Wall clock time and date at job start Fri Apr 10 2020 14:49:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42901 * 114.00076 * 2 1 4 4 C 1.50703 * 109.47180 * 180.02562 * 3 2 1 5 5 N 1.29431 * 124.80351 * 90.02651 * 4 3 2 6 6 C 1.30944 * 117.36398 * 180.02562 * 5 4 3 7 7 C 1.35668 * 114.18887 * 359.97438 * 6 5 4 8 8 C 1.46680 * 126.12857 * 180.02562 * 7 6 5 9 9 O 1.21694 * 119.99941 * 0.02562 * 8 7 6 10 10 N 1.34773 * 120.00267 * 179.97438 * 8 7 6 11 11 C 1.47022 * 125.64468 * 0.03907 * 10 8 7 12 12 C 1.54327 * 107.27369 * 181.02364 * 11 10 8 13 13 C 1.55162 * 102.93707 * 22.19549 * 12 11 10 14 14 H 1.09004 * 111.03529 * 82.58720 * 13 12 11 15 15 N 1.46505 * 111.00454 * 206.42234 * 13 12 11 16 16 C 1.46498 * 119.99770 * 53.65093 * 15 13 12 17 17 C 1.36929 * 120.00023 * 233.65489 * 15 13 12 18 18 H 1.08001 * 120.00398 * 340.18532 * 17 15 13 19 19 C 1.38811 * 120.00175 * 159.91502 * 17 15 13 20 20 N 1.31615 * 119.99907 * 347.51904 * 19 17 15 21 21 Si 1.86799 * 120.00296 * 167.50951 * 19 17 15 22 22 H 1.48504 * 109.46885 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.47148 * 120.00373 * 21 19 17 24 24 H 1.48502 * 109.47586 * 240.00211 * 21 19 17 25 25 C 1.47421 * 125.65371 * 180.02562 * 10 8 7 26 26 S 1.70951 * 124.80395 * 270.34148 * 4 3 2 27 27 H 1.09009 * 109.46672 * 300.00274 * 1 2 3 28 28 H 1.08994 * 109.46946 * 59.99616 * 1 2 3 29 29 H 1.08991 * 109.47250 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47041 * 60.00248 * 3 2 1 31 31 H 1.08999 * 109.47267 * 299.99958 * 3 2 1 32 32 H 1.08000 * 122.90509 * 180.02562 * 6 5 4 33 33 H 1.08998 * 109.88888 * 300.44219 * 11 10 8 34 34 H 1.08997 * 109.88310 * 61.45619 * 11 10 8 35 35 H 1.08997 * 110.72016 * 263.83770 * 12 11 10 36 36 H 1.08994 * 110.72078 * 140.55537 * 12 11 10 37 37 H 1.09000 * 109.47115 * 264.84279 * 16 15 13 38 38 H 1.08997 * 109.47201 * 24.84219 * 16 15 13 39 39 H 1.09001 * 109.47050 * 144.84495 * 16 15 13 40 40 H 0.97000 * 120.00684 * 179.97438 * 20 19 17 41 41 H 1.08998 * 110.36529 * 37.06261 * 25 10 8 42 42 H 1.09003 * 110.36380 * 274.74749 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5126 1.1865 -0.0006 5 7 4.2486 1.1288 -1.0637 6 6 5.5430 1.0257 -0.8947 7 6 5.9332 0.9940 0.4042 8 6 7.3128 0.8845 0.8904 9 8 8.2333 0.8125 0.0977 10 7 7.5610 0.8646 2.2149 11 6 6.5482 0.9440 3.2777 12 6 7.2964 0.9112 4.6270 13 6 8.7235 1.3854 4.2446 14 1 8.7746 2.4732 4.1966 15 7 9.7205 0.8564 5.1786 16 6 9.7905 -0.5839 5.4371 17 6 10.5869 1.7082 5.8101 18 1 10.7647 2.6943 5.4071 19 6 11.2324 1.3064 6.9714 20 7 10.8382 0.2201 7.6013 21 14 12.6609 2.3073 7.6402 22 1 12.9053 3.4740 6.7545 23 1 12.3336 2.7846 9.0077 24 1 13.8790 1.4594 7.6902 25 6 8.8929 0.7594 2.8381 26 16 4.4852 1.1008 1.4026 27 1 -0.3633 0.5139 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 1.6886 1.8464 0.8900 31 1 1.6887 1.8464 -0.8900 32 1 6.2397 0.9713 -1.7182 33 1 5.9879 1.8745 3.1871 34 1 5.8693 0.0943 3.2070 35 1 7.3215 -0.1014 5.0296 36 1 6.8392 1.5990 5.3383 37 1 9.2124 -0.8213 6.3301 38 1 9.3815 -1.1263 4.5847 39 1 10.8297 -0.8758 5.5887 40 1 11.2894 -0.0609 8.4127 41 1 9.6277 1.3193 2.2595 42 1 9.1911 -0.2857 2.9215 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000980557374.