Wall clock time and date at job start Fri Apr 10 2020 14:48:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42896 * 114.00241 * 2 1 4 4 C 1.50696 * 109.47573 * 179.97438 * 3 2 1 5 5 N 1.30938 * 122.90836 * 270.19616 * 4 3 2 6 6 C 1.29433 * 117.36565 * 180.30377 * 5 4 3 7 7 S 1.70949 * 110.38955 * 359.72925 * 6 5 4 8 8 C 1.35668 * 122.89923 * 89.99485 * 4 3 2 9 9 C 1.46674 * 126.13270 * 0.02562 * 8 4 3 10 10 O 1.21689 * 120.00250 * 4.54038 * 9 8 4 11 11 N 1.34780 * 120.00078 * 184.54651 * 9 8 4 12 12 C 1.46497 * 120.00025 * 5.67001 * 11 9 8 13 13 C 1.46500 * 120.00088 * 185.67727 * 11 9 8 14 14 C 1.52999 * 109.47619 * 83.08961 * 13 11 9 15 15 H 1.09006 * 113.03553 * 309.23492 * 14 13 11 16 16 C 1.53938 * 113.77233 * 177.48429 * 14 13 11 17 17 C 1.53949 * 86.29093 * 222.09083 * 16 14 13 18 18 N 1.47583 * 86.23829 * 23.55114 * 17 16 14 19 19 C 1.36931 * 134.49140 * 155.42966 * 18 17 16 20 20 H 1.08002 * 120.00151 * 148.36560 * 19 18 17 21 21 C 1.38819 * 120.00287 * 328.36256 * 19 18 17 22 22 N 1.31614 * 119.99974 * 174.87577 * 21 19 18 23 23 Si 1.86804 * 119.99384 * 354.87961 * 21 19 18 24 24 H 1.48496 * 109.47053 * 84.49517 * 23 21 19 25 25 H 1.48502 * 109.46858 * 204.49084 * 23 21 19 26 26 H 1.48499 * 109.47287 * 324.48945 * 23 21 19 27 27 H 1.08998 * 109.47224 * 60.00370 * 1 2 3 28 28 H 1.08997 * 109.46824 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47213 * 300.00259 * 1 2 3 30 30 H 1.09000 * 109.47252 * 59.99446 * 3 2 1 31 31 H 1.09002 * 109.46729 * 300.00174 * 3 2 1 32 32 H 1.07995 * 124.80262 * 179.76127 * 6 5 4 33 33 H 1.09006 * 109.47372 * 275.08296 * 12 11 9 34 34 H 1.09003 * 109.46919 * 35.07898 * 12 11 9 35 35 H 1.08999 * 109.47610 * 155.07885 * 12 11 9 36 36 H 1.09000 * 109.46866 * 323.08424 * 13 11 9 37 37 H 1.09003 * 109.47281 * 203.08814 * 13 11 9 38 38 H 1.09000 * 113.74416 * 107.74705 * 16 14 13 39 39 H 1.08998 * 113.74371 * 336.43877 * 16 14 13 40 40 H 1.09000 * 113.77094 * 137.90765 * 17 16 14 41 41 H 1.09001 * 113.76547 * 269.19289 * 17 16 14 42 42 H 0.97003 * 119.99472 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1865 0.0006 5 7 4.2210 1.1268 1.1002 6 6 5.5058 1.0316 0.9758 7 16 5.9435 1.0015 -0.6765 8 6 4.2476 1.1280 -1.1382 9 6 3.7250 1.1696 -2.5080 10 8 2.5368 1.3478 -2.7008 11 7 4.5608 1.0103 -3.5533 12 6 5.9673 0.6724 -3.3217 13 6 4.0627 1.1752 -4.9211 14 6 4.0578 2.6609 -5.2866 15 1 3.5594 3.2816 -4.5419 16 6 3.6076 2.9430 -6.7314 17 6 4.7558 3.9672 -6.7831 18 7 5.3785 3.1780 -5.7025 19 6 6.6630 2.9980 -5.2636 20 1 6.8551 2.8122 -4.2172 21 6 7.7184 3.0540 -6.1637 22 7 8.9585 2.9818 -5.7290 23 14 7.3781 3.2320 -7.9918 24 1 7.1918 4.6674 -8.3232 25 1 8.5255 2.6907 -8.7638 26 1 6.1469 2.4792 -8.3418 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.6886 1.8464 0.8899 31 1 1.6886 1.8463 -0.8900 32 1 6.2025 0.9782 1.7992 33 1 6.5350 1.5850 -3.1394 34 1 6.0454 0.0167 -2.4544 35 1 6.3681 0.1642 -4.1986 36 1 3.0487 0.7810 -4.9885 37 1 4.7097 0.6335 -5.6112 38 1 2.6164 3.3909 -6.8027 39 1 3.7427 2.0977 -7.4062 40 1 5.3166 3.9517 -7.7176 41 1 4.4620 4.9721 -6.4799 42 1 9.6960 3.0214 -6.3579 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085862584.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:48:00 Heat of formation + Delta-G solvation = 50.669398 kcal Electronic energy + Delta-G solvation = -26278.721306 eV Core-core repulsion = 22582.299200 eV Total energy + Delta-G solvation = -3696.422106 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.125 amu Computer time = 5.04 seconds Orbital eigenvalues (eV) -40.35961 -39.27116 -37.99757 -37.44717 -35.13731 -32.41836 -31.45247 -29.41426 -28.44728 -27.63407 -26.50555 -25.77142 -24.46526 -23.44807 -23.04063 -20.83246 -19.16740 -18.78189 -18.24167 -17.24326 -16.60915 -16.29007 -16.22495 -15.63297 -15.45130 -15.17603 -15.04284 -14.69743 -14.40255 -13.81554 -13.51159 -13.25981 -13.06553 -13.04552 -12.70714 -12.48012 -12.40262 -12.09190 -11.55343 -11.51115 -11.35353 -11.17874 -11.14826 -10.89097 -10.49551 -10.37993 -9.93946 -9.76142 -9.58606 -9.45765 -9.36591 -9.33044 -8.98096 -8.69654 -8.25074 -6.97441 -6.02625 -3.46050 0.28216 1.25814 1.67358 2.42726 3.20241 3.26716 3.29406 3.38916 3.42335 3.90564 4.35122 4.46144 4.64523 4.70971 4.98782 5.06835 5.20701 5.27865 5.29872 5.35149 5.39947 5.52783 5.64312 5.64796 5.69704 5.74591 5.90110 5.91022 6.04775 6.08094 6.15330 6.24632 6.33805 6.39365 6.41157 6.75922 7.03986 7.14317 7.39269 7.56515 7.68186 8.26452 8.30771 8.61689 9.56502 10.33391 11.12918 Molecular weight = 325.12amu Principal moments of inertia in cm(-1) A = 0.017150 B = 0.004239 C = 0.003561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1632.222432 B = 6604.424309 C = 7860.443104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.381 6.381 3 C 0.130 3.870 4 C 0.130 3.870 5 N -0.470 5.470 6 C -0.014 4.014 7 S 0.229 5.771 8 C -0.270 4.270 9 C 0.591 3.409 10 O -0.531 6.531 11 N -0.589 5.589 12 C 0.068 3.932 13 C 0.124 3.876 14 C 0.132 3.868 15 H 0.056 0.944 16 C -0.146 4.146 17 C 0.094 3.906 18 N -0.618 5.618 19 C -0.234 4.234 20 H 0.090 0.910 21 C 0.029 3.971 22 N -0.915 5.915 23 Si 0.898 3.102 24 H -0.288 1.288 25 H -0.304 1.304 26 H -0.268 1.268 27 H 0.045 0.955 28 H 0.083 0.917 29 H 0.038 0.962 30 H 0.060 0.940 31 H 0.095 0.905 32 H 0.200 0.800 33 H 0.089 0.911 34 H 0.057 0.943 35 H 0.097 0.903 36 H 0.079 0.921 37 H 0.088 0.912 38 H 0.060 0.940 39 H 0.079 0.921 40 H 0.046 0.954 41 H 0.040 0.960 42 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.764 -5.622 8.781 14.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.300 6.300 3 C 0.051 3.949 4 C -0.010 4.010 5 N -0.184 5.184 6 C -0.308 4.308 7 S 0.487 5.513 8 C -0.395 4.395 9 C 0.378 3.622 10 O -0.410 6.410 11 N -0.319 5.319 12 C -0.076 4.076 13 C 0.001 3.999 14 C 0.025 3.975 15 H 0.074 0.926 16 C -0.184 4.184 17 C -0.030 4.030 18 N -0.347 5.347 19 C -0.361 4.361 20 H 0.107 0.893 21 C -0.170 4.170 22 N -0.558 5.558 23 Si 0.730 3.270 24 H -0.215 1.215 25 H -0.232 1.232 26 H -0.194 1.194 27 H 0.064 0.936 28 H 0.102 0.898 29 H 0.057 0.943 30 H 0.078 0.922 31 H 0.113 0.887 32 H 0.216 0.784 33 H 0.107 0.893 34 H 0.075 0.925 35 H 0.116 0.884 36 H 0.097 0.903 37 H 0.106 0.894 38 H 0.079 0.921 39 H 0.098 0.902 40 H 0.063 0.937 41 H 0.058 0.942 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -9.023 -5.802 8.760 13.850 hybrid contribution -0.720 0.649 -0.769 1.237 sum -9.743 -5.153 7.990 13.614 Atomic orbital electron populations 1.22697 0.80775 1.02533 1.00057 1.87879 1.19729 1.26879 1.95507 1.21034 0.85466 0.85865 1.02502 1.20116 0.96900 0.98358 0.85590 1.66101 1.05383 1.15521 1.31406 1.29071 0.95497 1.02178 1.04031 1.84867 1.04633 1.62786 0.99019 1.25713 0.96951 1.17494 0.99380 1.16674 0.85763 0.77416 0.82356 1.90725 1.14765 1.50864 1.84690 1.47549 1.10138 1.67838 1.06392 1.22254 0.81510 1.02246 1.01594 1.21887 0.99760 0.97808 0.80439 1.22753 0.87367 0.92877 0.94520 0.92600 1.23559 0.97592 0.99915 0.97370 1.22902 0.92221 0.94425 0.93481 1.46293 1.01205 1.49120 1.38070 1.18657 0.79099 1.44693 0.93651 0.89281 1.25158 0.94992 0.98931 0.97925 1.69713 0.97804 1.53797 1.34518 0.86670 0.76232 0.77801 0.86321 1.21548 1.23217 1.19410 0.93591 0.89804 0.94299 0.92169 0.88718 0.78375 0.89340 0.92527 0.88445 0.90317 0.89359 0.92116 0.90208 0.93668 0.94179 0.92612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.40 11.01 101.05 1.11 1.51 16 2 O -0.38 -5.86 10.69 -35.23 -0.38 -6.24 16 3 C 0.13 1.96 5.80 36.00 0.21 2.17 16 4 C 0.13 2.08 6.42 -83.89 -0.54 1.54 16 5 N -0.47 -7.05 10.50 -11.53 -0.12 -7.17 16 6 C -0.01 -0.17 12.22 51.75 0.63 0.47 16 7 S 0.23 2.96 18.13 -107.50 -1.95 1.01 16 8 C -0.27 -4.38 6.23 -37.10 -0.23 -4.61 16 9 C 0.59 10.53 7.57 -12.85 -0.10 10.43 16 10 O -0.53 -10.20 13.91 5.20 0.07 -10.12 16 11 N -0.59 -10.18 2.89 -183.13 -0.53 -10.71 16 12 C 0.07 1.10 7.84 59.85 0.47 1.57 16 13 C 0.12 2.14 5.31 -4.04 -0.02 2.12 16 14 C 0.13 2.51 4.49 -66.74 -0.30 2.21 16 15 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 16 C -0.15 -2.50 7.86 -25.80 -0.20 -2.70 16 17 C 0.09 1.93 7.44 -2.97 -0.02 1.91 16 18 N -0.62 -13.99 3.18 -169.74 -0.54 -14.53 16 19 C -0.23 -6.00 10.07 -15.06 -0.15 -6.16 16 20 H 0.09 2.38 5.37 -52.49 -0.28 2.09 16 21 C 0.03 0.79 5.50 -17.43 -0.10 0.70 16 22 N -0.91 -26.19 13.97 55.49 0.78 -25.41 16 23 Si 0.90 21.71 24.85 -169.99 -4.22 17.49 16 24 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 25 H -0.30 -7.50 7.11 56.52 0.40 -7.10 16 26 H -0.27 -6.19 6.48 56.52 0.37 -5.83 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.10 1.50 5.91 -51.93 -0.31 1.19 16 32 H 0.20 1.59 8.06 -52.49 -0.42 1.17 16 33 H 0.09 1.62 5.19 -51.93 -0.27 1.35 16 34 H 0.06 0.79 4.93 -26.17 -0.13 0.66 16 35 H 0.10 1.59 7.78 -51.93 -0.40 1.18 16 36 H 0.08 1.27 7.56 -51.93 -0.39 0.88 16 37 H 0.09 1.53 7.77 -51.93 -0.40 1.13 16 38 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.08 1.32 8.10 -51.93 -0.42 0.90 16 40 H 0.05 0.98 3.62 -51.93 -0.19 0.79 16 41 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 42 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 346.16 15.07 5.22 5.22 Total: -1.00 -32.00 346.16 -6.26 -38.26 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: -5.35 Total: 1.06 kcal Atomic # 6 Polarization: 10.39 SS G_CDS: 0.76 Total: 11.16 kcal Atomic # 7 Polarization: -57.41 SS G_CDS: -0.42 Total: -57.82 kcal Atomic # 8 Polarization: -16.06 SS G_CDS: -0.30 Total: -16.36 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.22 Total: 17.49 kcal Atomic # 16 Polarization: 2.96 SS G_CDS: -1.95 Total: 1.01 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.00 -6.26 -38.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085862584.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.926 kcal (2) G-P(sol) polarization free energy of solvation -31.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.257 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.04 seconds