Wall clock time and date at job start Fri Apr 10 2020 14:49:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42907 * 114.00137 * 2 1 4 4 C 1.50693 * 109.47143 * 179.97438 * 3 2 1 5 5 N 1.30941 * 122.90985 * 270.03651 * 4 3 2 6 6 C 1.29424 * 117.36903 * 179.97438 * 5 4 3 7 7 S 1.70954 * 110.38984 * 0.02562 * 6 5 4 8 8 C 1.35664 * 122.90306 * 90.00327 * 4 3 2 9 9 C 1.46690 * 126.13128 * 359.76946 * 8 4 3 10 10 O 1.21686 * 119.99674 * 0.02562 * 9 8 4 11 11 N 1.34772 * 120.00314 * 180.02562 * 9 8 4 12 12 C 1.47028 * 125.64443 * 0.02562 * 11 9 8 13 13 C 1.54327 * 107.26556 * 181.02198 * 12 11 9 14 14 C 1.55153 * 102.94563 * 22.19333 * 13 12 11 15 15 H 1.09002 * 111.00467 * 82.60650 * 14 13 12 16 16 N 1.46496 * 111.00631 * 206.42053 * 14 13 12 17 17 C 1.46506 * 119.99741 * 59.99916 * 16 14 13 18 18 C 1.36935 * 120.00324 * 240.00393 * 16 14 13 19 19 H 1.07995 * 119.99933 * 23.24135 * 18 16 14 20 20 C 1.38813 * 119.99765 * 203.24573 * 18 16 14 21 21 N 1.31620 * 120.00387 * 13.76234 * 20 18 16 22 22 Si 1.86799 * 120.00024 * 193.75286 * 20 18 16 23 23 H 1.48500 * 109.46974 * 59.99978 * 22 20 18 24 24 H 1.48498 * 109.47367 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.47297 * 300.00605 * 22 20 18 26 26 C 1.47425 * 125.65134 * 179.71575 * 11 9 8 27 27 H 1.09001 * 109.47108 * 59.99986 * 1 2 3 28 28 H 1.09004 * 109.47335 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47571 * 300.00530 * 1 2 3 30 30 H 1.09002 * 109.47086 * 59.99543 * 3 2 1 31 31 H 1.09003 * 109.46761 * 300.00034 * 3 2 1 32 32 H 1.07996 * 124.80797 * 180.02562 * 6 5 4 33 33 H 1.09001 * 109.88415 * 300.43595 * 12 11 9 34 34 H 1.09002 * 109.88339 * 61.45324 * 12 11 9 35 35 H 1.09002 * 110.71709 * 140.55695 * 13 12 11 36 36 H 1.09002 * 110.72228 * 263.64909 * 13 12 11 37 37 H 1.08997 * 109.46975 * 95.16086 * 17 16 14 38 38 H 1.09004 * 109.47098 * 215.16146 * 17 16 14 39 39 H 1.09004 * 109.47163 * 335.15623 * 17 16 14 40 40 H 0.96998 * 120.00120 * 180.02562 * 21 20 18 41 41 H 1.08999 * 110.36274 * 274.75032 * 26 11 9 42 42 H 1.09006 * 110.36272 * 37.06863 * 26 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5124 1.1865 0.0006 5 7 4.2211 1.1298 1.1002 6 6 5.5053 1.0276 0.9758 7 16 5.9428 0.9939 -0.6765 8 6 4.2476 1.1281 -1.1381 9 6 3.7245 1.1647 -2.5081 10 8 2.5263 1.2556 -2.6996 11 7 4.5710 1.0976 -3.5546 12 6 6.0344 0.9857 -3.4672 13 6 6.5795 0.9671 -4.9108 14 6 5.4397 1.6388 -5.7214 15 1 5.5089 2.7252 -5.6663 16 7 5.4478 1.1849 -7.1142 17 6 5.2775 -0.2373 -7.4221 18 6 5.6147 2.0898 -8.1283 19 1 6.1010 3.0344 -7.9346 20 6 5.1587 1.7929 -9.4054 21 7 4.3367 0.7821 -9.5923 22 14 5.7112 2.8283 -10.8586 23 1 7.1897 2.7607 -10.9809 24 1 5.0870 2.3094 -12.1021 25 1 5.2961 4.2385 -10.6481 26 6 4.1826 1.1177 -4.9766 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.6885 1.8465 0.8900 31 1 1.6886 1.8464 -0.8900 32 1 6.2019 0.9715 1.7992 33 1 6.4402 1.8421 -2.9287 34 1 6.3057 0.0629 -2.9542 35 1 7.4987 1.5485 -4.9835 36 1 6.7446 -0.0563 -5.2477 37 1 4.2283 -0.4392 -7.6377 38 1 5.8832 -0.4961 -8.2906 39 1 5.5944 -0.8346 -6.5672 40 1 4.0184 0.5744 -10.4847 41 1 3.9278 0.1133 -5.3145 42 1 3.3427 1.7953 -5.1308 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972507258.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:49:28 Heat of formation + Delta-G solvation = 9.393947 kcal Electronic energy + Delta-G solvation = -25610.944689 eV Core-core repulsion = 21912.732745 eV Total energy + Delta-G solvation = -3698.211944 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.125 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.52792 -39.47139 -37.58064 -37.35027 -34.90800 -31.96883 -31.37133 -29.95915 -28.75674 -27.51796 -26.26183 -26.08737 -24.67862 -23.81113 -22.48700 -21.10846 -19.43002 -18.86781 -18.47900 -17.13204 -16.65489 -16.59567 -16.15332 -15.83489 -15.50944 -15.08340 -14.91091 -14.52124 -14.30379 -13.88131 -13.52005 -13.45421 -13.04158 -12.78374 -12.51686 -12.48713 -12.38316 -12.07092 -11.77127 -11.55264 -11.32976 -10.96806 -10.86249 -10.57283 -10.55348 -10.38737 -10.13214 -10.02995 -9.92736 -9.79407 -9.66629 -9.48477 -9.23230 -8.64714 -8.42540 -6.86774 -5.81449 -3.29930 0.05302 0.99105 1.38435 2.21689 3.00257 3.10497 3.34713 3.40635 3.41153 3.74230 4.18318 4.41336 4.52012 4.78053 4.85364 4.89241 5.12028 5.20913 5.23268 5.34011 5.35900 5.42411 5.53272 5.54431 5.63551 5.68227 5.79472 5.85832 5.90162 6.21407 6.27545 6.39102 6.53007 6.69802 6.78704 7.06828 7.26856 7.38030 7.59472 7.65042 7.72828 8.15338 8.29802 9.12739 9.74845 10.23497 11.22732 Molecular weight = 325.12amu Principal moments of inertia in cm(-1) A = 0.019766 B = 0.003093 C = 0.002797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.205119 B = 9049.681617 C =10009.974625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.380 6.380 3 C 0.130 3.870 4 C 0.132 3.868 5 N -0.465 5.465 6 C 0.007 3.993 7 S 0.194 5.806 8 C -0.260 4.260 9 C 0.603 3.397 10 O -0.522 6.522 11 N -0.606 5.606 12 C 0.090 3.910 13 C -0.148 4.148 14 C 0.173 3.827 15 H 0.080 0.920 16 N -0.583 5.583 17 C 0.158 3.842 18 C -0.265 4.265 19 H 0.070 0.930 20 C 0.007 3.993 21 N -0.902 5.902 22 Si 0.907 3.093 23 H -0.283 1.283 24 H -0.290 1.290 25 H -0.282 1.282 26 C 0.090 3.910 27 H 0.047 0.953 28 H 0.085 0.915 29 H 0.039 0.961 30 H 0.062 0.938 31 H 0.093 0.907 32 H 0.203 0.797 33 H 0.069 0.931 34 H 0.067 0.933 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.034 0.966 38 H 0.043 0.957 39 H 0.003 0.997 40 H 0.255 0.745 41 H 0.073 0.927 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.882 -0.373 20.072 20.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.299 6.299 3 C 0.051 3.949 4 C -0.007 4.007 5 N -0.178 5.178 6 C -0.288 4.288 7 S 0.450 5.550 8 C -0.385 4.385 9 C 0.389 3.611 10 O -0.401 6.401 11 N -0.339 5.339 12 C -0.035 4.035 13 C -0.188 4.188 14 C 0.063 3.937 15 H 0.099 0.901 16 N -0.303 5.303 17 C 0.013 3.987 18 C -0.395 4.395 19 H 0.088 0.912 20 C -0.192 4.192 21 N -0.546 5.546 22 Si 0.737 3.263 23 H -0.210 1.210 24 H -0.216 1.216 25 H -0.208 1.208 26 C -0.034 4.034 27 H 0.065 0.935 28 H 0.104 0.896 29 H 0.058 0.942 30 H 0.080 0.920 31 H 0.111 0.889 32 H 0.220 0.780 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.098 0.902 36 H 0.098 0.902 37 H 0.052 0.948 38 H 0.062 0.938 39 H 0.021 0.979 40 H 0.065 0.935 41 H 0.091 0.909 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 3.025 -0.634 19.849 20.088 hybrid contribution -0.671 0.667 -0.550 1.095 sum 2.353 0.033 19.299 19.442 Atomic orbital electron populations 1.22719 0.80506 1.02746 1.00115 1.87883 1.19955 1.26519 1.95503 1.21007 0.85195 0.86179 1.02485 1.20189 0.97130 0.98003 0.85379 1.66065 