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:49:47 Heat of formation + Delta-G solvation = 7.599161 kcal Electronic energy + Delta-G solvation = -24946.647639 eV Core-core repulsion = 21248.357868 eV Total energy + Delta-G solvation = -3698.289771 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.125 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.33039 -39.57502 -38.18469 -37.40574 -34.93729 -32.13386 -31.49219 -29.95269 -29.04052 -27.80552 -26.56998 -26.12229 -24.56271 -23.56660 -22.47247 -21.31522 -19.43783 -19.01915 -18.50854 -17.16305 -17.02836 -16.78580 -16.26810 -15.96455 -15.92526 -15.21422 -14.95927 -14.51998 -14.33684 -13.88670 -13.54609 -13.45460 -13.13533 -12.92072 -12.69254 -12.57270 -12.48510 -12.09783 -11.92090 -11.86284 -11.43945 -10.99515 -10.87672 -10.58602 -10.52244 -10.33375 -10.31769 -10.08859 -10.00259 -9.94875 -9.74803 -9.64388 -9.26460 -8.65718 -8.47926 -6.91334 -5.81357 -3.26940 -0.02514 0.93586 1.37175 2.21270 2.96157 3.11059 3.32131 3.33833 3.41824 3.43536 3.95287 4.41387 4.46469 4.48484 4.82130 4.85666 4.87785 4.91903 4.97177 5.07842 5.12982 5.23123 5.24144 5.37279 5.50775 5.63993 5.79632 5.85626 5.89185 6.17650 6.25984 6.37642 6.52317 6.54439 6.70928 6.76978 7.32871 7.35748 7.54475 7.64330 7.74589 8.09417 8.28120 9.13322 9.75251 10.22003 11.23384 Molecular weight = 325.12amu Principal moments of inertia in cm(-1) A = 0.026438 B = 0.002574 C = 0.002439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.821927 B =10874.816857 C =11475.060752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.383 6.383 3 C 0.139 3.861 4 C 0.021 3.979 5 N -0.462 5.462 6 C 0.111 3.889 7 C -0.277 4.277 8 C 0.604 3.396 9 O -0.530 6.530 10 N -0.605 5.605 11 C 0.088 3.912 12 C -0.145 4.145 13 C 0.174 3.826 14 H 0.081 0.919 15 N -0.585 5.585 16 C 0.160 3.840 17 C -0.259 4.259 18 H 0.072 0.928 19 C 0.003 3.997 20 N -0.906 5.906 21 Si 0.908 3.092 22 H -0.278 1.278 23 H -0.290 1.290 24 H -0.289 1.289 25 C 0.086 3.914 26 S 0.219 5.781 27 H 0.046 0.954 28 H 0.046 0.954 29 H 0.091 0.909 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.190 0.810 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.032 0.968 38 H 0.000 1.000 39 H 0.048 0.952 40 H 0.253 0.747 41 H 0.077 0.923 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.371 1.547 -11.684 23.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.301 6.301 3 C 0.059 3.941 4 C -0.253 4.253 5 N -0.177 5.177 6 C -0.047 4.047 7 C -0.401 4.401 8 C 0.390 3.610 9 O -0.409 6.409 10 N -0.338 5.338 11 C -0.036 4.036 12 C -0.185 4.185 13 C 0.063 3.937 14 H 0.099 0.901 15 N -0.305 5.305 16 C 0.015 3.985 17 C -0.388 4.388 18 H 0.090 0.910 19 C -0.195 4.195 20 N -0.551 5.551 21 Si 0.737 3.263 22 H -0.203 1.203 23 H -0.217 1.217 24 H -0.215 1.215 25 C -0.038 4.038 26 S 0.476 5.524 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.109 0.891 30 H 0.093 0.907 31 H 0.100 0.900 32 H 0.206 0.794 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.099 0.901 36 H 0.100 0.900 37 H 0.051 0.949 38 H 0.019 0.981 39 H 0.067 0.933 40 H 0.063 0.937 41 H 0.096 0.904 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -20.221 1.285 -11.392 23.245 hybrid contribution 1.005 0.545 -0.291 1.179 sum -19.217 1.830 -11.683 22.564 Atomic orbital electron populations 1.22818 0.79882 1.03417 1.00383 1.87971 1.20400 1.26206 1.95530 1.20805 0.84546 0.86146 1.02595 1.27181 1.00824 1.03816 0.93443 1.66191 1.04835 1.15013 1.31702 1.22144 0.90634 0.96382 0.95543 1.25946 0.98263 1.17975 0.97959 1.16303 0.85857 0.77552 0.81275 1.90845 1.44370 1.51349 1.54308 1.48322 1.10361 1.71054 1.04045 1.22244 0.91426 1.00983 0.88992 1.23218 0.98226 1.03607 0.93498 1.21401 0.87568 0.97126 0.87619 0.90132 1.43858 1.35375 1.03431 1.47881 1.20854 1.00667 0.81912 0.95022 1.19291 1.17694 0.97774 1.04076 0.90986 1.24987 1.00376 0.98050 0.96112 1.70090 1.41276 1.25377 1.18377 0.86138 0.82190 0.79392 0.78532 1.20260 1.21704 1.21538 1.23123 0.82353 1.02345 0.95955 1.84275 0.95642 1.63317 1.09120 0.93578 0.93574 0.89051 0.90651 0.89989 0.79353 0.91298 0.91415 0.90102 0.90046 0.94930 0.98134 0.93323 0.93672 0.90440 0.90863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.28 16 2 O -0.38 -3.58 10.69 -35.23 -0.38 -3.96 16 3 C 0.14 1.12 6.51 36.01 0.23 1.35 16 4 C 0.02 0.23 7.02 -13.29 -0.09 0.14 16 5 N -0.46 -5.93 10.51 -11.50 -0.12 -6.05 16 6 C 0.11 1.46 11.09 -18.85 -0.21 1.25 16 7 C -0.28 -3.78 6.40 -37.09 -0.24 -4.02 16 8 C 0.60 9.94 7.82 -12.85 -0.10 9.84 16 9 O -0.53 -10.32 17.12 5.19 0.09 -10.23 16 10 N -0.60 -9.62 3.33 -172.08 -0.57 -10.19 16 11 C 0.09 1.17 5.19 -3.06 -0.02 1.15 16 12 C -0.15 -2.27 6.51 -24.89 -0.16 -2.44 16 13 C 0.17 3.30 3.54 -65.79 -0.23 3.06 16 14 H 0.08 1.53 7.94 -51.93 -0.41 1.12 16 15 N -0.59 -13.76 2.96 -171.04 -0.51 -14.27 16 16 C 0.16 3.72 7.59 59.85 0.45 4.17 16 17 C -0.26 -6.78 9.65 -15.06 -0.15 -6.93 16 18 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 19 C 0.00 0.08 5.12 -17.43 -0.09 0.00 16 20 N -0.91 -25.37 10.51 55.49 0.58 -24.78 16 21 Si 0.91 21.25 29.57 -169.99 -5.03 16.22 16 22 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 23 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 24 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 25 C 0.09 1.55 6.46 -2.54 -0.02 1.53 16 26 S 0.22 2.31 18.64 -107.50 -2.00 0.31 16 27 H 0.05 0.18 8.14 -51.92 -0.42 -0.24 16 28 H 0.05 0.20 8.14 -51.93 -0.42 -0.23 16 29 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.19 2.27 8.06 -52.49 -0.42 1.85 16 33 H 0.07 0.79 6.88 -51.93 -0.36 0.43 16 34 H 0.07 0.81 7.00 -51.93 -0.36 0.44 16 35 H 0.08 1.35 7.08 -51.93 -0.37 0.98 16 36 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 37 H 0.03 0.81 7.42 -51.93 -0.39 0.43 16 38 H 0.00 0.00 6.34 -51.93 -0.33 -0.32 16 39 H 0.05 1.24 7.12 -51.93 -0.37 0.87 16 40 H 0.25 6.88 8.31 -40.82 -0.34 6.54 16 41 H 0.08 1.47 8.04 -51.93 -0.42 1.05 16 42 H 0.07 1.38 6.33 -51.93 -0.33 1.05 16 LS Contribution 355.76 15.07 5.36 5.36 Total: -1.00 -31.80 355.76 -7.91 -39.71 By element: Atomic # 1 Polarization: 3.32 SS G_CDS: -5.84 Total: -2.51 kcal Atomic # 6 Polarization: 9.90 SS G_CDS: 0.50 Total: 10.39 kcal Atomic # 7 Polarization: -54.68 SS G_CDS: -0.62 Total: -55.30 kcal Atomic # 8 Polarization: -13.90 SS G_CDS: -0.29 Total: -14.19 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.03 Total: 16.22 kcal Atomic # 16 Polarization: 2.31 SS G_CDS: -2.00 Total: 0.31 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -31.80 -7.91 -39.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980557374.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.311 kcal (2) G-P(sol) polarization free energy of solvation -31.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.712 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds