69763 -11.48394 -11.35864 -11.32687 -11.19897 -10.72422 -10.65510 -10.46050 -10.42056 -10.22726 -10.06225 -9.60939 -9.54210 -9.34837 -9.12906 -8.57680 -8.11373 -6.06514 -4.05826 0.88466 1.08147 1.17792 3.24596 3.29623 3.34156 3.36372 3.56327 3.63797 3.95219 4.13569 4.38754 4.40053 4.46267 4.64672 4.72329 4.79338 4.89991 4.99132 5.02961 5.22207 5.24519 5.30503 5.40255 5.47502 5.52916 5.59897 5.70194 5.74763 5.89208 5.90825 5.94427 5.99159 6.02240 6.23409 6.46085 6.48303 6.73488 7.05165 7.19054 7.45689 7.59841 7.81912 8.50722 8.98269 9.52480 11.07117 Molecular weight = 325.12amu Principal moments of inertia in cm(-1) A = 0.018738 B = 0.003634 C = 0.003529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.955077 B = 7702.569181 C = 7932.966833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.991 5.991 3 C 0.228 3.772 4 C -0.533 4.533 5 H 0.077 0.923 6 C 0.073 3.927 7 N -0.895 5.895 8 Si 0.873 3.127 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.265 1.265 12 S 2.783 3.217 13 O -0.961 6.961 14 O -0.995 6.995 15 N -1.131 6.131 16 C 0.166 3.834 17 C -0.097 4.097 18 C 0.171 3.829 19 C -0.160 4.160 20 C -0.075 4.075 21 C -0.179 4.179 22 C 0.100 3.900 23 N -0.475 5.475 24 C -0.147 4.147 25 C -0.155 4.155 26 H 0.039 0.961 27 H 0.080 0.920 28 H 0.069 0.931 29 H 0.033 0.967 30 H 0.029 0.971 31 H 0.265 0.735 32 H 0.417 0.583 33 H 0.080 0.920 34 H 0.072 0.928 35 H 0.136 0.864 36 H 0.134 0.866 37 H 0.134 0.866 38 H 0.156 0.844 39 H 0.101 0.899 40 H 0.103 0.897 41 H 0.105 0.895 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.647 -17.067 18.802 25.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.833 5.833 3 C 0.105 3.895 4 C -0.572 4.572 5 H 0.095 0.905 6 C -0.130 4.130 7 N -0.534 5.534 8 Si 0.700 3.300 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.189 1.189 12 S 2.790 3.210 13 O -0.945 6.945 14 O -0.978 6.978 15 N -0.890 5.890 16 C 0.039 3.961 17 C -0.099 4.099 18 C 0.033 3.967 19 C -0.180 4.180 20 C -0.101 4.101 21 C -0.198 4.198 22 C -0.057 4.057 23 N -0.183 5.183 24 C -0.184 4.184 25 C -0.193 4.193 26 H 0.057 0.943 27 H 0.099 0.901 28 H 0.087 0.913 29 H 0.051 0.949 30 H 0.047 0.953 31 H 0.075 0.925 32 H 0.250 0.750 33 H 0.098 0.902 34 H 0.090 0.910 35 H 0.154 0.846 36 H 0.152 0.848 37 H 0.152 0.848 38 H 0.173 0.827 39 H 0.119 0.881 40 H 0.122 0.878 41 H 0.124 0.876 42 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -3.973 -16.665 18.012 24.858 hybrid contribution 0.255 -0.018 0.773 0.814 sum -3.718 -16.683 18.784 25.396 Atomic orbital electron populations 1.21403 0.79805 1.03980 1.00143 1.57384 1.14406 1.22563 1.88922 1.19427 0.90863 0.80702 0.98552 1.21390 1.36870 1.07006 0.91899 0.90459 1.24876 0.95354 0.97217 0.95561 1.69896 1.42597 1.21992 1.18878 0.86905 0.80447 0.79651 0.83020 1.19779 1.20982 1.18945 1.01928 0.73386 0.72928 0.72761 1.93652 1.40584 1.84763 1.75508 1.93523 1.67628 1.59866 1.76772 1.56200 1.14798 1.85934 1.32091 1.20636 0.87888 0.98437 0.89140 1.20112 1.05200 0.93335 0.91239 1.20102 0.88993 0.93121 0.94466 1.21911 1.01656 0.93123 1.01293 1.21588 0.95073 0.97702 0.95729 1.22156 0.94925 1.00534 1.02223 1.22774 1.00507 0.87617 0.94811 1.67408 1.11356 1.26463 1.13068 1.23014 0.96635 0.99173 0.99623 1.23109 0.96098 1.03382 0.96743 0.94269 0.90122 0.91283 0.94884 0.95286 0.92533 0.74968 0.90166 0.90978 0.84639 0.84769 0.84842 0.82675 0.88066 0.87842 0.87618 0.88504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.53 10.68 59.84 0.64 2.17 16 2 N -0.99 -20.06 3.23 -123.05 -0.40 -20.46 16 3 C 0.23 5.40 4.15 -5.19 -0.02 5.38 16 4 C -0.53 -15.37 9.94 -34.44 -0.34 -15.71 16 5 H 0.08 2.45 8.06 -52.49 -0.42 2.03 16 6 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 7 N -0.90 -27.80 13.96 55.43 0.77 -27.03 16 8 Si 0.87 21.25 27.47 -169.99 -4.67 16.58 16 9 H -0.27 -6.62 7.11 56.52 0.40 -6.21 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.26 -5.95 6.54 56.52 0.37 -5.58 16 12 S 2.78 55.62 6.10 -107.50 -0.66 54.97 16 13 O -0.96 -23.52 17.11 -57.17 -0.98 -24.50 16 14 O -0.99 -20.91 16.20 -57.17 -0.93 -21.83 16 15 N -1.13 -17.13 5.96 -10.61 -0.06 -17.19 16 16 C 0.17 1.98 6.08 -4.04 -0.02 1.96 16 17 C -0.10 -1.00 1.75 -155.66 -0.27 -1.28 16 18 C 0.17 1.97 5.77 -82.59 -0.48 1.49 16 19 C -0.16 -1.60 9.78 -39.44 -0.39 -1.98 16 20 C -0.07 -0.65 10.18 -39.28 -0.40 -1.05 16 21 C -0.18 -1.53 10.11 -39.44 -0.40 -1.93 16 22 C 0.10 1.01 11.18 -17.55 -0.20 0.81 16 23 N -0.47 -5.81 10.07 -9.47 -0.10 -5.90 16 24 C -0.15 -1.38 9.80 -26.69 -0.26 -1.64 16 25 C -0.15 -1.20 9.93 -26.69 -0.26 -1.46 16 26 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.08 1.38 8.07 -51.93 -0.42 0.96 16 28 H 0.07 1.10 7.02 -51.93 -0.36 0.73 16 29 H 0.03 0.74 7.17 -51.93 -0.37 0.36 16 30 H 0.03 0.69 7.04 -51.93 -0.37 0.33 16 31 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 32 H 0.42 6.14 8.66 -34.47 -0.30 5.84 16 33 H 0.08 0.95 7.74 -51.93 -0.40 0.55 16 34 H 0.07 0.74 8.09 -51.93 -0.42 0.32 16 35 H 0.14 1.10 8.06 -52.49 -0.42 0.67 16 36 H 0.13 0.81 8.06 -52.48 -0.42 0.39 16 37 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 38 H 0.16 1.18 8.06 -52.49 -0.42 0.76 16 39 H 0.10 0.99 8.13 -51.93 -0.42 0.57 16 40 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 368.74 15.07 5.56 5.56 Total: -1.00 -36.97 368.74 -9.99 -46.96 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: -6.04 Total: 4.09 kcal Atomic # 6 Polarization: -8.73 SS G_CDS: -2.50 Total: -11.23 kcal Atomic # 7 Polarization: -70.80 SS G_CDS: 0.22 Total: -70.58 kcal Atomic # 8 Polarization: -44.43 SS G_CDS: -1.90 Total: -46.33 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -4.67 Total: 16.58 kcal Atomic # 16 Polarization: 55.62 SS G_CDS: -0.66 Total: 54.97 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -36.97 -9.99 -46.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613983523.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.133 kcal (2) G-P(sol) polarization free energy of solvation -36.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.70 seconds