1.05195 1.15327 1.31260 1.28874 0.95354 1.02333 1.02270 1.84309 1.05406 1.64177 1.01094 1.25685 0.96584 1.16950 0.99256 1.16273 0.85511 0.77665 0.81631 1.90793 1.13984 1.50857 1.84416 1.48372 1.07128 1.71153 1.07230 1.22208 0.80397 1.00898 0.99948 1.23214 1.00568 1.03315 0.91726 1.21514 0.89876 0.97296 0.85061 0.90143 1.43849 1.83490 1.03833 0.99088 1.20832 1.00163 0.82248 0.95425 1.19163 1.32435 0.99761 0.88115 0.91194 1.25065 0.97162 0.98325 0.98647 1.70058 1.32690 1.30386 1.21435 0.86300 0.78303 0.79773 0.81922 1.20961 1.21585 1.20822 1.23230 1.00939 1.02444 0.76792 0.93464 0.89637 0.94241 0.91981 0.88897 0.77997 0.91307 0.91472 0.90200 0.90197 0.94767 0.93839 0.97903 0.93478 0.90917 0.90438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.39 11.01 101.05 1.11 1.51 16 2 O -0.38 -5.71 10.69 -35.23 -0.38 -6.09 16 3 C 0.13 1.83 5.74 36.00 0.21 2.04 16 4 C 0.13 1.90 6.42 -83.90 -0.54 1.36 16 5 N -0.46 -6.01 10.50 -11.54 -0.12 -6.14 16 6 C 0.01 0.06 12.22 51.75 0.63 0.70 16 7 S 0.19 1.89 18.69 -107.50 -2.01 -0.12 16 8 C -0.26 -3.71 6.40 -37.09 -0.24 -3.95 16 9 C 0.60 10.24 7.81 -12.85 -0.10 10.13 16 10 O -0.52 -10.27 14.53 5.20 0.08 -10.19 16 11 N -0.61 -9.82 3.32 -171.91 -0.57 -10.39 16 12 C 0.09 1.17 5.19 -3.06 -0.02 1.15 16 13 C -0.15 -2.20 6.49 -24.90 -0.16 -2.36 16 14 C 0.17 3.29 3.55 -65.67 -0.23 3.06 16 15 H 0.08 1.54 7.96 -51.93 -0.41 1.13 16 16 N -0.58 -13.67 2.96 -170.90 -0.51 -14.18 16 17 C 0.16 3.66 7.56 59.85 0.45 4.11 16 18 C -0.27 -6.93 9.60 -15.06 -0.14 -7.08 16 19 H 0.07 1.77 7.87 -52.49 -0.41 1.36 16 20 C 0.01 0.20 5.08 -17.43 -0.09 0.11 16 21 N -0.90 -25.48 10.77 55.49 0.60 -24.89 16 22 Si 0.91 21.12 29.58 -169.99 -5.03 16.10 16 23 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 24 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 25 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 26 C 0.09 1.68 6.46 -2.41 -0.02 1.67 16 27 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.09 1.40 6.02 -51.93 -0.31 1.08 16 32 H 0.20 1.06 8.06 -52.49 -0.42 0.64 16 33 H 0.07 0.77 6.88 -51.93 -0.36 0.41 16 34 H 0.07 0.77 7.01 -51.93 -0.36 0.41 16 35 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.08 1.23 6.47 -51.93 -0.34 0.90 16 37 H 0.03 0.88 7.33 -51.93 -0.38 0.50 16 38 H 0.04 1.08 7.38 -51.93 -0.38 0.70 16 39 H 0.00 0.05 6.37 -51.93 -0.33 -0.28 16 40 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 41 H 0.07 1.46 6.96 -51.93 -0.36 1.10 16 42 H 0.08 1.58 8.03 -51.93 -0.42 1.16 16 LS Contribution 351.24 15.07 5.29 5.29 Total: -1.00 -32.09 351.24 -7.52 -39.61 By element: Atomic # 1 Polarization: 4.28 SS G_CDS: -5.74 Total: -1.46 kcal Atomic # 6 Polarization: 11.57 SS G_CDS: 0.87 Total: 12.44 kcal Atomic # 7 Polarization: -54.99 SS G_CDS: -0.60 Total: -55.59 kcal Atomic # 8 Polarization: -15.98 SS G_CDS: -0.30 Total: -16.28 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.03 Total: 16.10 kcal Atomic # 16 Polarization: 1.89 SS G_CDS: -2.01 Total: -0.12 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.09 -7.52 -39.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972507258.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.003 kcal (2) G-P(sol) polarization free energy of solvation -32.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.609 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds