Wall clock time and date at job start Fri Apr 10 2020 14:48:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46507 * 120.00328 * 2 1 4 4 C 1.50698 * 109.47055 * 275.00444 * 3 2 1 5 5 H 1.07997 * 119.99871 * 359.97438 * 4 3 2 6 6 C 1.37881 * 120.00046 * 179.97438 * 4 3 2 7 7 N 1.31510 * 119.99910 * 179.97438 * 6 4 3 8 8 Si 1.86801 * 119.99656 * 0.02562 * 6 4 3 9 9 H 1.48493 * 109.47048 * 90.00016 * 8 6 4 10 10 H 1.48501 * 109.46653 * 210.00150 * 8 6 4 11 11 H 1.48498 * 109.47082 * 329.99415 * 8 6 4 12 12 S 1.65600 * 119.99918 * 180.02562 * 2 1 3 13 13 O 1.42110 * 106.40149 * 156.45892 * 12 2 1 14 14 O 1.42101 * 106.40200 * 23.53822 * 12 2 1 15 15 N 1.65600 * 107.22066 * 269.99720 * 12 2 1 16 16 C 1.46499 * 119.99669 * 64.99759 * 15 12 2 17 17 C 1.53003 * 109.46797 * 164.58630 * 16 15 12 18 18 C 1.50700 * 115.54843 * 294.89816 * 17 16 15 19 19 C 1.38228 * 119.61766 * 284.61273 * 18 17 16 20 20 C 1.38625 * 119.16132 * 180.02562 * 19 18 17 21 21 C 1.38675 * 118.42452 * 0.02562 * 20 19 18 22 22 C 1.38181 * 119.15756 * 0.27492 * 21 20 19 23 23 N 1.31848 * 119.62180 * 104.64118 * 18 17 16 24 24 C 1.53002 * 117.50200 * 80.57094 * 17 16 15 25 25 C 1.53002 * 117.49975 * 149.22988 * 17 16 15 26 26 H 1.09000 * 109.46847 * 269.99912 * 1 2 3 27 27 H 1.08999 * 109.47137 * 29.99254 * 1 2 3 28 28 H 1.08998 * 109.47369 * 150.00112 * 1 2 3 29 29 H 1.09000 * 109.46639 * 35.00010 * 3 2 1 30 30 H 1.08997 * 109.46912 * 155.00003 * 3 2 1 31 31 H 0.96996 * 120.00011 * 179.97438 * 7 6 4 32 32 H 0.96999 * 120.00334 * 245.00160 * 15 12 2 33 33 H 1.09000 * 109.47346 * 44.58679 * 16 15 12 34 34 H 1.08998 * 109.47554 * 284.58251 * 16 15 12 35 35 H 1.07999 * 120.42412 * 0.05086 * 19 18 17 36 36 H 1.08005 * 120.79032 * 180.02562 * 20 19 18 37 37 H 1.08002 * 120.42217 * 179.97438 * 21 20 19 38 38 H 1.07996 * 119.61747 * 179.69841 * 22 21 20 39 39 H 1.09001 * 117.49458 * 215.00481 * 24 17 16 40 40 H 1.08994 * 117.49363 * 0.02562 * 24 17 16 41 41 H 1.09001 * 117.49970 * 359.97438 * 25 17 16 42 42 H 1.08999 * 117.50181 * 144.97007 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1976 1.2688 0.0000 4 6 2.3414 1.7657 -1.4154 5 1 1.9288 1.1935 -2.2331 6 6 2.9998 2.9509 -1.6663 7 7 3.1257 3.3843 -2.9016 8 14 3.7140 3.9402 -0.2519 9 1 5.1112 3.5053 0.0004 10 1 3.7000 5.3835 -0.6007 11 1 2.8983 3.7181 0.9690 12 16 2.2929 -1.4341 -0.0006 13 8 3.5759 -1.1565 -0.5450 14 8 1.4112 -2.4063 -0.5455 15 7 2.5381 -1.8594 1.5809 16 6 1.3946 -2.1789 2.4392 17 6 1.8866 -2.8958 3.6982 18 6 2.5102 -4.2492 3.4737 19 6 1.7023 -5.3360 3.1961 20 6 2.2859 -6.5767 2.9918 21 6 3.6664 -6.6787 3.0751 22 6 4.4087 -5.5492 3.3627 23 7 3.8199 -4.3832 3.5448 24 6 2.4581 -2.0328 4.8249 25 6 1.0858 -2.6917 4.9858 26 1 -0.3633 0.0000 1.0277 27 1 -0.3633 0.8900 -0.5137 28 1 -0.3634 -0.8900 -0.5138 29 1 1.6502 2.0043 0.5895 30 1 3.1858 1.1176 0.4343 31 1 3.5885 4.2183 -3.0781 32 1 3.4388 -1.8969 1.9391 33 1 0.7043 -2.8264 1.8986 34 1 0.8838 -1.2584 2.7215 35 1 0.6301 -5.2200 3.1388 36 1 1.6798 -7.4435 2.7728 37 1 4.1548 -7.6297 2.9220 38 1 5.4839 -5.6211 3.4342 39 1 3.2851 -2.4440 5.4037 40 1 2.4831 -0.9543 4.6694 41 1 0.2088 -2.0464 4.9362 42 1 1.0097 -3.5365 5.6704 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000613983523.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:48:51 Heat of formation + Delta-G solvation = -35.193402 kcal Electronic energy + Delta-G solvation = -25936.149070 eV Core-core repulsion = 22236.003674 eV Total energy + Delta-G solvation = -3700.145396 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.125 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.34580 -38.80622 -38.29517 -37.29292 -36.89437 -35.09327 -34.50215 -33.32212 -31.87447 -30.27242 -27.55658 -26.75126 -24.78751 -24.52441 -23.83766 -23.02784 -20.97878 -20.33256 -19.17757 -18.69766 -18.37966 -17.92051 -17.32355 -17.02846 -16.76822 -16.27114 -16.05124 -15.54684 -15.49003 -15.15710 -14.69788 -14.48721 -14.42040 -14.25212 -14.05478 -14.00411 -13.55016 -13.42292 -13.19864 -13.12522 -12.99412 -12.99024 -12.36804 -12.32024 -12.27898 -12.25626 -11.97812 -11.70534 -11.44661 -11.18649 -10.78477 -10.77281 -10.55734 -10.25167 -9.87668 -9.75909 -8.28976 -6.35099 -0.38733 0.18374 0.39455 1.37238 1.42102 1.50035 2.00684 2.36014 2.55825 2.78755 2.87010 3.05144 3.28823 3.39653 3.69582 3.80044 3.96876 4.01626 4.06992 4.12164 4.28942 4.32206 4.43896 4.54164 4.69264 4.71740 4.76487 4.81939 4.84099 4.88826 4.93584 5.03030 5.08996 5.11398 5.25171 5.30733 5.32140 5.36013 5.48442 5.71095 5.82042 6.06611 6.31084 6.67908 7.09743 7.27958 8.88751 Molecular weight = 325.12amu Principal moments of inertia in cm(-1) A = 0.018738 B = 0.003634 C = 0.003529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.955077 B = 7702.569181 C = 7932.966833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.997 5.997 3 C 0.235 3.765 4 C -0.546 4.546 5 H 0.026 0.974 6 C 0.005 3.995 7 N -0.949 5.949 8 Si 0.946 3.054 9 H -0.272 1.272 10 H -0.278 1.278 11 H -0.225 1.225 12 S 2.797 3.203 13 O -1.015 7.015 14 O -1.010 7.010 15 N -1.115 6.115 16 C 0.157 3.843 17 C -0.110 4.110 18 C 0.149 3.851 19 C -0.172 4.172 20 C -0.081 4.081 21 C -0.178 4.178 22 C 0.078 3.922 23 N -0.505 5.505 24 C -0.153 4.153 25 C -0.127 4.127 26 H 0.088 0.912 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.061 0.939 30 H 0.032 0.968 31 H 0.268 0.732 32 H 0.420 0.580 33 H 0.081 0.919 34 H 0.097 0.903 35 H 0.151 0.849 36 H 0.161 0.839 37 H 0.160 0.840 38 H 0.171 0.829 39 H 0.091 0.909 40 H 0.107 0.893 41 H 0.127 0.873 42 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.777 -17.494 22.199 28.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.839 5.839 3 C 0.111 3.889 4 C -0.585 4.585 5 H 0.044 0.956 6 C -0.192 4.192 7 N -0.590 5.590 8 Si 0.767 3.233 9 H -0.197 1.197 10 H -0.204 1.204 11 H -0.147 1.147 12 S 2.805 3.195 13 O -0.999 6.999 14 O -0.993 6.993 15 N -0.878 5.878 16 C 0.031 3.969 17 C -0.112 4.112 18 C 0.011 3.989 19 C -0.192 4.192 20 C -0.107 4.107 21 C -0.198 4.198 22 C -0.078 4.078 23 N -0.214 5.214 24 C -0.191 4.191 25 C -0.166 4.166 26 H 0.107 0.893 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.079 0.921 30 H 0.050 0.950 31 H 0.077 0.923 32 H 0.255 0.745 33 H 0.099 0.901 34 H 0.115 0.885 35 H 0.169 0.831 36 H 0.179 0.821 37 H 0.178 0.822 38 H 0.188 0.812 39 H 0.109 0.891 40 H 0.125 0.875 41 H 0.145 0.855 42 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -5.143 -17.121 21.418 27.898 hybrid contribution 0.559 -0.046 -0.338 0.655 sum -4.584 -17.167 21.080 27.569 Atomic orbital electron populations 1.21680 0.77608 1.03567 1.03216 1.57283 1.15914 1.21240 1.89426 1.19214 0.91946 0.82468 0.95312 1.21742 1.36453 1.06807 0.93516 0.95575 1.25973 0.95721 0.98676 0.98857 1.70075 1.44114 1.22907 1.21868 0.85757 0.79748 0.77543 0.80234 1.19721 1.20384 1.14729 1.01193 0.72009 0.72701 0.73558 1.93573 1.43228 1.85476 1.77642 1.93493 1.67740 1.60215 1.77889 1.55749 1.16104 1.85303 1.30671 1.20977 0.86714 0.99904 0.89268 1.20067 1.06910 0.93068 0.91186 1.20381 0.89066 0.94107 0.95325 1.22204 1.02513 0.93324 1.01161 1.22004 0.95523 0.98289 0.94883 1.22488 0.95124 1.01166 1.01007 1.23184 1.01601 0.87841 0.95178 1.67384 1.12131 1.27655 1.14196 1.23009 0.97626 0.99173 0.99258 1.23219 0.95769 1.03221 0.94350 0.89318 0.91217 0.91153 0.92117 0.95012 0.92345 0.74538 0.90078 0.88515 0.83080 0.82133 0.82196 0.81237 0.89063 0.87509 0.85468 0.87752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.61 10.68 127.77 1.36 3.98 16 2 N -1.00 -39.34 3.23 -543.23 -1.75 -41.09 16 3 C 0.24 10.84 4.15 85.63 0.36 11.20 16 4 C -0.55 -32.23 9.94 25.60 0.25 -31.97 16 5 H 0.03 1.74 8.06 -2.91 -0.02 1.72 16 6 C 0.01 0.32 5.47 84.66 0.46 0.78 16 7 N -0.95 -60.89 13.96 21.45 0.30 -60.59 16 8 Si 0.95 43.09 27.47 68.60 1.88 44.97 16 9 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 10 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 11 H -0.22 -8.75 6.54 99.48 0.65 -8.10 16 12 S 2.80 111.39 6.10 -56.49 -0.34 111.05 16 13 O -1.02 -50.98 17.11 -128.00 -2.19 -53.17 16 14 O -1.01 -42.35 16.20 -128.00 -2.07 -44.42 16 15 N -1.12 -32.34 5.96 -187.49 -1.12 -33.46 16 16 C 0.16 3.33 6.08 86.38 0.53 3.86 16 17 C -0.11 -2.04 1.75 -52.93 -0.09 -2.13 16 18 C 0.15 3.22 5.77 42.55 0.25 3.47 16 19 C -0.17 -3.14 9.78 22.36 0.22 -2.92 16 20 C -0.08 -1.25 10.18 22.47 0.23 -1.03 16 21 C -0.18 -2.77 10.11 22.36 0.23 -2.54 16 22 C 0.08 1.53 11.18 84.67 0.95 2.48 16 23 N -0.50 -12.07 10.07 -183.89 -1.85 -13.93 16 24 C -0.15 -2.55 9.80 30.62 0.30 -2.25 16 25 C -0.13 -1.55 9.93 30.62 0.30 -1.25 16 26 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 27 H 0.07 2.30 8.07 -2.39 -0.02 2.29 16 28 H 0.07 2.15 7.02 -2.39 -0.02 2.13 16 29 H 0.06 2.49 7.17 -2.39 -0.02 2.47 16 30 H 0.03 1.46 7.04 -2.39 -0.02 1.44 16 31 H 0.27 15.90 8.31 -92.71 -0.77 15.13 16 32 H 0.42 12.07 8.66 -96.74 -0.84 11.23 16 33 H 0.08 1.72 7.74 -2.39 -0.02 1.70 16 34 H 0.10 1.58 8.09 -2.39 -0.02 1.56 16 35 H 0.15 2.10 8.06 -2.91 -0.02 2.07 16 36 H 0.16 1.49 8.06 -2.91 -0.02 1.47 16 37 H 0.16 1.49 8.06 -2.91 -0.02 1.47 16 38 H 0.17 2.50 8.06 -2.91 -0.02 2.48 16 39 H 0.09 1.69 8.13 -2.39 -0.02 1.67 16 40 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 41 H 0.13 1.02 8.14 -2.39 -0.02 1.00 16 42 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 Total: -1.00 -84.16 368.74 -1.67 -85.84 By element: Atomic # 1 Polarization: 22.98 SS G_CDS: 0.13 Total: 23.12 kcal Atomic # 6 Polarization: -23.66 SS G_CDS: 5.34 Total: -18.32 kcal Atomic # 7 Polarization: -144.64 SS G_CDS: -4.42 Total: -149.07 kcal Atomic # 8 Polarization: -93.32 SS G_CDS: -4.26 Total: -97.59 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 1.88 Total: 44.97 kcal Atomic # 16 Polarization: 111.39 SS G_CDS: -0.34 Total: 111.05 kcal Total: -84.16 -1.67 -85.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613983523.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.643 kcal (2) G-P(sol) polarization free energy of solvation -84.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds