Wall clock time and date at job start Fri Apr 10 2020 14:48:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42902 * 113.99748 * 2 1 4 4 C 1.50698 * 109.47035 * 179.97438 * 3 2 1 5 5 N 1.29433 * 124.80163 * 89.69284 * 4 3 2 6 6 C 1.30944 * 117.36451 * 180.26825 * 5 4 3 7 7 C 1.35665 * 114.18643 * 0.02562 * 6 5 4 8 8 C 1.46684 * 126.12826 * 179.97438 * 7 6 5 9 9 O 1.21687 * 120.00141 * 351.69281 * 8 7 6 10 10 N 1.34773 * 120.00236 * 171.68671 * 8 7 6 11 11 C 1.46507 * 120.00023 * 0.32665 * 10 8 7 12 12 C 1.46504 * 120.00104 * 180.32881 * 10 8 7 13 13 C 1.52997 * 109.47274 * 84.72664 * 12 10 8 14 14 H 1.09007 * 112.96432 * 294.26131 * 13 12 10 15 15 C 1.53950 * 113.77079 * 65.93799 * 13 12 10 16 16 C 1.53949 * 86.28738 * 137.90843 * 15 13 12 17 17 N 1.47578 * 113.77218 * 162.58283 * 13 12 10 18 18 C 1.36938 * 134.49260 * 41.06598 * 17 13 12 19 19 H 1.08007 * 119.99927 * 4.91109 * 18 17 13 20 20 C 1.38809 * 120.00351 * 184.91786 * 18 17 13 21 21 N 1.31620 * 119.99668 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 120.00229 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47246 * 0.02562 * 22 20 18 24 24 H 1.48499 * 109.47029 * 119.99560 * 22 20 18 25 25 H 1.48498 * 109.47061 * 239.99467 * 22 20 18 26 26 S 1.70950 * 124.80629 * 270.00156 * 4 3 2 27 27 H 1.09008 * 109.47078 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47361 * 299.99520 * 1 2 3 29 29 H 1.09002 * 109.47106 * 60.00119 * 1 2 3 30 30 H 1.08998 * 109.46708 * 59.99930 * 3 2 1 31 31 H 1.09004 * 109.47131 * 300.00077 * 3 2 1 32 32 H 1.07990 * 122.90794 * 180.02562 * 6 5 4 33 33 H 1.08995 * 109.46835 * 83.65295 * 11 10 8 34 34 H 1.09000 * 109.47263 * 203.65530 * 11 10 8 35 35 H 1.09003 * 109.46890 * 323.65499 * 11 10 8 36 36 H 1.09002 * 109.46813 * 204.72592 * 12 10 8 37 37 H 1.08991 * 109.46937 * 324.72510 * 12 10 8 38 38 H 1.08999 * 113.74330 * 252.25412 * 15 13 12 39 39 H 1.08993 * 113.74186 * 23.45573 * 15 13 12 40 40 H 1.09000 * 113.76696 * 90.69689 * 16 15 13 41 41 H 1.09000 * 113.76523 * 221.97621 * 16 15 13 42 42 H 0.97001 * 119.99824 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1866 0.0006 5 7 4.2489 1.1224 -1.0619 6 6 5.5428 1.0154 -0.8918 7 6 5.9321 0.9862 0.4075 8 6 7.3110 0.8724 0.8948 9 8 8.2153 0.6422 0.1138 10 7 7.5764 1.0229 2.2075 11 6 6.4867 1.2931 3.1489 12 6 8.9544 0.9164 2.6932 13 6 9.6549 2.2680 2.5406 14 1 9.7821 2.5660 1.4998 15 6 9.0691 3.3751 3.4357 16 6 10.5272 3.7860 3.7102 17 7 10.8819 2.3970 3.3504 18 6 11.9271 1.5639 3.6484 19 1 11.9915 0.5910 3.1839 20 6 12.9037 1.9698 4.5474 21 7 12.8254 3.1557 5.1131 22 14 14.3291 0.8331 4.9543 23 1 14.1865 -0.4325 4.1907 24 1 15.6081 1.4916 4.5857 25 1 14.3261 0.5370 6.4095 26 16 4.4847 1.1098 1.4047 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.6885 1.8463 0.8900 31 1 1.6885 1.8464 -0.8900 32 1 6.2397 0.9556 -1.7145 33 1 6.0147 0.3540 3.4375 34 1 6.8861 1.7865 4.0350 35 1 5.7488 1.9400 2.6744 36 1 8.9479 0.6272 3.7441 37 1 9.4871 0.1635 2.1125 38 1 8.4974 4.1250 2.8890 39 1 8.5450 2.9980 4.3138 40 1 10.9124 4.5305 3.0135 41 1 10.7240 4.0370 4.7525 42 1 13.5081 3.4395 5.7411 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086002185.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:48:19 Heat of formation + Delta-G solvation = 40.951707 kcal Electronic energy + Delta-G solvation = -24935.023583 eV Core-core repulsion = 21238.180086 eV Total energy + Delta-G solvation = -3696.843496 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.125 amu Computer time = 1.86 seconds Orbital eigenvalues (eV) -40.34921 -39.50528 -38.18730 -37.71592 -35.35739 -32.22686 -31.83805 -29.47170 -28.27251 -27.84948 -26.84703 -26.19816 -24.25369 -23.37051 -22.86758 -21.02833 -19.19669 -19.12382 -18.45681 -17.06554 -16.95754 -16.64914 -16.43461 -15.89577 -15.77897 -15.39376 -14.91903 -14.68039 -14.38651 -14.02036 -13.65894 -13.52506 -13.19393 -13.07130 -13.01504 -12.67358 -12.42007 -12.19185 -11.93403 -11.67872 -11.46021 -11.08233 -10.90450 -10.71922 -10.45802 -10.32299 -10.05912 -9.83706 -9.79130 -9.72664 -9.65838 -9.54455 -9.20669 -8.77274 -8.45143 -6.86009 -5.74498 -3.08094 -0.01748 0.93254 1.36204 2.23152 2.92987 3.11511 3.33444 3.39893 3.46183 3.48186 3.95555 4.41725 4.46711 4.48887 4.80553 4.84637 4.86249 4.92084 4.96717 5.11518 5.12911 5.21402 5.21726 5.40499 5.50398 5.57215 5.77317 5.88269 5.91730 6.14619 6.22388 6.37033 6.51883 6.53219 6.68905 6.78207 7.24810 7.31627 7.42507 7.46678 7.60675 8.00651 8.11775 9.06449 9.72902 10.62003 11.41691 Molecular weight = 325.12amu Principal moments of inertia in cm(-1) A = 0.032201 B = 0.002480 C = 0.002441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.329709 B =11287.044170 C =11466.372045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.383 6.383 3 C 0.139 3.861 4 C 0.011 3.989 5 N -0.463 5.463 6 C 0.113 3.887 7 C -0.281 4.281 8 C 0.588 3.412 9 O -0.519 6.519 10 N -0.598 5.598 11 C 0.064 3.936 12 C 0.120 3.880 13 C 0.130 3.870 14 H 0.049 0.951 15 C -0.159 4.159 16 C 0.156 3.844 17 N -0.602 5.602 18 C -0.220 4.220 19 H 0.079 0.921 20 C -0.008 4.008 21 N -0.920 5.920 22 Si 0.910 3.090 23 H -0.279 1.279 24 H -0.291 1.291 25 H -0.290 1.290 26 S 0.222 5.778 27 H 0.091 0.909 28 H 0.045 0.955 29 H 0.046 0.954 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.189 0.811 33 H 0.066 0.934 34 H 0.099 0.901 35 H 0.069 0.931 36 H 0.089 0.911 37 H 0.079 0.921 38 H 0.047 0.953 39 H 0.072 0.928 40 H 0.023 0.977 41 H 0.078 0.922 42 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.425 -2.160 -5.327 27.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.301 6.301 3 C 0.059 3.941 4 C -0.263 4.263 5 N -0.178 5.178 6 C -0.044 4.044 7 C -0.405 4.405 8 C 0.374 3.626 9 O -0.396 6.396 10 N -0.331 5.331 11 C -0.081 4.081 12 C -0.002 4.002 13 C 0.022 3.978 14 H 0.067 0.933 15 C -0.197 4.197 16 C 0.031 3.969 17 N -0.328 5.328 18 C -0.348 4.348 19 H 0.097 0.903 20 C -0.204 4.204 21 N -0.568 5.568 22 Si 0.741 3.259 23 H -0.204 1.204 24 H -0.218 1.218 25 H -0.217 1.217 26 S 0.480 5.520 27 H 0.109 0.891 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.092 0.908 31 H 0.098 0.902 32 H 0.206 0.794 33 H 0.084 0.916 34 H 0.118 0.882 35 H 0.086 0.914 36 H 0.107 0.893 37 H 0.098 0.902 38 H 0.066 0.934 39 H 0.090 0.910 40 H 0.041 0.959 41 H 0.097 0.903 42 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -26.064 -2.510 -4.984 26.655 hybrid contribution 1.234 -0.289 -0.629 1.415 sum -24.830 -2.799 -5.614 25.610 Atomic orbital electron populations 1.22816 0.79939 1.03374 1.00371 1.87968 1.20343 1.26275 1.95525 1.20792 0.84759 0.86053 1.02479 1.27403 1.00902 1.03433 0.94543 1.66219 1.04810 1.14823 1.31970 1.22148 0.90719 0.95952 0.95604 1.25995 0.98278 1.18210 0.98027 1.16780 0.85644 0.77766 0.82460 1.90870 1.45305 1.48703 1.54745 1.47685 1.09192 1.70092 1.06116 1.22101 0.89718 1.01479 0.94826 1.21902 0.78454 0.99828 1.00048 1.22537 0.87565 0.92473 0.95253 0.93346 1.23767 0.98749 0.98158 0.99045 1.22302 0.87328 0.86796 1.00511 1.46070 1.21152 1.10700 1.54905 1.19071 0.99726 0.96468 1.19541 0.90315 1.24776 0.99140 0.97107 0.99425 1.69831 1.35526 1.18832 1.32583 0.86070 0.82279 0.79778 0.77806 1.20415 1.21802 1.21730 1.84334 0.95199 1.63820 1.08634 0.89089 0.93614 0.93579 0.90763 0.90150 0.79414 0.91578 0.88218 0.91375 0.89308 0.90229 0.93397 0.90953 0.95900 0.90345 0.93775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 101.05 1.11 1.27 16 2 O -0.38 -3.44 10.69 -35.23 -0.38 -3.81 16 3 C 0.14 1.07 6.51 36.00 0.23 1.30 16 4 C 0.01 0.11 7.01 -13.29 -0.09 0.02 16 5 N -0.46 -5.88 10.51 -11.50 -0.12 -6.00 16 6 C 0.11 1.48 11.10 -18.85 -0.21 1.27 16 7 C -0.28 -3.68 6.25 -37.09 -0.23 -3.91 16 8 C 0.59 9.38 7.61 -12.85 -0.10 9.28 16 9 O -0.52 -10.20 16.54 5.20 0.09 -10.12 16 10 N -0.60 -8.77 2.79 -183.12 -0.51 -9.28 16 11 C 0.06 0.66 8.67 59.85 0.52 1.18 16 12 C 0.12 2.15 5.23 -4.04 -0.02 2.13 16 13 C 0.13 2.69 4.53 -66.86 -0.30 2.38 16 14 H 0.05 1.09 8.14 -51.92 -0.42 0.67 16 15 C -0.16 -2.93 7.32 -25.79 -0.19 -3.12 16 16 C 0.16 3.67 7.65 -2.85 -0.02 3.65 16 17 N -0.60 -15.34 3.58 -169.72 -0.61 -15.95 16 18 C -0.22 -6.15 10.51 -15.06 -0.16 -6.31 16 19 H 0.08 2.15 7.83 -52.48 -0.41 1.74 16 20 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 21 N -0.92 -27.22 11.32 55.49 0.63 -26.59 16 22 Si 0.91 22.27 29.55 -169.99 -5.02 17.24 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 24 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 25 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 26 S 0.22 2.10 18.11 -107.50 -1.95 0.15 16 27 H 0.09 0.37 8.14 -51.92 -0.42 -0.05 16 28 H 0.05 0.16 8.14 -51.93 -0.42 -0.26 16 29 H 0.05 0.19 8.14 -51.93 -0.42 -0.24 16 30 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.19 2.31 8.06 -52.49 -0.42 1.89 16 33 H 0.07 0.57 7.82 -51.93 -0.41 0.16 16 34 H 0.10 0.97 6.67 -51.93 -0.35 0.63 16 35 H 0.07 0.62 4.59 -23.57 -0.11 0.51 16 36 H 0.09 1.55 8.03 -51.93 -0.42 1.13 16 37 H 0.08 1.57 7.58 -51.93 -0.39 1.18 16 38 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.07 1.22 6.96 -51.93 -0.36 0.86 16 40 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 41 H 0.08 2.01 6.97 -51.93 -0.36 1.65 16 42 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 361.26 15.07 5.44 5.44 Total: -1.00 -34.78 361.26 -7.73 -42.51 By element: Atomic # 1 Polarization: 3.33 SS G_CDS: -5.75 Total: -2.41 kcal Atomic # 6 Polarization: 8.37 SS G_CDS: 0.45 Total: 8.82 kcal Atomic # 7 Polarization: -57.22 SS G_CDS: -0.61 Total: -57.83 kcal Atomic # 8 Polarization: -13.64 SS G_CDS: -0.29 Total: -13.93 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.24 kcal Atomic # 16 Polarization: 2.10 SS G_CDS: -1.95 Total: 0.15 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -34.78 -7.73 -42.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086002185.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.462 kcal (2) G-P(sol) polarization free energy of solvation -34.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.510 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.86 seconds