Wall clock time and date at job start Fri Apr 10 2020 14:47:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.32213 * 119.81993 * 2 1 4 4 O 1.21256 * 122.89635 * 0.02625 * 3 2 1 5 5 C 1.51113 * 114.20676 * 179.97438 * 3 2 1 6 6 S 1.82383 * 103.49406 * 359.79985 * 5 3 2 7 7 C 1.36748 * 119.81545 * 180.02562 * 2 1 3 8 8 C 1.36442 * 126.26949 * 359.96359 * 7 2 1 9 9 C 1.40392 * 119.99998 * 352.58446 * 8 7 2 10 10 O 1.21905 * 119.99790 * 306.31418 * 9 8 7 11 11 N 1.34775 * 120.00139 * 126.30826 * 9 8 7 12 12 C 1.46505 * 119.99962 * 180.02562 * 11 9 8 13 13 C 1.53043 * 109.45694 * 155.00252 * 12 11 9 14 14 C 1.53196 * 109.30814 * 181.38368 * 13 12 11 15 15 N 1.46926 * 108.77607 * 305.36201 * 14 13 12 16 16 C 1.36932 * 120.63008 * 233.58475 * 15 14 13 17 17 H 1.08005 * 119.99809 * 26.80107 * 16 15 14 18 18 C 1.38807 * 120.00138 * 206.79118 * 16 15 14 19 19 N 1.31623 * 119.99546 * 32.34929 * 18 16 15 20 20 Si 1.86801 * 120.00427 * 212.34240 * 18 16 15 21 21 H 1.48502 * 109.47374 * 180.02562 * 20 18 16 22 22 H 1.48498 * 109.47053 * 300.00391 * 20 18 16 23 23 H 1.48501 * 109.46998 * 60.00134 * 20 18 16 24 24 C 1.46927 * 118.73678 * 53.86304 * 15 14 13 25 25 C 1.53035 * 109.45611 * 275.06574 * 12 11 9 26 26 H 1.09001 * 109.47299 * 275.32652 * 1 2 3 27 27 H 1.09000 * 109.47244 * 35.32953 * 1 2 3 28 28 H 1.09000 * 109.47353 * 155.32739 * 1 2 3 29 29 H 1.09008 * 110.61709 * 118.50274 * 5 3 2 30 30 H 1.08997 * 110.62144 * 241.49715 * 5 3 2 31 31 H 1.08005 * 119.99957 * 172.58307 * 8 7 2 32 32 H 0.96999 * 119.99841 * 0.02562 * 11 9 8 33 33 H 1.08994 * 109.46270 * 35.02767 * 12 11 9 34 34 H 1.08998 * 109.50067 * 61.43223 * 13 12 11 35 35 H 1.09000 * 109.52096 * 301.34958 * 13 12 11 36 36 H 1.09001 * 109.58210 * 185.57457 * 14 13 12 37 37 H 1.08996 * 109.70176 * 65.21937 * 14 13 12 38 38 H 0.97001 * 120.00209 * 359.94991 * 19 18 16 39 39 H 1.08993 * 109.58930 * 65.92614 * 24 15 14 40 40 H 1.09005 * 109.58490 * 186.35455 * 24 15 14 41 41 H 1.09004 * 109.50196 * 298.56895 * 25 12 11 42 42 H 1.09001 * 109.50107 * 58.66682 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1224 1.1471 0.0000 4 8 1.5666 2.2247 0.0005 5 6 3.6263 0.9993 0.0006 6 16 3.8764 -0.8073 0.0073 7 6 2.1449 -1.1865 -0.0005 8 6 1.5918 -2.4338 -0.0004 9 6 0.2051 -2.5867 0.1573 10 8 -0.3599 -2.0771 1.1097 11 7 -0.5014 -3.2968 -0.7444 12 6 -1.9485 -3.4560 -0.5801 13 6 -2.5906 -3.7184 -1.9443 14 6 -4.1073 -3.8498 -1.7734 15 7 -4.3819 -4.8854 -0.7680 16 6 -5.2192 -5.9306 -1.0537 17 1 -5.3423 -6.2603 -2.0748 18 6 -5.9097 -6.5663 -0.0311 19 7 -6.2969 -5.8832 1.0253 20 14 -6.2894 -8.3912 -0.1540 21 1 -7.0304 -8.8254 1.0575 22 1 -7.1199 -8.6439 -1.3588 23 1 -5.0201 -9.1549 -0.2587 24 6 -3.7458 -4.7750 0.5518 25 6 -2.2288 -4.6361 0.3530 26 1 -0.3634 0.0954 1.0232 27 1 -0.3634 0.8384 -0.5943 28 1 -0.3634 -0.9338 -0.4290 29 1 4.0563 1.4461 -0.8959 30 1 4.0556 1.4464 0.8972 31 1 2.2207 -3.3034 -0.1216 32 1 -0.0517 -3.7026 -1.5021 33 1 -2.3674 -2.5461 -0.1505 34 1 -2.1903 -4.6416 -2.3634 35 1 -2.3707 -2.8886 -2.6160 36 1 -4.5587 -4.1344 -2.7239 37 1 -4.5234 -2.8987 -1.4414 38 1 -6.0992 -4.9358 1.0894 39 1 -4.1310 -3.8973 1.0707 40 1 -3.9588 -5.6702 1.1361 41 1 -1.8319 -5.5507 -0.0877 42 1 -1.7515 -4.4592 1.3168 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000874440869.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:47:21 Heat of formation + Delta-G solvation = 3.410758 kcal Electronic energy + Delta-G solvation = -25692.032295 eV Core-core repulsion = 21993.560901 eV Total energy + Delta-G solvation = -3698.471394 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.125 amu Computer time = 2.51 seconds Orbital eigenvalues (eV) -41.71550 -40.10601 -37.84816 -36.89052 -34.62858 -32.68554 -31.88151 -31.35379 -30.19284 -29.33184 -27.24956 -25.24032 -23.99583 -22.47663 -22.05417 -21.15279 -20.08434 -19.24309 -18.71859 -17.69337 -17.23752 -17.07552 -16.47687 -16.04975 -15.83092 -14.91977 -14.62845 -14.37471 -14.26948 -14.07064 -13.84670 -13.53861 -13.40071 -13.26514 -13.13567 -12.97134 -12.46278 -11.99941 -11.82077 -11.76238 -11.64372 -11.21507 -10.76307 -10.74284 -10.70848 -10.47429 -10.27804 -10.09624 -10.00179 -9.88229 -9.41001 -9.35073 -8.80789 -8.26678 -8.16117 -6.89923 -6.19519 -3.19344 0.48428 0.61157 1.05330 1.98873 2.18466 2.71917 3.38205 3.45040 3.48655 3.52755 3.70596 4.29936 4.55019 4.57399 4.74971 4.95518 5.03007 5.18491 5.24223 5.26606 5.35066 5.38226 5.47568 5.63097 5.68057 5.70826 5.89963 6.09207 6.17710 6.22300 6.39911 6.45452 6.49856 6.61619 6.73333 6.75441 7.01560 7.07727 7.14788 7.53358 8.01380 8.19579 8.55725 9.08940 9.84118 10.29490 11.16272 Molecular weight = 325.12amu Principal moments of inertia in cm(-1) A = 0.031357 B = 0.002577 C = 0.002510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.720241 B =10864.084766 C =11152.877960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.541 5.541 3 C 0.520 3.480 4 O -0.486 6.486 5 C -0.142 4.142 6 S -0.066 6.066 7 C 0.166 3.834 8 C -0.231 4.231 9 C 0.559 3.441 10 O -0.542 6.542 11 N -0.719 5.719 12 C 0.150 3.850 13 C -0.139 4.139 14 C 0.151 3.849 15 N -0.598 5.598 16 C -0.364 4.364 17 H 0.056 0.944 18 C -0.020 4.020 19 N -0.904 5.904 20 Si 1.063 2.937 21 H -0.286 1.286 22 H -0.292 1.292 23 H -0.293 1.293 24 C 0.155 3.845 25 C -0.141 4.141 26 H 0.090 0.910 27 H 0.075 0.925 28 H 0.099 0.901 29 H 0.147 0.853 30 H 0.147 0.853 31 H 0.163 0.837 32 H 0.399 0.601 33 H 0.082 0.918 34 H 0.065 0.935 35 H 0.056 0.944 36 H 0.059 0.941 37 H 0.017 0.983 38 H 0.270 0.730 39 H 0.019 0.981 40 H 0.077 0.923 41 H 0.059 0.941 42 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.321 10.353 -4.938 25.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.262 5.262 3 C 0.306 3.694 4 O -0.360 6.360 5 C -0.293 4.293 6 S 0.174 5.826 7 C -0.046 4.046 8 C -0.268 4.268 9 C 0.347 3.653 10 O -0.422 6.422 11 N -0.370 5.370 12 C 0.046 3.954 13 C -0.179 4.179 14 C 0.024 3.976 15 N -0.322 5.322 16 C -0.492 4.492 17 H 0.074 0.926 18 C -0.224 4.224 19 N -0.543 5.543 20 Si 0.892 3.108 21 H -0.211 1.211 22 H -0.219 1.219 23 H -0.220 1.220 24 C 0.029 3.971 25 C -0.181 4.181 26 H 0.108 0.892 27 H 0.094 0.906 28 H 0.117 0.883 29 H 0.164 0.836 30 H 0.165 0.835 31 H 0.181 0.819 32 H 0.233 0.767 33 H 0.100 0.900 34 H 0.084 0.916 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.035 0.965 38 H 0.080 0.920 39 H 0.037 0.963 40 H 0.096 0.904 41 H 0.078 0.922 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 21.971 9.499 -3.486 24.189 hybrid contribution 0.024 1.659 -1.204 2.050 sum 21.996 11.159 -4.690 25.106 Atomic orbital electron populations 1.22843 0.75414 1.04624 1.04991 1.44689 1.10252 1.04621 1.66678 1.19738 0.88985 0.83868 0.76787 1.90838 1.71862 1.25983 1.47288 1.24436 0.96773 0.97259 1.10872 1.86860 1.00371 1.02989 1.92405 1.22004 0.93944 0.88168 1.00442 1.20929 0.96401 0.94541 1.14916 1.16265 0.86850 0.78782 0.83355 1.90989 1.71992 1.48441 1.30803 1.46483 1.09699 1.53552 1.27230 1.21039 0.77860 0.99540 0.96943 1.22328 0.99663 1.00911 0.94960 1.20813 0.90868 0.91924 0.94045 1.44184 1.52072 1.25356 1.10582 1.19861 1.24264 1.09507 0.95608 0.92573 1.25836 0.95037 1.05843 0.95659 1.70818 1.39136 1.10275 1.34034 0.83544 0.76001 0.75590 0.75628 1.21150 1.21943 1.22050 1.20969 0.87976 1.00171 0.88017 1.22503 1.00197 0.97083 0.98358 0.89170 0.90619 0.88287 0.83561 0.83489 0.81926 0.76750 0.90019 0.91626 0.92548 0.92205 0.96475 0.91973 0.96287 0.90432 0.92176 0.92527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.80 8.40 59.84 0.50 1.31 16 2 N -0.54 -6.04 2.95 -122.27 -0.36 -6.40 16 3 C 0.52 5.45 7.79 -11.91 -0.09 5.35 16 4 O -0.49 -6.59 17.02 5.58 0.09 -6.50 16 5 C -0.14 -0.85 7.36 36.21 0.27 -0.59 16 6 S -0.07 -0.47 23.35 -107.50 -2.51 -2.98 16 7 C 0.17 1.66 7.00 -16.01 -0.11 1.54 16 8 C -0.23 -2.34 9.69 -39.42 -0.38 -2.72 16 9 C 0.56 7.33 4.46 -15.45 -0.07 7.26 16 10 O -0.54 -9.05 13.27 5.00 0.07 -8.99 16 11 N -0.72 -8.89 4.99 -57.00 -0.28 -9.17 16 12 C 0.15 2.37 2.41 -67.89 -0.16 2.21 16 13 C -0.14 -2.16 5.55 -26.61 -0.15 -2.31 16 14 C 0.15 3.01 6.51 -3.71 -0.02 2.99 16 15 N -0.60 -14.56 2.84 -172.05 -0.49 -15.05 16 16 C -0.36 -9.97 9.42 -15.06 -0.14 -10.12 16 17 H 0.06 1.55 8.00 -52.48 -0.42 1.13 16 18 C -0.02 -0.57 4.46 -17.43 -0.08 -0.65 16 19 N -0.90 -26.98 12.66 55.49 0.70 -26.27 16 20 Si 1.06 24.96 30.02 -169.99 -5.10 19.86 16 21 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 22 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 23 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 24 C 0.16 3.60 4.84 -3.48 -0.02 3.58 16 25 C -0.14 -2.64 5.67 -26.39 -0.15 -2.79 16 26 H 0.09 1.28 7.27 -51.93 -0.38 0.90 16 27 H 0.08 0.90 7.65 -51.93 -0.40 0.51 16 28 H 0.10 1.29 4.20 -51.93 -0.22 1.07 16 29 H 0.15 0.54 8.14 -51.92 -0.42 0.12 16 30 H 0.15 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.16 1.22 8.06 -52.48 -0.42 0.79 16 32 H 0.40 3.84 8.55 -40.82 -0.35 3.49 16 33 H 0.08 1.44 7.58 -51.93 -0.39 1.04 16 34 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.06 1.19 7.93 -51.93 -0.41 0.78 16 37 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.27 8.14 7.07 -40.82 -0.29 7.85 16 39 H 0.02 0.46 7.98 -51.93 -0.41 0.04 16 40 H 0.08 2.02 6.44 -51.93 -0.33 1.68 16 41 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 42 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 349.73 15.07 5.27 5.27 Total: -1.00 -33.24 349.73 -9.00 -42.25 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -5.78 Total: 2.94 kcal Atomic # 6 Polarization: 5.67 SS G_CDS: -0.61 Total: 5.06 kcal Atomic # 7 Polarization: -56.47 SS G_CDS: -0.43 Total: -56.90 kcal Atomic # 8 Polarization: -15.65 SS G_CDS: 0.16 Total: -15.49 kcal Atomic # 14 Polarization: 24.96 SS G_CDS: -5.10 Total: 19.86 kcal Atomic # 16 Polarization: -0.47 SS G_CDS: -2.51 Total: -2.98 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -33.24 -9.00 -42.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874440869.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.656 kcal (2) G-P(sol) polarization free energy of solvation -33.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.245 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.51 seconds