Wall clock time and date at job start Fri Apr 10 2020 14:47:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46957 * 110.99669 * 2 1 4 4 C 1.53056 * 109.36272 * 176.81142 * 3 2 1 5 5 N 1.46963 * 109.36215 * 58.40123 * 4 3 2 6 6 C 1.39668 * 110.99804 * 176.80941 * 5 4 3 7 7 C 1.38993 * 120.03452 * 0.02562 * 6 5 4 8 8 C 1.38133 * 120.07043 * 179.97438 * 7 6 5 9 9 C 1.38185 * 120.14852 * 0.04285 * 8 7 6 10 10 C 1.38948 * 120.06974 * 0.02562 * 9 8 7 11 11 N 1.39676 * 120.03587 * 179.97438 * 10 9 8 12 12 S 1.65595 * 120.00049 * 44.99488 * 11 10 9 13 13 O 1.42097 * 106.40159 * 178.54252 * 12 11 10 14 14 O 1.42103 * 106.40476 * 311.46536 * 12 11 10 15 15 C 1.76205 * 107.21716 * 65.00404 * 12 11 10 16 16 H 1.08000 * 119.99689 * 359.97438 * 15 12 11 17 17 C 1.37873 * 119.99899 * 180.02562 * 15 12 11 18 18 N 1.31512 * 120.00242 * 359.97438 * 17 15 12 19 19 Si 1.86806 * 119.99619 * 180.02562 * 17 15 12 20 20 H 1.48498 * 109.47357 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47076 * 119.99777 * 19 17 15 22 22 H 1.48504 * 109.46914 * 239.99256 * 19 17 15 23 23 C 1.38748 * 120.03521 * 179.72688 * 6 5 4 24 24 C 1.46953 * 110.88176 * 300.68256 * 5 4 3 25 25 C 1.46954 * 111.00025 * 236.20522 * 2 1 3 26 26 H 1.09004 * 109.47198 * 59.99762 * 1 2 3 27 27 H 1.08994 * 109.47287 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47040 * 299.99810 * 1 2 3 29 29 H 1.09000 * 109.48960 * 56.85040 * 3 2 1 30 30 H 1.08993 * 109.51060 * 296.79238 * 3 2 1 31 31 H 1.08994 * 109.49121 * 178.37113 * 4 3 2 32 32 H 1.08998 * 109.48697 * 298.43883 * 4 3 2 33 33 H 1.07992 * 119.96836 * 0.02562 * 7 6 5 34 34 H 1.07999 * 119.92948 * 180.02562 * 8 7 6 35 35 H 1.07995 * 119.96370 * 179.97438 * 9 8 7 36 36 H 0.96994 * 119.99793 * 225.00192 * 11 10 9 37 37 H 0.96999 * 119.99898 * 180.02562 * 18 17 15 38 38 H 1.08000 * 120.07598 * 0.02562 * 23 6 5 39 39 H 1.09002 * 109.48895 * 299.35175 * 24 5 4 40 40 H 1.08999 * 109.50698 * 179.29562 * 24 5 4 41 41 H 1.09010 * 109.48735 * 303.15856 * 25 2 1 42 42 H 1.09006 * 109.49174 * 63.21596 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9956 1.3720 0.0000 4 6 3.5235 1.3292 0.0803 5 7 4.0501 0.5659 -1.0598 6 6 5.4468 0.5660 -1.0599 7 6 6.1425 1.2350 -0.0597 8 6 7.5238 1.2351 -0.0587 9 6 8.2186 0.5714 -1.0518 10 6 7.5292 -0.0981 -2.0554 11 7 8.2322 -0.7683 -3.0591 12 16 9.5250 -1.7259 -2.6666 13 8 9.9948 -2.2852 -3.8854 14 8 10.3448 -0.9567 -1.7974 15 6 8.9070 -3.0693 -1.7083 16 1 7.8516 -3.1354 -1.4888 17 6 9.7709 -4.0353 -1.2378 18 7 11.0561 -3.9544 -1.5047 19 14 9.1156 -5.4598 -0.2225 20 1 7.6455 -5.3206 -0.0652 21 1 9.4213 -6.7398 -0.9104 22 1 9.7593 -5.4511 1.1158 23 6 6.1413 -0.1069 -2.0548 24 6 3.5235 -0.8060 -1.0599 25 6 1.9957 -0.7631 -1.1401 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.6014 1.9128 0.8603 30 1 1.6937 1.8778 -0.9171 31 1 3.9178 2.3448 0.0513 32 1 3.8253 0.8479 1.0106 33 1 5.6026 1.7545 0.7180 34 1 8.0621 1.7553 0.7198 35 1 9.2985 0.5737 -1.0483 36 1 7.9633 -0.6728 -3.9861 37 1 11.6638 -4.6343 -1.1740 38 1 5.6031 -0.6312 -2.8307 39 1 3.8254 -1.3115 -0.1426 40 1 3.9177 -1.3472 -1.9200 41 1 1.6013 -1.7789 -1.1111 42 1 1.6938 -0.2819 -2.0705 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192972298.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:47:01 Heat of formation + Delta-G solvation = -40.047382 kcal Electronic energy + Delta-G solvation = -25835.530623 eV Core-core repulsion = 22135.174743 eV Total energy + Delta-G solvation = -3700.355880 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.125 amu Computer time = 4.19 seconds Orbital eigenvalues (eV) -40.32403 -38.43817 -35.97344 -35.26227 -34.09542 -33.75332 -33.09804 -31.42341 -30.25872 -28.61149 -27.21679 -26.17472 -24.21284 -24.08297 -21.62215 -21.47287 -19.92764 -19.06736 -17.91311 -17.31388 -16.44522 -15.98061 -15.66387 -15.47423 -15.22223 -15.06410 -14.90509 -14.73199 -14.31247 -14.06873 -13.65760 -13.53785 -13.34950 -12.75968 -12.64619 -12.24665 -12.07136 -11.98389 -11.69746 -11.44638 -11.39831 -11.28470 -11.25450 -11.11611 -10.97159 -10.60901 -10.55196 -10.42709 -10.16324 -9.78421 -9.44984 -9.29042 -8.88577 -8.64099 -7.99372 -7.52658 -6.74594 -5.36575 1.68149 1.76258 2.22328 3.04124 3.12432 3.20238 3.61693 3.69050 4.02820 4.17000 4.57785 4.61321 4.62648 4.74647 4.85757 5.05011 5.08725 5.21606 5.24737 5.26726 5.35868 5.37799 5.53575 5.55274 5.60476 5.67310 5.71525 5.76114 5.85467 5.86812 5.95489 6.10246 6.36596 6.46807 6.50464 6.70684 6.72525 6.89598 7.01302 7.09180 7.15515 7.29573 7.49864 7.84594 7.93977 8.85042 10.19626 Molecular weight = 325.12amu Principal moments of inertia in cm(-1) A = 0.015478 B = 0.003733 C = 0.003330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1808.606632 B = 7499.611020 C = 8406.711634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.547 5.547 3 C 0.056 3.944 4 C 0.053 3.947 5 N -0.490 5.490 6 C 0.118 3.882 7 C -0.192 4.192 8 C -0.074 4.074 9 C -0.169 4.169 10 C 0.202 3.798 11 N -1.075 6.075 12 S 2.706 3.294 13 O -0.999 6.999 14 O -0.994 6.994 15 C -1.013 5.013 16 H 0.104 0.896 17 C 0.134 3.866 18 N -0.845 5.845 19 Si 0.921 3.079 20 H -0.262 1.262 21 H -0.270 1.270 22 H -0.270 1.270 23 C -0.163 4.163 24 C 0.057 3.943 25 C 0.056 3.944 26 H 0.025 0.975 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.081 0.919 30 H 0.043 0.957 31 H 0.087 0.913 32 H 0.055 0.945 33 H 0.122 0.878 34 H 0.124 0.876 35 H 0.160 0.840 36 H 0.412 0.588 37 H 0.291 0.709 38 H 0.125 0.875 39 H 0.054 0.946 40 H 0.089 0.911 41 H 0.083 0.917 42 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.174 8.859 3.560 20.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.272 5.272 3 C -0.072 4.072 4 C -0.074 4.074 5 N -0.206 5.206 6 C 0.020 3.980 7 C -0.214 4.214 8 C -0.094 4.094 9 C -0.191 4.191 10 C 0.104 3.896 11 N -0.819 5.819 12 S 2.808 3.192 13 O -0.989 6.989 14 O -0.984 6.984 15 C -1.147 5.147 16 H 0.122 0.878 17 C -0.084 4.084 18 N -0.474 5.474 19 Si 0.745 3.255 20 H -0.186 1.186 21 H -0.195 1.195 22 H -0.195 1.195 23 C -0.187 4.187 24 C -0.069 4.069 25 C -0.072 4.072 26 H 0.044 0.956 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.099 0.901 30 H 0.061 0.939 31 H 0.105 0.895 32 H 0.074 0.926 33 H 0.139 0.861 34 H 0.142 0.858 35 H 0.178 0.822 36 H 0.245 0.755 37 H 0.102 0.898 38 H 0.143 0.857 39 H 0.073 0.927 40 H 0.108 0.892 41 H 0.101 0.899 42 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -17.064 8.911 3.409 19.550 hybrid contribution -1.005 -1.032 0.243 1.460 sum -18.068 7.879 3.653 20.047 Atomic orbital electron populations 1.22341 0.87099 1.02159 1.00641 1.62166 1.07889 1.13995 1.43103 1.22208 0.94492 0.89355 1.01174 1.22325 0.93934 0.99021 0.92139 1.59303 1.05373 1.14233 1.41733 1.18549 0.87270 0.97705 0.94445 1.21149 0.94823 1.06347 0.99080 1.20836 0.93332 0.97719 0.97482 1.22011 1.03013 0.97981 0.96055 1.17216 0.90337 0.92301 0.89779 1.54032 1.51956 1.62383 1.13510 1.00846 0.70879 0.73575 0.73914 1.93392 1.78410 1.78552 1.48535 1.93305 1.65552 1.72193 1.67373 1.30445 1.04807 1.27763 1.51673 0.87802 1.24727 0.93581 0.97593 0.92477 1.69892 1.03027 1.34960 1.39567 0.86117 0.80114 0.79889 0.79404 1.18558 1.19547 1.19500 1.20658 0.92770 1.04783 1.00527 1.22332 0.93866 0.87996 1.02728 1.22221 0.94471 0.98689 0.91849 0.95603 0.91299 0.91335 0.90052 0.93903 0.89459 0.92647 0.86057 0.85821 0.82223 0.75496 0.89843 0.85746 0.92716 0.89234 0.89892 0.93821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.60 60.07 0.58 0.77 16 2 N -0.55 -5.33 4.97 -242.75 -1.21 -6.53 16 3 C 0.06 0.51 5.62 -3.76 -0.02 0.49 16 4 C 0.05 0.56 4.29 -3.76 -0.02 0.55 16 5 N -0.49 -6.26 4.75 -170.98 -0.81 -7.07 16 6 C 0.12 1.77 5.64 -83.82 -0.47 1.30 16 7 C -0.19 -2.78 8.81 -39.34 -0.35 -3.12 16 8 C -0.07 -1.18 10.03 -39.64 -0.40 -1.58 16 9 C -0.17 -3.26 9.18 -39.34 -0.36 -3.62 16 10 C 0.20 3.87 6.21 -83.81 -0.52 3.35 16 11 N -1.08 -21.75 5.77 32.40 0.19 -21.57 16 12 S 2.71 70.64 4.95 -107.50 -0.53 70.11 16 13 O -1.00 -28.74 18.02 -57.17 -1.03 -29.77 16 14 O -0.99 -27.76 14.94 -57.17 -0.85 -28.62 16 15 C -1.01 -27.74 9.68 30.60 0.30 -27.44 16 16 H 0.10 2.66 7.81 -52.49 -0.41 2.25 16 17 C 0.13 3.72 5.46 -17.82 -0.10 3.62 16 18 N -0.84 -24.51 13.19 55.43 0.73 -23.78 16 19 Si 0.92 20.57 29.54 -169.99 -5.02 15.55 16 20 H -0.26 -5.68 7.11 56.52 0.40 -5.27 16 21 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 22 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 23 C -0.16 -2.71 9.11 -39.19 -0.36 -3.07 16 24 C 0.06 0.68 5.37 -3.77 -0.02 0.66 16 25 C 0.06 0.56 5.62 -3.77 -0.02 0.54 16 26 H 0.03 0.18 8.14 -51.93 -0.42 -0.24 16 27 H 0.07 0.47 8.13 -51.93 -0.42 0.05 16 28 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.09 0.84 7.17 -51.93 -0.37 0.47 16 32 H 0.06 0.62 7.58 -51.93 -0.39 0.23 16 33 H 0.12 1.43 5.80 -52.49 -0.30 1.12 16 34 H 0.12 1.64 8.06 -52.49 -0.42 1.22 16 35 H 0.16 3.41 5.58 -52.49 -0.29 3.12 16 36 H 0.41 7.01 8.95 -34.47 -0.31 6.71 16 37 H 0.29 7.57 8.31 -40.82 -0.34 7.23 16 38 H 0.12 1.88 7.17 -52.49 -0.38 1.50 16 39 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 40 H 0.09 1.08 6.80 -51.93 -0.35 0.72 16 41 H 0.08 0.73 8.13 -51.92 -0.42 0.31 16 42 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 350.41 15.07 5.28 5.28 Total: -1.00 -34.09 350.41 -10.77 -44.85 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: -5.75 Total: 9.11 kcal Atomic # 6 Polarization: -25.81 SS G_CDS: -1.76 Total: -27.56 kcal Atomic # 7 Polarization: -57.85 SS G_CDS: -1.10 Total: -58.95 kcal Atomic # 8 Polarization: -56.51 SS G_CDS: -1.88 Total: -58.39 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Atomic # 16 Polarization: 70.64 SS G_CDS: -0.53 Total: 70.11 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -34.09 -10.77 -44.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192972298.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.806 kcal (2) G-P(sol) polarization free energy of solvation -34.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.19 seconds