Wall clock time and date at job start Fri Apr 10 2020 14:49:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42908 * 113.99525 * 2 1 4 4 C 1.50696 * 109.47034 * 180.02562 * 3 2 1 5 5 N 1.30939 * 122.90417 * 270.19331 * 4 3 2 6 6 C 1.29433 * 117.36247 * 180.30550 * 5 4 3 7 7 S 1.70949 * 110.39132 * 359.73028 * 6 5 4 8 8 C 1.35668 * 122.90428 * 89.99796 * 4 3 2 9 9 C 1.46680 * 126.13041 * 0.02562 * 8 4 3 10 10 O 1.21683 * 120.00158 * 359.71791 * 9 8 4 11 11 N 1.34771 * 119.99922 * 179.71364 * 9 8 4 12 12 C 1.47027 * 125.65008 * 359.97438 * 11 9 8 13 13 C 1.54327 * 107.27364 * 178.96328 * 12 11 9 14 14 C 1.55159 * 102.93735 * 337.80511 * 13 12 11 15 15 H 1.08997 * 111.00617 * 277.38903 * 14 13 12 16 16 N 1.46505 * 110.99783 * 153.57824 * 14 13 12 17 17 C 1.46499 * 120.00253 * 299.99658 * 16 14 13 18 18 C 1.36935 * 119.99788 * 120.00219 * 16 14 13 19 19 H 1.07996 * 120.00021 * 339.55667 * 18 16 14 20 20 C 1.38817 * 120.00136 * 159.27760 * 18 16 14 21 21 N 1.31615 * 119.99724 * 345.41540 * 20 18 16 22 22 Si 1.86793 * 120.00070 * 165.41274 * 20 18 16 23 23 H 1.48499 * 109.47293 * 94.71358 * 22 20 18 24 24 H 1.48506 * 109.47210 * 214.71206 * 22 20 18 25 25 H 1.48503 * 109.47238 * 334.70929 * 22 20 18 26 26 C 1.47423 * 125.64797 * 180.02562 * 11 9 8 27 27 H 1.08996 * 109.47294 * 299.99944 * 1 2 3 28 28 H 1.08996 * 109.47660 * 60.00585 * 1 2 3 29 29 H 1.09002 * 109.46704 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47241 * 59.99846 * 3 2 1 31 31 H 1.09003 * 109.47041 * 300.00055 * 3 2 1 32 32 H 1.08005 * 124.80345 * 179.69580 * 6 5 4 33 33 H 1.09001 * 109.88032 * 59.54064 * 12 11 9 34 34 H 1.09005 * 110.00789 * 298.45158 * 12 11 9 35 35 H 1.08996 * 110.71912 * 219.44495 * 13 12 11 36 36 H 1.09000 * 110.87020 * 96.23605 * 13 12 11 37 37 H 1.09003 * 109.47063 * 264.87913 * 17 16 14 38 38 H 1.08998 * 109.47167 * 24.87287 * 17 16 14 39 39 H 1.08997 * 109.47084 * 144.87398 * 17 16 14 40 40 H 0.97005 * 120.00281 * 179.97438 * 21 20 18 41 41 H 1.09000 * 110.36815 * 85.27182 * 26 11 9 42 42 H 1.08995 * 110.37046 * 322.94119 * 26 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5124 1.1867 -0.0006 5 7 4.2217 1.1267 1.0984 6 6 5.5064 1.0316 0.9729 7 16 5.9428 1.0021 -0.6797 8 6 4.2466 1.1287 -1.1400 9 6 3.7229 1.1709 -2.5095 10 8 2.5245 1.2610 -2.7001 11 7 4.5691 1.1098 -3.5567 12 6 6.0328 1.0006 -3.4704 13 6 6.5733 0.9363 -4.9145 14 6 5.3448 0.4430 -5.7237 15 1 5.2501 -0.6414 -5.6680 16 7 5.4199 0.8900 -7.1169 17 6 5.4649 2.3214 -7.4256 18 6 5.4481 -0.0303 -8.1305 19 1 5.7439 -1.0488 -7.9271 20 6 5.0908 0.3446 -9.4185 21 7 4.4584 1.4809 -9.6215 22 14 5.5075 -0.7635 -10.8633 23 1 4.3456 -1.6362 -11.1691 24 1 5.8267 0.0698 -12.0504 25 1 6.6817 -1.6051 -10.5192 26 6 4.1804 1.1425 -4.9784 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.6885 1.8465 0.8899 31 1 1.6885 1.8465 -0.8900 32 1 6.2039 0.9790 1.7958 33 1 6.3057 0.0933 -2.9316 34 1 6.4423 1.8722 -2.9598 35 1 7.3946 0.2235 -4.9874 36 1 6.8889 1.9224 -5.2553 37 1 4.4576 2.6786 -7.6399 38 1 5.8690 2.8648 -6.5715 39 1 6.1014 2.4857 -8.2950 40 1 4.2090 1.7432 -10.5215 41 1 4.0758 2.1724 -5.3195 42 1 3.2501 0.5953 -5.1300 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972507257.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:49:24 Heat of formation + Delta-G solvation = 10.239486 kcal Electronic energy + Delta-G solvation = -25612.474822 eV Core-core repulsion = 21914.299544 eV Total energy + Delta-G solvation = -3698.175278 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.125 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.53180 -39.47838 -37.58211 -37.35861 -34.92047 -31.97467 -31.37206 -29.95611 -28.76270 -27.52290 -26.26336 -26.09782 -24.68138 -23.81121 -22.48826 -21.11460 -19.42953 -18.87086 -18.48604 -17.14804 -16.69195 -16.55028 -16.11030 -15.89702 -15.50802 -15.11146 -14.89773 -14.50763 -14.28201 -13.91345 -13.51761 -13.44566 -13.04725 -12.79941 -12.52334 -12.47216 -12.37616 -12.09917 -11.75758 -11.57176 -11.32264 -10.97663 -10.85617 -10.57873 -10.54812 -10.37247 -10.13550 -10.02399 -9.91520 -9.79596 -9.66841 -9.48675 -9.23256 -8.64918 -8.42982 -6.89778 -5.81624 -3.27116 0.04981 0.98833 1.38174 2.21496 2.99553 3.10092 3.34236 3.41440 3.43028 3.74034 4.18258 4.41629 4.51723 4.77790 4.84933 4.88925 5.11406 5.21047 5.22999 5.33972 5.36225 5.42286 5.52915 5.54153 5.63766 5.67471 5.79288 5.85552 5.90117 6.21208 6.26258 6.38650 6.52910 6.69073 6.78165 7.06821 7.28654 7.37780 7.58917 7.63985 7.73764 8.14726 8.28428 9.12882 9.75360 10.22720 11.23098 Molecular weight = 325.12amu Principal moments of inertia in cm(-1) A = 0.019142 B = 0.003109 C = 0.002817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.371785 B = 9002.931890 C = 9937.483883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.380 6.380 3 C 0.130 3.870 4 C 0.132 3.868 5 N -0.465 5.465 6 C 0.007 3.993 7 S 0.194 5.806 8 C -0.260 4.260 9 C 0.603 3.397 10 O -0.522 6.522 11 N -0.605 5.605 12 C 0.090 3.910 13 C -0.148 4.148 14 C 0.173 3.827 15 H 0.080 0.920 16 N -0.584 5.584 17 C 0.159 3.841 18 C -0.263 4.263 19 H 0.072 0.928 20 C 0.005 3.995 21 N -0.903 5.903 22 Si 0.907 3.093 23 H -0.287 1.287 24 H -0.289 1.289 25 H -0.279 1.279 26 C 0.090 3.910 27 H 0.039 0.961 28 H 0.047 0.953 29 H 0.085 0.915 30 H 0.062 0.938 31 H 0.093 0.907 32 H 0.203 0.797 33 H 0.069 0.931 34 H 0.067 0.933 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.032 0.968 38 H 0.002 0.998 39 H 0.046 0.954 40 H 0.254 0.746 41 H 0.072 0.928 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.905 0.953 20.188 20.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.298 6.298 3 C 0.051 3.949 4 C -0.007 4.007 5 N -0.178 5.178 6 C -0.288 4.288 7 S 0.450 5.550 8 C -0.385 4.385 9 C 0.389 3.611 10 O -0.400 6.400 11 N -0.339 5.339 12 C -0.035 4.035 13 C -0.188 4.188 14 C 0.062 3.938 15 H 0.098 0.902 16 N -0.304 5.304 17 C 0.015 3.985 18 C -0.392 4.392 19 H 0.090 0.910 20 C -0.194 4.194 21 N -0.548 5.548 22 Si 0.736 3.264 23 H -0.214 1.214 24 H -0.215 1.215 25 H -0.204 1.204 26 C -0.034 4.034 27 H 0.058 0.942 28 H 0.065 0.935 29 H 0.104 0.896 30 H 0.080 0.920 31 H 0.111 0.889 32 H 0.220 0.780 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.098 0.902 36 H 0.098 0.902 37 H 0.050 0.950 38 H 0.020 0.980 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.091 0.909 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 3.080 0.866 19.967 20.221 hybrid contribution -0.747 -0.210 -0.553 0.953 sum 2.333 0.656 19.414 19.565 Atomic orbital electron populations 1.22719 0.80509 1.02758 1.00105 1.87888 1.19952 1.26491 1.95501 1.21008 0.85196 0.86199 1.02471 1.20195 0.97137 0.97987 0.85382 1.66072 1.05163 1.15321 1.31282 1.28880 0.95357 1.02341 1.02263 1.84308 1.05333 1.64215 1.01101 1.25680 0.96591 1.16970 0.99246 1.16268 0.85509 0.77657 0.81628 1.90792 1.13976 1.50854 1.84425 1.48363 1.07123 1.71171 1.07203 1.22202 0.80378 1.00923 0.99957 1.23212 1.00559 1.03349 0.91696 1.21466 0.89957 0.97344 0.85031 0.90171 1.43891 1.84334 1.03069 0.99076 1.20829 0.99902 0.82338 0.95455 1.19236 1.39692 0.92868 0.87396 0.91033 1.25008 0.98368 0.97574 0.98438 1.70088 1.40887 1.23169 1.20611 0.86216 0.78208 0.79725 0.82221 1.21415 1.21544 1.20392 1.23183 1.01117 1.02270 0.76852 0.94245 0.93466 0.89628 0.91983 0.88914 0.77993 0.91286 0.91457 0.90175 0.90172 0.94953 0.97994 0.93556 0.93584 0.90933 0.90421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.39 11.01 101.05 1.11 1.51 16 2 O -0.38 -5.70 10.69 -35.23 -0.38 -6.08 16 3 C 0.13 1.83 5.74 36.00 0.21 2.03 16 4 C 0.13 1.89 6.42 -83.89 -0.54 1.35 16 5 N -0.46 -6.00 10.50 -11.53 -0.12 -6.12 16 6 C 0.01 0.06 12.22 51.75 0.63 0.69 16 7 S 0.19 1.89 18.69 -107.50 -2.01 -0.12 16 8 C -0.26 -3.71 6.40 -37.09 -0.24 -3.94 16 9 C 0.60 10.21 7.81 -12.85 -0.10 10.11 16 10 O -0.52 -10.24 14.53 5.20 0.08 -10.16 16 11 N -0.61 -9.79 3.33 -172.04 -0.57 -10.36 16 12 C 0.09 1.16 5.19 -3.06 -0.02 1.15 16 13 C -0.15 -2.19 6.50 -24.89 -0.16 -2.36 16 14 C 0.17 3.29 3.54 -65.76 -0.23 3.06 16 15 H 0.08 1.55 7.95 -51.93 -0.41 1.14 16 16 N -0.58 -13.70 2.96 -171.01 -0.51 -14.21 16 17 C 0.16 3.68 7.56 59.85 0.45 4.13 16 18 C -0.26 -6.88 9.63 -15.06 -0.14 -7.02 16 19 H 0.07 1.82 7.86 -52.49 -0.41 1.41 16 20 C 0.01 0.14 5.07 -17.43 -0.09 0.05 16 21 N -0.90 -25.51 10.66 55.49 0.59 -24.91 16 22 Si 0.91 21.17 29.58 -169.99 -5.03 16.14 16 23 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 24 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 25 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 26 C 0.09 1.67 6.46 -2.52 -0.02 1.66 16 27 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.09 1.39 6.01 -51.93 -0.31 1.08 16 32 H 0.20 1.06 8.06 -52.48 -0.42 0.63 16 33 H 0.07 0.79 6.87 -51.93 -0.36 0.43 16 34 H 0.07 0.75 7.02 -51.93 -0.36 0.39 16 35 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.08 1.23 6.46 -51.93 -0.34 0.89 16 37 H 0.03 0.82 7.39 -51.93 -0.38 0.44 16 38 H 0.00 0.03 6.38 -51.93 -0.33 -0.30 16 39 H 0.05 1.16 7.23 -51.93 -0.38 0.78 16 40 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 41 H 0.07 1.43 6.96 -51.93 -0.36 1.07 16 42 H 0.08 1.59 8.04 -51.93 -0.42 1.17 16 LS Contribution 351.03 15.07 5.29 5.29 Total: -1.00 -32.13 351.03 -7.52 -39.66 By element: Atomic # 1 Polarization: 4.19 SS G_CDS: -5.73 Total: -1.54 kcal Atomic # 6 Polarization: 11.55 SS G_CDS: 0.87 Total: 12.42 kcal Atomic # 7 Polarization: -54.99 SS G_CDS: -0.61 Total: -55.60 kcal Atomic # 8 Polarization: -15.94 SS G_CDS: -0.30 Total: -16.24 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.03 Total: 16.14 kcal Atomic # 16 Polarization: 1.89 SS G_CDS: -2.01 Total: -0.12 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.13 -7.52 -39.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972507257.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.895 kcal (2) G-P(sol) polarization free energy of solvation -32.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.656 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds