Wall clock time and date at job start Fri Apr 10 2020 14:49:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42894 * 114.00171 * 2 1 4 4 C 1.50709 * 109.47239 * 180.02562 * 3 2 1 5 5 N 1.28644 * 124.72030 * 90.00222 * 4 3 2 6 6 C 1.33560 * 115.76675 * 180.02562 * 5 4 3 7 7 C 1.47263 * 123.14034 * 180.02562 * 6 5 4 8 8 O 1.21632 * 120.00069 * 180.02562 * 7 6 5 9 9 N 1.34780 * 120.00098 * 0.02562 * 7 6 5 10 10 C 1.47015 * 125.64926 * 0.02904 * 9 7 6 11 11 C 1.54322 * 107.27635 * 178.90071 * 10 9 7 12 12 C 1.55159 * 102.93911 * 337.80736 * 11 10 9 13 13 H 1.08996 * 111.04211 * 277.41022 * 12 11 10 14 14 N 1.46501 * 111.00399 * 153.57046 * 12 11 10 15 15 C 1.46504 * 120.00269 * 306.34994 * 14 12 11 16 16 C 1.36933 * 119.99725 * 126.35168 * 14 12 11 17 17 H 1.07999 * 120.00603 * 23.30754 * 16 14 12 18 18 C 1.38817 * 120.00066 * 203.31391 * 16 14 12 19 19 N 1.31622 * 120.00050 * 14.00226 * 18 16 14 20 20 Si 1.86798 * 120.00152 * 194.01081 * 18 16 14 21 21 H 1.48493 * 109.47533 * 89.99397 * 20 18 16 22 22 H 1.48503 * 109.46952 * 209.99819 * 20 18 16 23 23 H 1.48504 * 109.47178 * 329.99393 * 20 18 16 24 24 C 1.47429 * 125.64990 * 179.97438 * 9 7 6 25 25 C 1.35203 * 113.71468 * 0.26644 * 6 5 4 26 26 S 1.70770 * 124.72048 * 270.03970 * 4 3 2 27 27 H 1.08997 * 109.46933 * 299.99817 * 1 2 3 28 28 H 1.08998 * 109.47149 * 59.99917 * 1 2 3 29 29 H 1.09007 * 109.46942 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47463 * 60.00031 * 3 2 1 31 31 H 1.09004 * 109.47511 * 300.00239 * 3 2 1 32 32 H 1.09006 * 109.88306 * 298.32200 * 10 9 7 33 33 H 1.09003 * 109.88504 * 59.48654 * 10 9 7 34 34 H 1.09001 * 110.72089 * 96.16701 * 11 10 9 35 35 H 1.08998 * 110.72536 * 219.44060 * 11 10 9 36 36 H 1.09003 * 109.46955 * 95.16881 * 15 14 12 37 37 H 1.09000 * 109.46790 * 215.16727 * 15 14 12 38 38 H 1.08999 * 109.46857 * 335.17099 * 15 14 12 39 39 H 0.96992 * 120.00050 * 180.02562 * 19 18 16 40 40 H 1.08997 * 110.36656 * 323.01035 * 24 9 7 41 41 H 1.08996 * 110.36048 * 85.32603 * 24 9 7 42 42 H 1.07998 * 125.58208 * 179.73307 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5126 1.1864 -0.0006 5 7 4.2426 1.1287 -1.0583 6 6 5.5578 1.0240 -0.8510 7 6 6.5415 0.9467 -1.9442 8 8 7.7271 0.8517 -1.6899 9 7 6.1280 0.9813 -3.2265 10 6 4.7322 1.0939 -3.6740 11 6 4.7464 1.1227 -5.2169 12 6 6.1882 1.5945 -5.5423 13 1 6.2680 2.6798 -5.4810 14 7 6.6137 1.1130 -6.8588 15 6 6.5364 -0.3151 -7.1767 16 6 7.0838 1.9977 -7.7923 17 1 7.4952 2.9458 -7.4788 18 6 7.0315 1.6761 -9.1417 19 7 6.2939 0.6650 -9.5491 20 14 8.0080 2.6781 -10.3793 21 1 9.3580 2.0819 -10.5441 22 1 7.3024 2.6746 -11.6860 23 1 8.1399 4.0746 -9.8917 24 6 7.0007 0.9135 -4.4129 25 6 5.9012 0.9903 0.4562 26 16 4.4827 1.1083 1.4026 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.6886 1.8464 0.8900 31 1 1.6886 1.8464 -0.8900 32 1 4.1603 0.2342 -3.3245 33 1 4.2929 2.0147 -3.2902 34 1 4.5655 0.1274 -5.6229 35 1 4.0129 1.8342 -5.5962 36 1 5.6001 -0.5217 -7.6952 37 1 7.3746 -0.5907 -7.8167 38 1 6.5769 -0.8952 -6.2548 39 1 6.2576 0.4400 -10.4919 40 1 7.9286 1.4563 -4.2327 41 1 7.2113 -0.1245 -4.6699 42 1 6.9073 0.9049 0.8397 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000980530324.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:49:50 Heat of formation + Delta-G solvation = -14.559819 kcal Electronic energy + Delta-G solvation = -25271.136023 eV Core-core repulsion = 21571.885366 eV Total energy + Delta-G solvation = -3699.250657 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.125 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.77162 -40.24527 -38.96879 -38.54556 -36.59404 -33.52196 -32.65296 -31.35748 -29.67982 -29.16390 -28.08264 -27.03245 -26.39382 -24.62027 -23.80028 -21.88221 -20.98637 -20.62987 -19.45039 -18.96496 -17.66133 -17.55310 -17.31205 -17.17442 -16.64204 -16.53529 -16.24657 -15.88448 -15.19972 -15.07831 -14.86032 -14.76586 -14.41952 -14.25540 -13.91361 -13.59377 -13.48362 -13.12977 -13.06494 -12.91701 -12.82968 -12.52827 -12.40496 -12.32865 -12.18452 -12.10006 -11.85648 -11.50747 -11.33663 -10.85124 -10.76169 -10.66195 -10.62759 -10.08350 -9.69428 -8.81031 -7.84562 -5.34546 -0.61620 0.18425 0.50652 0.76930 1.47118 1.49125 1.57291 1.89711 2.15075 2.50579 2.63877 3.16377 3.27934 3.51522 3.62433 3.87792 3.91284 4.07297 4.16682 4.19866 4.21906 4.32429 4.40844 4.45630 4.58120 4.61715 4.65191 4.73312 4.81554 4.93458 4.94880 4.97863 5.15981 5.19612 5.26211 5.39546 5.63367 5.68225 6.12208 6.29554 6.31578 6.43368 6.94360 7.12041 7.81259 8.26603 9.18353 Molecular weight = 325.12amu Principal moments of inertia in cm(-1) A = 0.019516 B = 0.002816 C = 0.002561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.401511 B = 9940.981121 C =10929.834023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.411 6.411 3 C 0.139 3.861 4 C -0.004 4.004 5 N -0.442 5.442 6 C -0.012 4.012 7 C 0.596 3.404 8 O -0.578 6.578 9 N -0.598 5.598 10 C 0.136 3.864 11 C -0.142 4.142 12 C 0.169 3.831 13 H 0.076 0.924 14 N -0.600 5.600 15 C 0.177 3.823 16 C -0.270 4.270 17 H 0.071 0.929 18 C -0.047 4.047 19 N -0.933 5.933 20 Si 0.970 3.030 21 H -0.288 1.288 22 H -0.293 1.293 23 H -0.268 1.268 24 C 0.097 3.903 25 C -0.231 4.231 26 S 0.331 5.669 27 H 0.065 0.935 28 H 0.051 0.949 29 H 0.094 0.906 30 H 0.109 0.891 31 H 0.086 0.914 32 H 0.073 0.927 33 H 0.082 0.918 34 H 0.064 0.936 35 H 0.084 0.916 36 H 0.013 0.987 37 H 0.014 0.986 38 H 0.026 0.974 39 H 0.250 0.750 40 H 0.061 0.939 41 H 0.060 0.940 42 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.149 1.559 26.161 29.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.331 6.331 3 C 0.059 3.941 4 C -0.283 4.283 5 N -0.160 5.160 6 C -0.147 4.147 7 C 0.384 3.616 8 O -0.459 6.459 9 N -0.329 5.329 10 C 0.014 3.986 11 C -0.182 4.182 12 C 0.060 3.940 13 H 0.094 0.906 14 N -0.321 5.321 15 C 0.032 3.968 16 C -0.400 4.400 17 H 0.089 0.911 18 C -0.242 4.242 19 N -0.579 5.579 20 Si 0.798 3.202 21 H -0.215 1.215 22 H -0.219 1.219 23 H -0.193 1.193 24 C -0.028 4.028 25 C -0.374 4.374 26 S 0.589 5.411 27 H 0.084 0.916 28 H 0.069 0.931 29 H 0.112 0.888 30 H 0.126 0.874 31 H 0.104 0.896 32 H 0.091 0.909 33 H 0.100 0.900 34 H 0.083 0.917 35 H 0.102 0.898 36 H 0.031 0.969 37 H 0.033 0.967 38 H 0.045 0.955 39 H 0.059 0.941 40 H 0.080 0.920 41 H 0.078 0.922 42 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -12.930 1.319 26.702 29.697 hybrid contribution 1.278 0.246 -2.103 2.473 sum -11.652 1.566 24.598 27.264 Atomic orbital electron populations 1.22981 0.78246 1.04089 1.01601 1.87908 1.22226 1.27129 1.95797 1.20984 0.82588 0.86028 1.04455 1.27205 1.02209 1.06129 0.92761 1.67030 1.02754 1.13697 1.32509 1.20021 0.90118 1.11390 0.93221 1.17176 0.86712 0.76527 0.81230 1.90766 1.17782 1.53603 1.83794 1.48300 1.10187 1.69895 1.04472 1.21974 0.80716 1.02755 0.93190 1.23127 0.98830 1.02334 0.93916 1.21495 0.91846 0.96897 0.83739 0.90620 1.43960 1.74090 1.03565 1.10466 1.20512 0.98733 0.82815 0.94693 1.19537 1.33232 1.00258 0.86986 0.91128 1.25766 0.99921 0.99775 0.98769 1.70220 1.41201 1.31882 1.14568 0.85234 0.77928 0.78791 0.78266 1.21523 1.21939 1.19289 1.22728 0.94266 1.00942 0.84833 1.26979 1.08425 1.05203 0.96796 1.82356 0.91042 1.59968 1.07740 0.91630 0.93066 0.88779 0.87351 0.89619 0.90868 0.89981 0.91715 0.89776 0.96856 0.96694 0.95527 0.94125 0.92004 0.92190 0.78538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 113.37 1.25 1.49 16 2 O -0.41 -6.67 10.69 -148.98 -1.59 -8.26 16 3 C 0.14 1.77 6.51 71.24 0.46 2.24 16 4 C 0.00 -0.08 6.97 88.58 0.62 0.54 16 5 N -0.44 -11.28 7.66 -180.83 -1.38 -12.66 16 6 C -0.01 -0.34 6.62 40.56 0.27 -0.07 16 7 C 0.60 21.50 7.83 86.62 0.68 22.18 16 8 O -0.58 -23.98 16.97 -4.13 -0.07 -24.05 16 9 N -0.60 -21.50 3.33 -815.85 -2.71 -24.22 16 10 C 0.14 4.29 5.46 86.73 0.47 4.76 16 11 C -0.14 -5.09 6.51 31.78 0.21 -4.88 16 12 C 0.17 7.09 3.54 46.38 0.16 7.26 16 13 H 0.08 3.19 7.95 -2.39 -0.02 3.17 16 14 N -0.60 -30.40 2.96 -695.02 -2.05 -32.45 16 15 C 0.18 8.91 7.61 127.77 0.97 9.88 16 16 C -0.27 -14.95 9.60 84.04 0.81 -14.14 16 17 H 0.07 3.81 7.86 -2.91 -0.02 3.78 16 18 C -0.05 -2.61 5.08 84.86 0.43 -2.18 16 19 N -0.93 -55.04 10.79 21.65 0.23 -54.81 16 20 Si 0.97 45.35 29.58 68.60 2.03 47.37 16 21 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 22 H -0.29 -13.68 7.11 99.48 0.71 -12.98 16 23 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 24 C 0.10 3.88 6.46 86.85 0.56 4.44 16 25 C -0.23 -4.93 10.62 67.12 0.71 -4.22 16 26 S 0.33 4.36 22.92 -56.49 -1.29 3.07 16 27 H 0.07 0.29 8.14 -2.39 -0.02 0.27 16 28 H 0.05 0.41 8.14 -2.39 -0.02 0.39 16 29 H 0.09 0.74 8.14 -2.38 -0.02 0.72 16 30 H 0.11 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.09 1.06 8.14 -2.38 -0.02 1.04 16 32 H 0.07 2.26 7.64 -2.38 -0.02 2.24 16 33 H 0.08 2.40 7.52 -2.39 -0.02 2.38 16 34 H 0.06 2.46 7.08 -2.39 -0.02 2.45 16 35 H 0.08 2.87 8.14 -2.39 -0.02 2.85 16 36 H 0.01 0.72 7.33 -2.39 -0.02 0.70 16 37 H 0.01 0.79 7.39 -2.39 -0.02 0.77 16 38 H 0.03 1.18 6.33 -2.39 -0.02 1.16 16 39 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 40 H 0.06 2.59 8.04 -2.39 -0.02 2.57 16 41 H 0.06 2.50 6.33 -2.39 -0.02 2.49 16 42 H 0.20 3.80 8.03 -2.91 -0.02 3.78 16 Total: -1.00 -72.57 358.66 1.79 -70.78 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: 1.03 Total: 7.93 kcal Atomic # 6 Polarization: 19.69 SS G_CDS: 7.60 Total: 27.29 kcal Atomic # 7 Polarization: -118.22 SS G_CDS: -5.92 Total: -124.14 kcal Atomic # 8 Polarization: -30.64 SS G_CDS: -1.66 Total: -32.31 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.37 kcal Atomic # 16 Polarization: 4.36 SS G_CDS: -1.29 Total: 3.07 kcal Total: -72.57 1.79 -70.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980530324.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.219 kcal (2) G-P(sol) polarization free energy of solvation -72.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds