Wall clock time and date at job start Fri Apr 10 2020 14:49:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42907 * 114.00137 * 2 1 4 4 C 1.50693 * 109.47143 * 179.97438 * 3 2 1 5 5 N 1.30941 * 122.90985 * 270.03651 * 4 3 2 6 6 C 1.29424 * 117.36903 * 179.97438 * 5 4 3 7 7 S 1.70954 * 110.38984 * 0.02562 * 6 5 4 8 8 C 1.35664 * 122.90306 * 90.00327 * 4 3 2 9 9 C 1.46690 * 126.13128 * 359.76946 * 8 4 3 10 10 O 1.21686 * 119.99674 * 0.02562 * 9 8 4 11 11 N 1.34772 * 120.00314 * 180.02562 * 9 8 4 12 12 C 1.47028 * 125.64443 * 0.02562 * 11 9 8 13 13 C 1.54327 * 107.26556 * 181.02198 * 12 11 9 14 14 C 1.55153 * 102.94563 * 22.19333 * 13 12 11 15 15 H 1.09002 * 111.00467 * 82.60650 * 14 13 12 16 16 N 1.46496 * 111.00631 * 206.42053 * 14 13 12 17 17 C 1.46506 * 119.99741 * 59.99916 * 16 14 13 18 18 C 1.36935 * 120.00324 * 240.00393 * 16 14 13 19 19 H 1.07995 * 119.99933 * 23.24135 * 18 16 14 20 20 C 1.38813 * 119.99765 * 203.24573 * 18 16 14 21 21 N 1.31620 * 120.00387 * 13.76234 * 20 18 16 22 22 Si 1.86799 * 120.00024 * 193.75286 * 20 18 16 23 23 H 1.48500 * 109.46974 * 59.99978 * 22 20 18 24 24 H 1.48498 * 109.47367 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.47297 * 300.00605 * 22 20 18 26 26 C 1.47425 * 125.65134 * 179.71575 * 11 9 8 27 27 H 1.09001 * 109.47108 * 59.99986 * 1 2 3 28 28 H 1.09004 * 109.47335 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47571 * 300.00530 * 1 2 3 30 30 H 1.09002 * 109.47086 * 59.99543 * 3 2 1 31 31 H 1.09003 * 109.46761 * 300.00034 * 3 2 1 32 32 H 1.07996 * 124.80797 * 180.02562 * 6 5 4 33 33 H 1.09001 * 109.88415 * 300.43595 * 12 11 9 34 34 H 1.09002 * 109.88339 * 61.45324 * 12 11 9 35 35 H 1.09002 * 110.71709 * 140.55695 * 13 12 11 36 36 H 1.09002 * 110.72228 * 263.64909 * 13 12 11 37 37 H 1.08997 * 109.46975 * 95.16086 * 17 16 14 38 38 H 1.09004 * 109.47098 * 215.16146 * 17 16 14 39 39 H 1.09004 * 109.47163 * 335.15623 * 17 16 14 40 40 H 0.96998 * 120.00120 * 180.02562 * 21 20 18 41 41 H 1.08999 * 110.36274 * 274.75032 * 26 11 9 42 42 H 1.09006 * 110.36272 * 37.06863 * 26 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5124 1.1865 0.0006 5 7 4.2211 1.1298 1.1002 6 6 5.5053 1.0276 0.9758 7 16 5.9428 0.9939 -0.6765 8 6 4.2476 1.1281 -1.1381 9 6 3.7245 1.1647 -2.5081 10 8 2.5263 1.2556 -2.6996 11 7 4.5710 1.0976 -3.5546 12 6 6.0344 0.9857 -3.4672 13 6 6.5795 0.9671 -4.9108 14 6 5.4397 1.6388 -5.7214 15 1 5.5089 2.7252 -5.6663 16 7 5.4478 1.1849 -7.1142 17 6 5.2775 -0.2373 -7.4221 18 6 5.6147 2.0898 -8.1283 19 1 6.1010 3.0344 -7.9346 20 6 5.1587 1.7929 -9.4054 21 7 4.3367 0.7821 -9.5923 22 14 5.7112 2.8283 -10.8586 23 1 7.1897 2.7607 -10.9809 24 1 5.0870 2.3094 -12.1021 25 1 5.2961 4.2385 -10.6481 26 6 4.1826 1.1177 -4.9766 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.6885 1.8465 0.8900 31 1 1.6886 1.8464 -0.8900 32 1 6.2019 0.9715 1.7992 33 1 6.4402 1.8421 -2.9287 34 1 6.3057 0.0629 -2.9542 35 1 7.4987 1.5485 -4.9835 36 1 6.7446 -0.0563 -5.2477 37 1 4.2283 -0.4392 -7.6377 38 1 5.8832 -0.4961 -8.2906 39 1 5.5944 -0.8346 -6.5672 40 1 4.0184 0.5744 -10.4847 41 1 3.9278 0.1133 -5.3145 42 1 3.3427 1.7953 -5.1308 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972507258.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:49:26 Heat of formation + Delta-G solvation = -13.352268 kcal Electronic energy + Delta-G solvation = -25611.931038 eV Core-core repulsion = 21912.732745 eV Total energy + Delta-G solvation = -3699.198293 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.125 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.62026 -40.66263 -38.84541 -38.54036 -36.61718 -33.61916 -32.50234 -31.44355 -30.00784 -28.76387 -28.05591 -27.18967 -25.62002 -25.32285 -23.97294 -22.26910 -21.00004 -19.83262 -19.59660 -18.94911 -17.77942 -17.70348 -17.56366 -17.10368 -16.52831 -16.49999 -16.06516 -15.86805 -15.33905 -15.16905 -15.02625 -14.85476 -14.39373 -14.23089 -13.99423 -13.88710 -13.57322 -13.34690 -13.12032 -12.75443 -12.64080 -12.49908 -12.40433 -12.30697 -12.22627 -12.08167 -11.85923 -11.50290 -11.34198 -10.75052 -10.63510 -10.62675 -10.56310 -10.17502 -9.69714 -8.80200 -7.83461 -5.34059 -0.87548 0.11434 0.53735 1.26070 1.49474 1.50812 1.57636 1.73658 1.90565 2.51927 2.84282 3.22788 3.29575 3.44896 3.48653 3.82201 3.85467 3.99519 4.09611 4.11475 4.23714 4.34160 4.38456 4.44710 4.50480 4.54192 4.58333 4.76991 4.78484 4.79559 4.91200 4.94308 5.08961 5.18903 5.26410 5.40976 5.65386 5.71280 6.08629 6.29625 6.31717 6.53589 6.87564 7.13109 7.83271 8.27538 9.18936 Molecular weight = 325.12amu Principal moments of inertia in cm(-1) A = 0.019766 B = 0.003093 C = 0.002797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.205119 B = 9049.681617 C =10009.974625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.406 6.406 3 C 0.128 3.872 4 C 0.127 3.873 5 N -0.493 5.493 6 C 0.026 3.974 7 S 0.264 5.736 8 C -0.303 4.303 9 C 0.599 3.401 10 O -0.564 6.564 11 N -0.607 5.607 12 C 0.091 3.909 13 C -0.133 4.133 14 C 0.167 3.833 15 H 0.078 0.922 16 N -0.598 5.598 17 C 0.176 3.824 18 C -0.269 4.269 19 H 0.078 0.922 20 C -0.050 4.050 21 N -0.937 5.937 22 Si 0.970 3.030 23 H -0.274 1.274 24 H -0.298 1.298 25 H -0.276 1.276 26 C 0.101 3.899 27 H 0.039 0.961 28 H 0.099 0.901 29 H 0.061 0.939 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.250 0.750 33 H 0.097 0.903 34 H 0.092 0.908 35 H 0.104 0.896 36 H 0.077 0.923 37 H 0.000 1.000 38 H 0.019 0.981 39 H 0.036 0.964 40 H 0.248 0.752 41 H 0.055 0.945 42 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.839 0.037 22.690 23.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.325 6.325 3 C 0.050 3.950 4 C -0.013 4.013 5 N -0.208 5.208 6 C -0.268 4.268 7 S 0.522 5.478 8 C -0.428 4.428 9 C 0.387 3.613 10 O -0.445 6.445 11 N -0.340 5.340 12 C -0.032 4.032 13 C -0.172 4.172 14 C 0.058 3.942 15 H 0.097 0.903 16 N -0.319 5.319 17 C 0.031 3.969 18 C -0.399 4.399 19 H 0.095 0.905 20 C -0.245 4.245 21 N -0.583 5.583 22 Si 0.798 3.202 23 H -0.200 1.200 24 H -0.225 1.225 25 H -0.202 1.202 26 C -0.024 4.024 27 H 0.057 0.943 28 H 0.117 0.883 29 H 0.080 0.920 30 H 0.096 0.904 31 H 0.091 0.909 32 H 0.265 0.735 33 H 0.114 0.886 34 H 0.110 0.890 35 H 0.122 0.878 36 H 0.096 0.904 37 H 0.018 0.982 38 H 0.038 0.962 39 H 0.054 0.946 40 H 0.057 0.943 41 H 0.073 0.927 42 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 6.039 -0.209 22.514 23.311 hybrid contribution -1.559 0.546 -1.200 2.042 sum 4.480 0.337 21.314 21.782 Atomic orbital electron populations 1.22902 0.78939 1.03911 1.00788 1.87831 1.21859 1.27195 1.95628 1.20985 0.85947 0.85901 1.02205 1.20291 0.97329 0.97649 0.86079 1.66128 1.06627 1.17392 1.30620 1.29707 0.94854 0.98589 1.03658 1.83880 1.00922 1.62587 1.00395 1.25444 1.00092 1.19839 0.97426 1.16686 0.85091 0.76709 0.82793 1.90764 1.15872 1.52536 1.85321 1.48348 1.08617 1.71198 1.05801 1.22411 0.78092 1.03388 0.99301 1.23058 0.99611 1.02915 0.91644 1.21668 0.91580 0.97632 0.83360 0.90336 1.44017 1.83806 1.03535 1.00547 1.20516 0.97623 0.83025 0.95733 1.19562 1.31293 1.00141 0.88930 0.90457 1.25835 0.97723 0.99747 1.01217 1.70238 1.34424 1.32327 1.21280 0.85301 0.78057 0.78332 0.78478 1.19998 1.22476 1.20224 1.22808 1.00044 1.00588 0.78974 0.94277 0.88276 0.92043 0.90437 0.90868 0.73450 0.88555 0.89046 0.87769 0.90436 0.98179 0.96247 0.94589 0.94257 0.92716 0.93265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.68 11.01 113.37 1.25 1.93 16 2 O -0.41 -12.37 10.69 -148.98 -1.59 -13.96 16 3 C 0.13 3.67 5.74 71.23 0.41 4.08 16 4 C 0.13 3.52 6.42 42.09 0.27 3.79 16 5 N -0.49 -11.46 10.50 -190.41 -2.00 -13.46 16 6 C 0.03 0.37 12.22 130.60 1.60 1.96 16 7 S 0.26 4.05 18.69 -56.49 -1.06 2.99 16 8 C -0.30 -8.24 6.40 23.88 0.15 -8.08 16 9 C 0.60 20.45 7.81 86.45 0.68 21.13 16 10 O -0.56 -23.35 14.53 -4.31 -0.06 -23.41 16 11 N -0.61 -19.28 3.32 -816.02 -2.71 -22.00 16 12 C 0.09 2.07 5.19 86.73 0.45 2.52 16 13 C -0.13 -3.56 6.49 31.78 0.21 -3.35 16 14 C 0.17 6.24 3.55 46.46 0.16 6.40 16 15 H 0.08 2.95 7.96 -2.39 -0.02 2.93 16 16 N -0.60 -28.30 2.96 -694.60 -2.05 -30.36 16 17 C 0.18 8.35 7.56 127.77 0.97 9.31 16 18 C -0.27 -14.14 9.60 84.03 0.81 -13.33 16 19 H 0.08 3.86 7.87 -2.91 -0.02 3.84 16 20 C -0.05 -2.71 5.08 84.86 0.43 -2.28 16 21 N -0.94 -54.81 10.77 21.65 0.23 -54.57 16 22 Si 0.97 43.92 29.58 68.60 2.03 45.95 16 23 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 24 H -0.30 -13.79 7.11 99.48 0.71 -13.08 16 25 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 26 C 0.10 3.88 6.46 86.93 0.56 4.44 16 27 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 29 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.07 2.34 6.02 -2.39 -0.01 2.33 16 32 H 0.25 1.04 8.06 -2.91 -0.02 1.02 16 33 H 0.10 1.70 6.88 -2.39 -0.02 1.69 16 34 H 0.09 1.70 7.01 -2.39 -0.02 1.68 16 35 H 0.10 2.35 8.14 -2.39 -0.02 2.34 16 36 H 0.08 2.16 6.47 -2.39 -0.02 2.15 16 37 H 0.00 -0.01 7.33 -2.39 -0.02 -0.02 16 38 H 0.02 0.98 7.38 -2.38 -0.02 0.96 16 39 H 0.04 1.43 6.37 -2.38 -0.02 1.41 16 40 H 0.25 14.23 8.31 -92.71 -0.77 13.46 16 41 H 0.05 2.29 6.96 -2.39 -0.02 2.27 16 42 H 0.05 2.13 8.03 -2.38 -0.02 2.11 16 Total: -1.00 -73.95 351.24 1.76 -72.19 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: 1.04 Total: 8.11 kcal Atomic # 6 Polarization: 20.57 SS G_CDS: 7.94 Total: 28.51 kcal Atomic # 7 Polarization: -113.86 SS G_CDS: -6.53 Total: -120.39 kcal Atomic # 8 Polarization: -35.71 SS G_CDS: -1.65 Total: -37.37 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Atomic # 16 Polarization: 4.05 SS G_CDS: -1.06 Total: 2.99 kcal Total: -73.95 1.76 -72.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972507258.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.834 kcal (2) G-P(sol) polarization free energy of solvation -73.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds