Wall clock time and date at job start Fri Apr 10 2020 14:49:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42901 * 114.00076 * 2 1 4 4 C 1.50703 * 109.47180 * 180.02562 * 3 2 1 5 5 N 1.29431 * 124.80351 * 90.02651 * 4 3 2 6 6 C 1.30944 * 117.36398 * 180.02562 * 5 4 3 7 7 C 1.35668 * 114.18887 * 359.97438 * 6 5 4 8 8 C 1.46680 * 126.12857 * 180.02562 * 7 6 5 9 9 O 1.21694 * 119.99941 * 0.02562 * 8 7 6 10 10 N 1.34773 * 120.00267 * 179.97438 * 8 7 6 11 11 C 1.47022 * 125.64468 * 0.03907 * 10 8 7 12 12 C 1.54327 * 107.27369 * 181.02364 * 11 10 8 13 13 C 1.55162 * 102.93707 * 22.19549 * 12 11 10 14 14 H 1.09004 * 111.03529 * 82.58720 * 13 12 11 15 15 N 1.46505 * 111.00454 * 206.42234 * 13 12 11 16 16 C 1.46498 * 119.99770 * 53.65093 * 15 13 12 17 17 C 1.36929 * 120.00023 * 233.65489 * 15 13 12 18 18 H 1.08001 * 120.00398 * 340.18532 * 17 15 13 19 19 C 1.38811 * 120.00175 * 159.91502 * 17 15 13 20 20 N 1.31615 * 119.99907 * 347.51904 * 19 17 15 21 21 Si 1.86799 * 120.00296 * 167.50951 * 19 17 15 22 22 H 1.48504 * 109.46885 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.47148 * 120.00373 * 21 19 17 24 24 H 1.48502 * 109.47586 * 240.00211 * 21 19 17 25 25 C 1.47421 * 125.65371 * 180.02562 * 10 8 7 26 26 S 1.70951 * 124.80395 * 270.34148 * 4 3 2 27 27 H 1.09009 * 109.46672 * 300.00274 * 1 2 3 28 28 H 1.08994 * 109.46946 * 59.99616 * 1 2 3 29 29 H 1.08991 * 109.47250 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47041 * 60.00248 * 3 2 1 31 31 H 1.08999 * 109.47267 * 299.99958 * 3 2 1 32 32 H 1.08000 * 122.90509 * 180.02562 * 6 5 4 33 33 H 1.08998 * 109.88888 * 300.44219 * 11 10 8 34 34 H 1.08997 * 109.88310 * 61.45619 * 11 10 8 35 35 H 1.08997 * 110.72016 * 263.83770 * 12 11 10 36 36 H 1.08994 * 110.72078 * 140.55537 * 12 11 10 37 37 H 1.09000 * 109.47115 * 264.84279 * 16 15 13 38 38 H 1.08997 * 109.47201 * 24.84219 * 16 15 13 39 39 H 1.09001 * 109.47050 * 144.84495 * 16 15 13 40 40 H 0.97000 * 120.00684 * 179.97438 * 20 19 17 41 41 H 1.08998 * 110.36529 * 37.06261 * 25 10 8 42 42 H 1.09003 * 110.36380 * 274.74749 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5126 1.1865 -0.0006 5 7 4.2486 1.1288 -1.0637 6 6 5.5430 1.0257 -0.8947 7 6 5.9332 0.9940 0.4042 8 6 7.3128 0.8845 0.8904 9 8 8.2333 0.8125 0.0977 10 7 7.5610 0.8646 2.2149 11 6 6.5482 0.9440 3.2777 12 6 7.2964 0.9112 4.6270 13 6 8.7235 1.3854 4.2446 14 1 8.7746 2.4732 4.1966 15 7 9.7205 0.8564 5.1786 16 6 9.7905 -0.5839 5.4371 17 6 10.5869 1.7082 5.8101 18 1 10.7647 2.6943 5.4071 19 6 11.2324 1.3064 6.9714 20 7 10.8382 0.2201 7.6013 21 14 12.6609 2.3073 7.6402 22 1 12.9053 3.4740 6.7545 23 1 12.3336 2.7846 9.0077 24 1 13.8790 1.4594 7.6902 25 6 8.8929 0.7594 2.8381 26 16 4.4852 1.1008 1.4026 27 1 -0.3633 0.5139 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 1.6886 1.8464 0.8900 31 1 1.6887 1.8464 -0.8900 32 1 6.2397 0.9713 -1.7182 33 1 5.9879 1.8745 3.1871 34 1 5.8693 0.0943 3.2070 35 1 7.3215 -0.1014 5.0296 36 1 6.8392 1.5990 5.3383 37 1 9.2124 -0.8213 6.3301 38 1 9.3815 -1.1263 4.5847 39 1 10.8297 -0.8758 5.5887 40 1 11.2894 -0.0609 8.4127 41 1 9.6277 1.3193 2.2595 42 1 9.1911 -0.2857 2.9215 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000980557374.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:49:42 Heat of formation + Delta-G solvation = -14.121224 kcal Electronic energy + Delta-G solvation = -24947.589506 eV Core-core repulsion = 21248.357868 eV Total energy + Delta-G solvation = -3699.231638 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.125 amu Computer time = 2.51 seconds Orbital eigenvalues (eV) -41.46359 -40.68455 -38.99104 -38.64269 -36.64927 -33.65239 -32.64456 -31.42839 -30.08592 -29.02666 -28.07355 -27.13511 -25.71692 -24.76517 -23.95903 -22.43537 -21.00768 -19.97402 -19.60445 -18.97616 -17.86196 -17.68427 -17.58489 -17.18506 -16.59522 -16.50721 -16.07287 -15.85906 -15.43386 -15.18781 -15.00906 -14.90018 -14.39607 -14.30331 -13.97004 -13.67047 -13.56846 -13.26795 -13.12027 -12.83841 -12.73546 -12.50367 -12.39668 -12.36976 -12.17610 -12.07301 -11.85839 -11.54704 -11.41767 -10.83993 -10.68811 -10.65075 -10.61161 -10.23642 -9.75039 -8.83910 -7.83540 -5.30209 -0.97139 0.03444 0.45449 1.20963 1.47309 1.50033 1.59045 1.70467 1.96843 2.51137 2.64422 3.21371 3.29057 3.41276 3.45966 3.80710 3.83289 3.95725 4.07107 4.14275 4.22258 4.25411 4.34711 4.37409 4.52758 4.55094 4.61589 4.70301 4.84320 4.90637 4.92008 4.93794 5.05422 5.17950 5.28525 5.40812 5.63998 5.74670 6.06268 6.25443 6.30197 6.48275 6.82140 7.13733 7.83569 8.25976 9.19736 Molecular weight = 325.12amu Principal moments of inertia in cm(-1) A = 0.026438 B = 0.002574 C = 0.002439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.821927 B =10874.816857 C =11475.060752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.412 6.412 3 C 0.134 3.866 4 C 0.025 3.975 5 N -0.485 5.485 6 C 0.115 3.885 7 C -0.310 4.310 8 C 0.604 3.396 9 O -0.571 6.571 10 N -0.606 5.606 11 C 0.093 3.907 12 C -0.134 4.134 13 C 0.168 3.832 14 H 0.080 0.920 15 N -0.601 5.601 16 C 0.178 3.822 17 C -0.263 4.263 18 H 0.074 0.926 19 C -0.050 4.050 20 N -0.935 5.935 21 Si 0.967 3.033 22 H -0.268 1.268 23 H -0.291 1.291 24 H -0.294 1.294 25 C 0.097 3.903 26 S 0.276 5.724 27 H 0.063 0.937 28 H 0.056 0.944 29 H 0.096 0.904 30 H 0.107 0.893 31 H 0.093 0.907 32 H 0.189 0.811 33 H 0.095 0.905 34 H 0.090 0.910 35 H 0.072 0.928 36 H 0.095 0.905 37 H 0.013 0.987 38 H 0.027 0.973 39 H 0.017 0.983 40 H 0.248 0.752 41 H 0.062 0.938 42 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.096 2.506 -11.877 26.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.331 6.331 3 C 0.055 3.945 4 C -0.248 4.248 5 N -0.201 5.201 6 C -0.044 4.044 7 C -0.434 4.434 8 C 0.393 3.607 9 O -0.452 6.452 10 N -0.338 5.338 11 C -0.031 4.031 12 C -0.174 4.174 13 C 0.058 3.942 14 H 0.098 0.902 15 N -0.322 5.322 16 C 0.033 3.967 17 C -0.393 4.393 18 H 0.092 0.908 19 C -0.245 4.245 20 N -0.582 5.582 21 Si 0.796 3.204 22 H -0.193 1.193 23 H -0.218 1.218 24 H -0.221 1.221 25 C -0.027 4.027 26 S 0.535 5.465 27 H 0.082 0.918 28 H 0.074 0.926 29 H 0.114 0.886 30 H 0.125 0.875 31 H 0.111 0.889 32 H 0.206 0.794 33 H 0.113 0.887 34 H 0.107 0.893 35 H 0.090 0.910 36 H 0.113 0.887 37 H 0.031 0.969 38 H 0.045 0.955 39 H 0.035 0.965 40 H 0.058 0.942 41 H 0.080 0.920 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -23.005 2.265 -11.590 25.859 hybrid contribution 1.706 0.253 -0.320 1.754 sum -21.299 2.519 -11.910 24.532 Atomic orbital electron populations 1.23020 0.77962 1.04280 1.01755 1.87917 1.22520 1.26846 1.95831 1.21071 0.82505 0.86264 1.04709 1.27829 1.02345 1.01415 0.93237 1.66276 1.04633 1.16528 1.32682 1.22239 0.91081 0.95466 0.95629 1.25664 0.98086 1.20601 0.99048 1.16616 0.86705 0.76535 0.80861 1.90813 1.46030 1.53167 1.55236 1.48311 1.09971 1.71012 1.04538 1.22354 0.90830 1.03330 0.86543 1.23045 0.95985 1.03235 0.95120 1.21526 0.88571 0.97097 0.86968 0.90201 1.43991 1.36606 1.03217 1.48408 1.20540 0.98438 0.82474 0.95228 1.19585 1.17931 0.97990 1.03805 0.90833 1.25681 1.02730 0.99282 0.96813 1.70231 1.42364 1.26874 1.18702 0.85203 0.79188 0.78223 0.77793 1.19265 1.21782 1.22146 1.22768 0.83454 1.01208 0.95305 1.83892 0.93038 1.62021 1.07581 0.91808 0.92578 0.88560 0.87501 0.88939 0.79417 0.88697 0.89254 0.90951 0.88669 0.96881 0.95499 0.96458 0.94225 0.91992 0.91941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 113.37 1.25 1.45 16 2 O -0.41 -6.53 10.69 -148.98 -1.59 -8.12 16 3 C 0.13 1.70 6.51 71.24 0.46 2.17 16 4 C 0.03 0.48 7.02 88.46 0.62 1.10 16 5 N -0.49 -11.64 10.51 -190.29 -2.00 -13.64 16 6 C 0.12 2.93 11.09 84.23 0.93 3.87 16 7 C -0.31 -8.02 6.40 23.88 0.15 -7.86 16 8 C 0.60 19.55 7.82 86.45 0.68 20.23 16 9 O -0.57 -22.61 17.12 -4.33 -0.07 -22.68 16 10 N -0.61 -18.54 3.33 -816.54 -2.72 -21.26 16 11 C 0.09 2.19 5.19 86.73 0.45 2.64 16 12 C -0.13 -3.92 6.51 31.79 0.21 -3.72 16 13 C 0.17 6.24 3.54 46.38 0.16 6.40 16 14 H 0.08 2.98 7.94 -2.38 -0.02 2.96 16 15 N -0.60 -28.39 2.96 -695.05 -2.06 -30.45 16 16 C 0.18 8.41 7.59 127.77 0.97 9.38 16 17 C -0.26 -13.84 9.65 84.03 0.81 -13.03 16 18 H 0.07 3.76 7.83 -2.91 -0.02 3.74 16 19 C -0.05 -2.70 5.12 84.86 0.43 -2.27 16 20 N -0.94 -53.33 10.51 21.65 0.23 -53.10 16 21 Si 0.97 44.08 29.57 68.60 2.03 46.11 16 22 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 23 H -0.29 -13.19 7.11 99.48 0.71 -12.49 16 24 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 25 C 0.10 3.48 6.46 86.85 0.56 4.05 16 26 S 0.28 4.94 18.64 -56.49 -1.05 3.88 16 27 H 0.06 0.27 8.14 -2.38 -0.02 0.25 16 28 H 0.06 0.32 8.14 -2.39 -0.02 0.30 16 29 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.19 4.57 8.06 -2.91 -0.02 4.54 16 33 H 0.10 1.80 6.88 -2.39 -0.02 1.79 16 34 H 0.09 1.79 7.00 -2.39 -0.02 1.78 16 35 H 0.07 2.28 7.08 -2.39 -0.02 2.27 16 36 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 37 H 0.01 0.66 7.42 -2.39 -0.02 0.64 16 38 H 0.03 1.10 6.34 -2.39 -0.02 1.08 16 39 H 0.02 0.89 7.12 -2.39 -0.02 0.87 16 40 H 0.25 13.81 8.31 -92.71 -0.77 13.04 16 41 H 0.06 2.39 8.04 -2.39 -0.02 2.37 16 42 H 0.06 2.36 6.33 -2.39 -0.02 2.35 16 Total: -1.00 -69.90 355.76 1.49 -68.41 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: 1.03 Total: 6.45 kcal Atomic # 6 Polarization: 16.72 SS G_CDS: 7.69 Total: 24.41 kcal Atomic # 7 Polarization: -111.90 SS G_CDS: -6.55 Total: -118.45 kcal Atomic # 8 Polarization: -29.14 SS G_CDS: -1.67 Total: -30.80 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Atomic # 16 Polarization: 4.94 SS G_CDS: -1.05 Total: 3.88 kcal Total: -69.90 1.49 -68.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980557374.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.288 kcal (2) G-P(sol) polarization free energy of solvation -69.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.51 seconds