Wall clock time and date at job start Fri Apr 10 2020 14:49:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42908 * 113.99525 * 2 1 4 4 C 1.50696 * 109.47034 * 180.02562 * 3 2 1 5 5 N 1.30939 * 122.90417 * 270.19331 * 4 3 2 6 6 C 1.29433 * 117.36247 * 180.30550 * 5 4 3 7 7 S 1.70949 * 110.39132 * 359.73028 * 6 5 4 8 8 C 1.35668 * 122.90428 * 89.99796 * 4 3 2 9 9 C 1.46680 * 126.13041 * 0.02562 * 8 4 3 10 10 O 1.21683 * 120.00158 * 359.71791 * 9 8 4 11 11 N 1.34771 * 119.99922 * 179.71364 * 9 8 4 12 12 C 1.47027 * 125.65008 * 359.97438 * 11 9 8 13 13 C 1.54327 * 107.27364 * 178.96328 * 12 11 9 14 14 C 1.55159 * 102.93735 * 337.80511 * 13 12 11 15 15 H 1.08997 * 111.00617 * 277.38903 * 14 13 12 16 16 N 1.46505 * 110.99783 * 153.57824 * 14 13 12 17 17 C 1.46499 * 120.00253 * 299.99658 * 16 14 13 18 18 C 1.36935 * 119.99788 * 120.00219 * 16 14 13 19 19 H 1.07996 * 120.00021 * 339.55667 * 18 16 14 20 20 C 1.38817 * 120.00136 * 159.27760 * 18 16 14 21 21 N 1.31615 * 119.99724 * 345.41540 * 20 18 16 22 22 Si 1.86793 * 120.00070 * 165.41274 * 20 18 16 23 23 H 1.48499 * 109.47293 * 94.71358 * 22 20 18 24 24 H 1.48506 * 109.47210 * 214.71206 * 22 20 18 25 25 H 1.48503 * 109.47238 * 334.70929 * 22 20 18 26 26 C 1.47423 * 125.64797 * 180.02562 * 11 9 8 27 27 H 1.08996 * 109.47294 * 299.99944 * 1 2 3 28 28 H 1.08996 * 109.47660 * 60.00585 * 1 2 3 29 29 H 1.09002 * 109.46704 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47241 * 59.99846 * 3 2 1 31 31 H 1.09003 * 109.47041 * 300.00055 * 3 2 1 32 32 H 1.08005 * 124.80345 * 179.69580 * 6 5 4 33 33 H 1.09001 * 109.88032 * 59.54064 * 12 11 9 34 34 H 1.09005 * 110.00789 * 298.45158 * 12 11 9 35 35 H 1.08996 * 110.71912 * 219.44495 * 13 12 11 36 36 H 1.09000 * 110.87020 * 96.23605 * 13 12 11 37 37 H 1.09003 * 109.47063 * 264.87913 * 17 16 14 38 38 H 1.08998 * 109.47167 * 24.87287 * 17 16 14 39 39 H 1.08997 * 109.47084 * 144.87398 * 17 16 14 40 40 H 0.97005 * 120.00281 * 179.97438 * 21 20 18 41 41 H 1.09000 * 110.36815 * 85.27182 * 26 11 9 42 42 H 1.08995 * 110.37046 * 322.94119 * 26 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5124 1.1867 -0.0006 5 7 4.2217 1.1267 1.0984 6 6 5.5064 1.0316 0.9729 7 16 5.9428 1.0021 -0.6797 8 6 4.2466 1.1287 -1.1400 9 6 3.7229 1.1709 -2.5095 10 8 2.5245 1.2610 -2.7001 11 7 4.5691 1.1098 -3.5567 12 6 6.0328 1.0006 -3.4704 13 6 6.5733 0.9363 -4.9145 14 6 5.3448 0.4430 -5.7237 15 1 5.2501 -0.6414 -5.6680 16 7 5.4199 0.8900 -7.1169 17 6 5.4649 2.3214 -7.4256 18 6 5.4481 -0.0303 -8.1305 19 1 5.7439 -1.0488 -7.9271 20 6 5.0908 0.3446 -9.4185 21 7 4.4584 1.4809 -9.6215 22 14 5.5075 -0.7635 -10.8633 23 1 4.3456 -1.6362 -11.1691 24 1 5.8267 0.0698 -12.0504 25 1 6.6817 -1.6051 -10.5192 26 6 4.1804 1.1425 -4.9784 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.6885 1.8465 0.8899 31 1 1.6885 1.8465 -0.8900 32 1 6.2039 0.9790 1.7958 33 1 6.3057 0.0933 -2.9316 34 1 6.4423 1.8722 -2.9598 35 1 7.3946 0.2235 -4.9874 36 1 6.8889 1.9224 -5.2553 37 1 4.4576 2.6786 -7.6399 38 1 5.8690 2.8648 -6.5715 39 1 6.1014 2.4857 -8.2950 40 1 4.2090 1.7432 -10.5215 41 1 4.0758 2.1724 -5.3195 42 1 3.2501 0.5953 -5.1300 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972507257.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:49:23 Heat of formation + Delta-G solvation = -12.542320 kcal Electronic energy + Delta-G solvation = -25613.462715 eV Core-core repulsion = 21914.299544 eV Total energy + Delta-G solvation = -3699.163171 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.125 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.62224 -40.66634 -38.85332 -38.53897 -36.62845 -33.62252 -32.50042 -31.43969 -30.01295 -28.76654 -28.06519 -27.18860 -25.61987 -25.32051 -23.97394 -22.27260 -20.99886 -19.83370 -19.59990 -18.96127 -17.82447 -17.71653 -17.44537 -17.16746 -16.54478 -16.49264 -16.09574 -15.80860 -15.35008 -15.18653 -14.99713 -14.87449 -14.40279 -14.24547 -13.99308 -13.86735 -13.52806 -13.40931 -13.11228 -12.79052 -12.62558 -12.50873 -12.41043 -12.29746 -12.19468 -12.08138 -11.84034 -11.49605 -11.34751 -10.75352 -10.63435 -10.62649 -10.56574 -10.17496 -9.69973 -8.83147 -7.83984 -5.31400 -0.87579 0.11455 0.53748 1.26129 1.48679 1.49778 1.59358 1.73236 1.90595 2.51907 2.84368 3.22623 3.29666 3.44768 3.48373 3.82159 3.84558 3.99606 4.09805 4.11190 4.23189 4.34128 4.38470 4.44750 4.50523 4.54107 4.58389 4.76815 4.78655 4.79369 4.91264 4.94049 5.08772 5.19559 5.27074 5.41705 5.64500 5.72707 6.08756 6.29188 6.30710 6.53621 6.87403 7.13072 7.83645 8.26501 9.19130 Molecular weight = 325.12amu Principal moments of inertia in cm(-1) A = 0.019142 B = 0.003109 C = 0.002817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.371785 B = 9002.931890 C = 9937.483883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.406 6.406 3 C 0.128 3.872 4 C 0.127 3.873 5 N -0.493 5.493 6 C 0.025 3.975 7 S 0.265 5.735 8 C -0.303 4.303 9 C 0.599 3.401 10 O -0.564 6.564 11 N -0.607 5.607 12 C 0.091 3.909 13 C -0.132 4.132 14 C 0.166 3.834 15 H 0.076 0.924 16 N -0.599 5.599 17 C 0.177 3.823 18 C -0.267 4.267 19 H 0.078 0.922 20 C -0.051 4.051 21 N -0.938 5.938 22 Si 0.969 3.031 23 H -0.290 1.290 24 H -0.294 1.294 25 H -0.265 1.265 26 C 0.101 3.899 27 H 0.061 0.939 28 H 0.039 0.961 29 H 0.099 0.901 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.250 0.750 33 H 0.093 0.907 34 H 0.095 0.905 35 H 0.103 0.897 36 H 0.079 0.921 37 H -0.002 1.002 38 H 0.036 0.964 39 H 0.021 0.979 40 H 0.248 0.752 41 H 0.057 0.943 42 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.764 0.156 22.820 23.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.325 6.325 3 C 0.050 3.950 4 C -0.014 4.014 5 N -0.208 5.208 6 C -0.268 4.268 7 S 0.522 5.478 8 C -0.428 4.428 9 C 0.387 3.613 10 O -0.445 6.445 11 N -0.339 5.339 12 C -0.032 4.032 13 C -0.172 4.172 14 C 0.056 3.944 15 H 0.094 0.906 16 N -0.320 5.320 17 C 0.033 3.967 18 C -0.396 4.396 19 H 0.095 0.905 20 C -0.247 4.247 21 N -0.584 5.584 22 Si 0.797 3.203 23 H -0.218 1.218 24 H -0.221 1.221 25 H -0.189 1.189 26 C -0.024 4.024 27 H 0.080 0.920 28 H 0.057 0.943 29 H 0.117 0.883 30 H 0.096 0.904 31 H 0.091 0.909 32 H 0.265 0.735 33 H 0.111 0.889 34 H 0.113 0.887 35 H 0.121 0.879 36 H 0.098 0.902 37 H 0.017 0.983 38 H 0.055 0.945 39 H 0.040 0.960 40 H 0.057 0.943 41 H 0.076 0.924 42 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 5.994 0.049 22.646 23.426 hybrid contribution -1.612 0.014 -1.208 2.015 sum 4.381 0.063 21.439 21.882 Atomic orbital electron populations 1.22901 0.78946 1.03908 1.00787 1.87835 1.21853 1.27186 1.95627 1.20988 0.85946 0.85908 1.02204 1.20296 0.97336 0.97641 0.86081 1.66135 1.06597 1.17384 1.30651 1.29711 0.94860 0.98603 1.03651 1.83880 1.00849 1.62625 1.00399 1.25442 1.00092 1.19849 0.97423 1.16678 0.85087 0.76709 0.82783 1.90763 1.15859 1.52530 1.85326 1.48339 1.08606 1.71217 1.05780 1.22404 0.78090 1.03420 0.99285 1.23055 0.98873 1.03634 0.91624 1.21622 0.92144 0.97189 0.83404 0.90610 1.44057 1.84708 1.02746 1.00493 1.20515 0.97581 0.82852 0.95801 1.19615 1.38278 0.93503 0.88249 0.90453 1.25768 0.98958 0.99026 1.00918 1.70260 1.42647 1.24989 1.20490 0.85230 0.78058 0.77973 0.78992 1.21765 1.22096 1.18936 1.22761 0.99862 1.00766 0.79009 0.92042 0.94269 0.88291 0.90435 0.90866 0.73453 0.88868 0.88685 0.87892 0.90229 0.98319 0.94535 0.96027 0.94279 0.92423 0.93408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.68 11.01 113.37 1.25 1.93 16 2 O -0.41 -12.35 10.69 -148.98 -1.59 -13.95 16 3 C 0.13 3.66 5.74 71.23 0.41 4.07 16 4 C 0.13 3.51 6.42 42.09 0.27 3.78 16 5 N -0.49 -11.44 10.50 -190.40 -2.00 -13.44 16 6 C 0.03 0.36 12.22 130.60 1.60 1.96 16 7 S 0.26 4.04 18.69 -56.49 -1.06 2.98 16 8 C -0.30 -8.21 6.40 23.88 0.15 -8.06 16 9 C 0.60 20.38 7.81 86.45 0.68 21.06 16 10 O -0.56 -23.26 14.53 -4.30 -0.06 -23.32 16 11 N -0.61 -19.20 3.33 -816.44 -2.72 -21.91 16 12 C 0.09 2.06 5.19 86.73 0.45 2.51 16 13 C -0.13 -3.54 6.50 31.78 0.21 -3.34 16 14 C 0.17 6.22 3.54 46.39 0.16 6.38 16 15 H 0.08 2.90 7.95 -2.39 -0.02 2.88 16 16 N -0.60 -28.34 2.96 -694.97 -2.06 -30.40 16 17 C 0.18 8.37 7.56 127.77 0.97 9.33 16 18 C -0.27 -14.04 9.63 84.03 0.81 -13.23 16 19 H 0.08 3.90 7.86 -2.91 -0.02 3.88 16 20 C -0.05 -2.81 5.07 84.86 0.43 -2.38 16 21 N -0.94 -54.75 10.66 21.65 0.23 -54.52 16 22 Si 0.97 44.06 29.58 68.60 2.03 46.09 16 23 H -0.29 -13.24 7.11 99.48 0.71 -12.54 16 24 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 25 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 26 C 0.10 3.87 6.46 86.86 0.56 4.43 16 27 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.07 2.34 6.01 -2.39 -0.01 2.32 16 32 H 0.25 1.03 8.06 -2.91 -0.02 1.00 16 33 H 0.09 1.70 6.87 -2.39 -0.02 1.69 16 34 H 0.10 1.69 7.02 -2.38 -0.02 1.67 16 35 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 36 H 0.08 2.19 6.46 -2.39 -0.02 2.17 16 37 H 0.00 -0.08 7.39 -2.39 -0.02 -0.10 16 38 H 0.04 1.43 6.38 -2.39 -0.02 1.42 16 39 H 0.02 1.09 7.23 -2.39 -0.02 1.07 16 40 H 0.25 14.14 8.31 -92.70 -0.77 13.37 16 41 H 0.06 2.36 6.96 -2.39 -0.02 2.35 16 42 H 0.05 2.08 8.04 -2.39 -0.02 2.06 16 Total: -1.00 -73.99 351.03 1.75 -72.23 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: 1.04 Total: 7.79 kcal Atomic # 6 Polarization: 20.50 SS G_CDS: 7.94 Total: 28.43 kcal Atomic # 7 Polarization: -113.73 SS G_CDS: -6.54 Total: -120.27 kcal Atomic # 8 Polarization: -35.61 SS G_CDS: -1.65 Total: -37.27 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Atomic # 16 Polarization: 4.04 SS G_CDS: -1.06 Total: 2.98 kcal Total: -73.99 1.75 -72.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972507257.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.692 kcal (2) G-P(sol) polarization free energy of solvation -73.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds