Wall clock time and date at job start Fri Apr 10 2020 14:48:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42896 * 114.00241 * 2 1 4 4 C 1.50696 * 109.47573 * 179.97438 * 3 2 1 5 5 N 1.30938 * 122.90836 * 270.19616 * 4 3 2 6 6 C 1.29433 * 117.36565 * 180.30377 * 5 4 3 7 7 S 1.70949 * 110.38955 * 359.72925 * 6 5 4 8 8 C 1.35668 * 122.89923 * 89.99485 * 4 3 2 9 9 C 1.46674 * 126.13270 * 0.02562 * 8 4 3 10 10 O 1.21689 * 120.00250 * 4.54038 * 9 8 4 11 11 N 1.34780 * 120.00078 * 184.54651 * 9 8 4 12 12 C 1.46497 * 120.00025 * 5.67001 * 11 9 8 13 13 C 1.46500 * 120.00088 * 185.67727 * 11 9 8 14 14 C 1.52999 * 109.47619 * 83.08961 * 13 11 9 15 15 H 1.09006 * 113.03553 * 309.23492 * 14 13 11 16 16 C 1.53938 * 113.77233 * 177.48429 * 14 13 11 17 17 C 1.53949 * 86.29093 * 222.09083 * 16 14 13 18 18 N 1.47583 * 86.23829 * 23.55114 * 17 16 14 19 19 C 1.36931 * 134.49140 * 155.42966 * 18 17 16 20 20 H 1.08002 * 120.00151 * 148.36560 * 19 18 17 21 21 C 1.38819 * 120.00287 * 328.36256 * 19 18 17 22 22 N 1.31614 * 119.99974 * 174.87577 * 21 19 18 23 23 Si 1.86804 * 119.99384 * 354.87961 * 21 19 18 24 24 H 1.48496 * 109.47053 * 84.49517 * 23 21 19 25 25 H 1.48502 * 109.46858 * 204.49084 * 23 21 19 26 26 H 1.48499 * 109.47287 * 324.48945 * 23 21 19 27 27 H 1.08998 * 109.47224 * 60.00370 * 1 2 3 28 28 H 1.08997 * 109.46824 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47213 * 300.00259 * 1 2 3 30 30 H 1.09000 * 109.47252 * 59.99446 * 3 2 1 31 31 H 1.09002 * 109.46729 * 300.00174 * 3 2 1 32 32 H 1.07995 * 124.80262 * 179.76127 * 6 5 4 33 33 H 1.09006 * 109.47372 * 275.08296 * 12 11 9 34 34 H 1.09003 * 109.46919 * 35.07898 * 12 11 9 35 35 H 1.08999 * 109.47610 * 155.07885 * 12 11 9 36 36 H 1.09000 * 109.46866 * 323.08424 * 13 11 9 37 37 H 1.09003 * 109.47281 * 203.08814 * 13 11 9 38 38 H 1.09000 * 113.74416 * 107.74705 * 16 14 13 39 39 H 1.08998 * 113.74371 * 336.43877 * 16 14 13 40 40 H 1.09000 * 113.77094 * 137.90765 * 17 16 14 41 41 H 1.09001 * 113.76547 * 269.19289 * 17 16 14 42 42 H 0.97003 * 119.99472 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1865 0.0006 5 7 4.2210 1.1268 1.1002 6 6 5.5058 1.0316 0.9758 7 16 5.9435 1.0015 -0.6765 8 6 4.2476 1.1280 -1.1382 9 6 3.7250 1.1696 -2.5080 10 8 2.5368 1.3478 -2.7008 11 7 4.5608 1.0103 -3.5533 12 6 5.9673 0.6724 -3.3217 13 6 4.0627 1.1752 -4.9211 14 6 4.0578 2.6609 -5.2866 15 1 3.5594 3.2816 -4.5419 16 6 3.6076 2.9430 -6.7314 17 6 4.7558 3.9672 -6.7831 18 7 5.3785 3.1780 -5.7025 19 6 6.6630 2.9980 -5.2636 20 1 6.8551 2.8122 -4.2172 21 6 7.7184 3.0540 -6.1637 22 7 8.9585 2.9818 -5.7290 23 14 7.3781 3.2320 -7.9918 24 1 7.1918 4.6674 -8.3232 25 1 8.5255 2.6907 -8.7638 26 1 6.1469 2.4792 -8.3418 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.6886 1.8464 0.8899 31 1 1.6886 1.8463 -0.8900 32 1 6.2025 0.9782 1.7992 33 1 6.5350 1.5850 -3.1394 34 1 6.0454 0.0167 -2.4544 35 1 6.3681 0.1642 -4.1986 36 1 3.0487 0.7810 -4.9885 37 1 4.7097 0.6335 -5.6112 38 1 2.6164 3.3909 -6.8027 39 1 3.7427 2.0977 -7.4062 40 1 5.3166 3.9517 -7.7176 41 1 4.4620 4.9721 -6.4799 42 1 9.6960 3.0214 -6.3579 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085862584.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:48:00 Heat of formation + Delta-G solvation = 27.573062 kcal Electronic energy + Delta-G solvation = -26279.722838 eV Core-core repulsion = 22582.299200 eV Total energy + Delta-G solvation = -3697.423638 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.125 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.58945 -40.59591 -39.51508 -38.51847 -36.52442 -34.39516 -32.62813 -30.88728 -30.05210 -28.91040 -27.69398 -26.92768 -25.52504 -25.14387 -24.59077 -22.13330 -20.78371 -19.91602 -19.53307 -19.02411 -17.78868 -17.59139 -17.46658 -17.21309 -16.66498 -16.53992 -16.28396 -15.90904 -15.64424 -15.29291 -15.02388 -14.78704 -14.58553 -14.31996 -14.11510 -14.05784 -13.58190 -13.22338 -13.11892 -12.92308 -12.78616 -12.61110 -12.48826 -12.29094 -12.08022 -12.02168 -11.51011 -11.26058 -11.18661 -10.69717 -10.67018 -10.54075 -10.47342 -10.12420 -9.61088 -8.82813 -8.07530 -5.47480 -0.83884 0.15838 0.60568 1.29314 1.36226 1.42414 1.51853 1.89046 1.97638 2.48525 2.86724 2.99832 3.22518 3.29502 3.49976 3.80578 3.88784 4.03198 4.08495 4.19802 4.30402 4.38080 4.47048 4.49677 4.51640 4.55724 4.62565 4.64042 4.66116 4.78014 4.82691 4.89077 4.91507 4.95663 4.99832 5.36297 5.53572 5.66571 6.12948 6.21274 6.28743 6.54893 6.63364 6.95419 7.54521 8.42225 9.11037 Molecular weight = 325.12amu Principal moments of inertia in cm(-1) A = 0.017150 B = 0.004239 C = 0.003561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1632.222432 B = 6604.424309 C = 7860.443104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.405 6.405 3 C 0.131 3.869 4 C 0.126 3.874 5 N -0.493 5.493 6 C 0.009 3.991 7 S 0.249 5.751 8 C -0.307 4.307 9 C 0.588 3.412 10 O -0.551 6.551 11 N -0.594 5.594 12 C 0.076 3.924 13 C 0.127 3.873 14 C 0.132 3.868 15 H 0.045 0.955 16 C -0.123 4.123 17 C 0.082 3.918 18 N -0.640 5.640 19 C -0.212 4.212 20 H 0.072 0.928 21 C -0.025 4.025 22 N -0.957 5.957 23 Si 0.946 3.054 24 H -0.292 1.292 25 H -0.315 1.315 26 H -0.248 1.248 27 H 0.044 0.956 28 H 0.100 0.900 29 H 0.057 0.943 30 H 0.074 0.926 31 H 0.081 0.919 32 H 0.243 0.757 33 H 0.065 0.935 34 H 0.080 0.920 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.088 0.912 38 H 0.094 0.906 39 H 0.091 0.909 40 H 0.037 0.963 41 H 0.048 0.952 42 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.132 -6.186 9.190 15.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.325 6.325 3 C 0.053 3.947 4 C -0.014 4.014 5 N -0.207 5.207 6 C -0.284 4.284 7 S 0.508 5.492 8 C -0.432 4.432 9 C 0.376 3.624 10 O -0.432 6.432 11 N -0.324 5.324 12 C -0.068 4.068 13 C 0.004 3.996 14 C 0.026 3.974 15 H 0.062 0.938 16 C -0.161 4.161 17 C -0.042 4.042 18 N -0.369 5.369 19 C -0.340 4.340 20 H 0.089 0.911 21 C -0.220 4.220 22 N -0.604 5.604 23 Si 0.778 3.222 24 H -0.220 1.220 25 H -0.244 1.244 26 H -0.173 1.173 27 H 0.063 0.937 28 H 0.118 0.882 29 H 0.075 0.925 30 H 0.092 0.908 31 H 0.099 0.901 32 H 0.259 0.741 33 H 0.084 0.916 34 H 0.097 0.903 35 H 0.111 0.889 36 H 0.111 0.889 37 H 0.107 0.893 38 H 0.112 0.888 39 H 0.110 0.890 40 H 0.055 0.945 41 H 0.066 0.934 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -10.437 -6.371 9.159 15.277 hybrid contribution -0.354 0.860 -0.719 1.175 sum -10.790 -5.511 8.440 14.766 Atomic orbital electron populations 1.22917 0.78816 1.03950 1.00896 1.87835 1.21969 1.27023 1.95652 1.20990 0.85343 0.85953 1.02441 1.20371 0.97554 0.97595 0.85909 1.66174 1.06438 1.17176 1.30956 1.29792 0.95171 0.98788 1.04645 1.84730 1.02438 1.62414 0.99624 1.25644 0.98940 1.19917 0.98678 1.16907 0.85572 0.76833 0.83047 1.90697 1.15537 1.51774 1.85227 1.47619 1.10385 1.67912 1.06444 1.22151 0.80741 1.01442 1.02484 1.21832 1.00586 0.96591 0.80593 1.22800 0.85242 0.93603 0.95740 0.93778 1.23433 0.98015 0.99110 0.95552 1.23095 0.93279 0.95600 0.92184 1.46572 1.01263 1.50496 1.38572 1.18668 0.80574 1.41825 0.92949 0.91060 1.25680 0.94900 1.00244 1.01147 1.69829 0.98542 1.56767 1.35277 0.85888 0.76308 0.77523 0.82527 1.21973 1.24380 1.17289 0.93715 0.88151 0.92458 0.90787 0.90087 0.74117 0.91642 0.90276 0.88880 0.88922 0.89327 0.88752 0.89036 0.94482 0.93414 0.93156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.63 11.01 113.37 1.25 1.88 16 2 O -0.41 -12.19 10.69 -148.98 -1.59 -13.78 16 3 C 0.13 3.90 5.80 71.23 0.41 4.32 16 4 C 0.13 3.95 6.42 42.10 0.27 4.22 16 5 N -0.49 -13.94 10.50 -190.41 -2.00 -15.94 16 6 C 0.01 0.20 12.22 130.60 1.60 1.80 16 7 S 0.25 6.13 18.13 -56.49 -1.02 5.11 16 8 C -0.31 -9.80 6.23 23.88 0.15 -9.66 16 9 C 0.59 20.87 7.57 86.45 0.65 21.52 16 10 O -0.55 -21.14 13.91 -4.31 -0.06 -21.20 16 11 N -0.59 -20.32 2.89 -851.51 -2.46 -22.78 16 12 C 0.08 2.45 7.84 127.77 1.00 3.45 16 13 C 0.13 4.23 5.31 86.38 0.46 4.69 16 14 C 0.13 4.84 4.49 45.05 0.20 5.04 16 15 H 0.04 1.75 8.14 -2.38 -0.02 1.73 16 16 C -0.12 -3.82 7.86 31.25 0.25 -3.57 16 17 C 0.08 3.20 7.44 86.48 0.64 3.85 16 18 N -0.64 -28.34 3.18 -690.92 -2.20 -30.54 16 19 C -0.21 -10.94 10.07 84.04 0.85 -10.09 16 20 H 0.07 3.90 5.37 -2.91 -0.02 3.88 16 21 C -0.02 -1.35 5.50 84.86 0.47 -0.89 16 22 N -0.96 -56.10 13.97 21.65 0.30 -55.80 16 23 Si 0.95 44.65 24.85 68.60 1.70 46.36 16 24 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 25 H -0.31 -15.26 7.11 99.48 0.71 -14.56 16 26 H -0.25 -10.74 6.48 99.48 0.64 -10.10 16 27 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 29 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.08 2.59 5.91 -2.39 -0.01 2.58 16 32 H 0.24 2.87 8.06 -2.91 -0.02 2.85 16 33 H 0.07 2.44 5.19 -2.38 -0.01 2.43 16 34 H 0.08 2.16 4.93 -18.77 -0.09 2.06 16 35 H 0.09 3.05 7.78 -2.39 -0.02 3.03 16 36 H 0.09 2.84 7.56 -2.39 -0.02 2.82 16 37 H 0.09 2.95 7.77 -2.39 -0.02 2.93 16 38 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 39 H 0.09 2.68 8.10 -2.39 -0.02 2.66 16 40 H 0.04 1.52 3.62 -2.39 -0.01 1.51 16 41 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 42 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16 Total: -1.00 -69.53 346.16 1.78 -67.76 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: 0.91 Total: 14.26 kcal Atomic # 6 Polarization: 18.37 SS G_CDS: 8.19 Total: 26.56 kcal Atomic # 7 Polarization: -118.70 SS G_CDS: -6.36 Total: -125.05 kcal Atomic # 8 Polarization: -33.33 SS G_CDS: -1.65 Total: -34.98 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 1.70 Total: 46.36 kcal Atomic # 16 Polarization: 6.13 SS G_CDS: -1.02 Total: 5.11 kcal Total: -69.53 1.78 -67.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085862584.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.328 kcal (2) G-P(sol) polarization free energy of solvation -69.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.755 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds