Wall clock time and date at job start Fri Apr 10 2020 14:47:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46956 * 110.99927 * 2 1 4 4 C 1.53050 * 109.36442 * 183.19240 * 3 2 1 5 5 N 1.46956 * 109.36323 * 301.59921 * 4 3 2 6 6 C 1.40021 * 111.00169 * 183.19367 * 5 4 3 7 7 C 1.38666 * 120.09156 * 300.25095 * 6 5 4 8 8 C 1.38268 * 119.99606 * 180.25793 * 7 6 5 9 9 C 1.38258 * 120.19549 * 359.76168 * 8 7 6 10 10 C 1.38264 * 120.19010 * 359.97438 * 9 8 7 11 11 C 1.38664 * 120.00186 * 359.97438 * 10 9 8 12 12 N 1.40017 * 120.09816 * 180.02562 * 11 10 9 13 13 S 1.65603 * 120.00030 * 327.62566 * 12 11 10 14 14 O 1.42096 * 106.40388 * 314.07245 * 13 12 11 15 15 O 1.42098 * 106.40071 * 181.14880 * 13 12 11 16 16 C 1.76200 * 107.21451 * 67.60939 * 13 12 11 17 17 H 1.07998 * 120.00192 * 0.02562 * 16 13 12 18 18 C 1.37882 * 119.99825 * 179.72193 * 16 13 12 19 19 N 1.31514 * 120.00019 * 0.28142 * 18 16 13 20 20 Si 1.86801 * 119.99874 * 180.27593 * 18 16 13 21 21 H 1.48500 * 109.46924 * 90.00415 * 20 18 16 22 22 H 1.48505 * 109.47029 * 210.00002 * 20 18 16 23 23 H 1.48493 * 109.47142 * 330.00274 * 20 18 16 24 24 C 1.46953 * 110.88494 * 59.31965 * 5 4 3 25 25 C 1.46956 * 111.00223 * 123.80192 * 2 1 3 26 26 H 1.08999 * 109.47393 * 60.00284 * 1 2 3 27 27 H 1.09008 * 109.46682 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47151 * 299.99722 * 1 2 3 29 29 H 1.08998 * 109.49052 * 63.22470 * 3 2 1 30 30 H 1.09002 * 109.50337 * 303.16489 * 3 2 1 31 31 H 1.09002 * 109.48630 * 181.63243 * 4 3 2 32 32 H 1.09004 * 109.50916 * 61.57689 * 4 3 2 33 33 H 1.07999 * 120.00333 * 0.02562 * 7 6 5 34 34 H 1.08000 * 119.90090 * 179.74028 * 8 7 6 35 35 H 1.07995 * 119.90430 * 180.02562 * 9 8 7 36 36 H 1.08001 * 120.00180 * 180.02562 * 10 9 8 37 37 H 0.96997 * 119.99871 * 147.62858 * 12 11 10 38 38 H 0.97003 * 120.00059 * 180.02562 * 19 18 16 39 39 H 1.08996 * 109.48283 * 60.64421 * 24 5 4 40 40 H 1.08988 * 109.49216 * 180.71239 * 24 5 4 41 41 H 1.08996 * 109.48680 * 296.77682 * 25 2 1 42 42 H 1.08993 * 109.48867 * 56.84606 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3720 0.0000 4 6 3.5234 1.3291 -0.0804 5 7 4.0501 0.5659 1.0596 6 6 5.4503 0.5659 1.0597 7 6 6.1456 0.0410 -0.0192 8 6 7.5283 0.0373 -0.0147 9 6 8.2216 0.5603 1.0611 10 6 7.5363 1.0906 2.1385 11 6 6.1497 1.0994 2.1420 12 7 5.4537 1.6365 3.2318 13 16 6.0895 1.5247 4.7568 14 8 6.5392 0.1851 4.9069 15 8 5.1464 2.1304 5.6301 16 6 7.5290 2.5401 4.7974 17 1 7.8307 3.0847 3.9149 18 6 8.2666 2.6442 5.9576 19 7 7.8990 1.9814 7.0323 20 14 9.7883 3.7268 6.0029 21 1 9.4061 5.1008 6.4167 22 1 10.7630 3.1702 6.9752 23 1 10.4053 3.7700 4.6529 24 6 3.5235 -0.8061 1.0597 25 6 1.9957 -0.7632 1.1400 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0278 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.6938 1.8774 0.9173 30 1 1.6013 1.9131 -0.8601 31 1 3.9177 2.3449 -0.0513 32 1 3.8256 0.8482 -1.0108 33 1 5.6072 -0.3682 -0.8612 34 1 8.0683 -0.3757 -0.8539 35 1 9.3016 0.5553 1.0594 36 1 8.0810 1.4987 2.9771 37 1 4.5991 2.0739 3.0935 38 1 8.4177 2.0550 7.8487 39 1 3.8254 -1.3114 0.1423 40 1 3.9179 -1.3469 1.9198 41 1 1.6939 -0.2821 2.0703 42 1 1.6014 -1.7789 1.1109 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192972397.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:47:07 Heat of formation + Delta-G solvation = -41.779611 kcal Electronic energy + Delta-G solvation = -26436.723419 eV Core-core repulsion = 22736.292424 eV Total energy + Delta-G solvation = -3700.430996 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.125 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.16284 -38.32384 -35.42008 -35.13236 -34.27104 -34.05278 -33.17462 -31.00960 -30.15927 -28.72328 -26.99057 -26.30863 -23.95954 -23.63735 -22.33729 -21.29524 -19.71633 -18.87452 -17.82908 -17.26867 -16.58930 -16.23166 -15.30599 -15.28101 -15.09931 -14.97786 -14.82703 -14.56211 -14.13643 -14.04781 -13.77656 -13.38846 -13.08039 -12.62549 -12.61336 -12.27653 -12.10056 -11.88324 -11.73192 -11.52893 -11.34636 -11.25997 -11.02574 -10.98494 -10.76462 -10.63953 -10.62264 -10.38549 -10.27531 -10.05184 -9.30214 -8.87663 -8.58261 -8.43599 -8.32665 -7.58870 -6.77717 -5.41488 1.63939 1.80990 2.18747 3.03509 3.10775 3.16586 3.75875 3.87679 3.99733 4.11630 4.55698 4.61663 4.78772 4.89741 5.08307 5.20150 5.23081 5.28342 5.36325 5.41070 5.41660 5.45490 5.54952 5.65702 5.68822 5.70994 5.80349 5.85304 5.87258 5.95932 6.03418 6.24089 6.39983 6.57221 6.66914 6.80499 6.83431 6.91265 6.96066 7.04534 7.18168 7.24617 7.61102 7.86200 7.93719 8.79365 10.16161 Molecular weight = 325.12amu Principal moments of inertia in cm(-1) A = 0.018056 B = 0.004197 C = 0.003705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.363090 B = 6669.375416 C = 7555.076248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.546 5.546 3 C 0.055 3.945 4 C 0.061 3.939 5 N -0.497 5.497 6 C 0.038 3.962 7 C -0.124 4.124 8 C -0.150 4.150 9 C -0.086 4.086 10 C -0.168 4.168 11 C 0.224 3.776 12 N -1.059 6.059 13 S 2.704 3.296 14 O -0.992 6.992 15 O -0.999 6.999 16 C -1.024 5.024 17 H 0.110 0.890 18 C 0.134 3.866 19 N -0.841 5.841 20 Si 0.921 3.079 21 H -0.266 1.266 22 H -0.274 1.274 23 H -0.260 1.260 24 C 0.063 3.937 25 C 0.055 3.945 26 H 0.066 0.934 27 H 0.067 0.933 28 H 0.026 0.974 29 H 0.045 0.955 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.045 0.955 33 H 0.116 0.884 34 H 0.116 0.884 35 H 0.124 0.876 36 H 0.163 0.837 37 H 0.416 0.584 38 H 0.293 0.707 39 H 0.046 0.954 40 H 0.084 0.916 41 H 0.046 0.954 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.965 -2.214 -15.407 17.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.271 5.271 3 C -0.073 4.073 4 C -0.067 4.067 5 N -0.218 5.218 6 C -0.060 4.060 7 C -0.144 4.144 8 C -0.170 4.170 9 C -0.105 4.105 10 C -0.190 4.190 11 C 0.124 3.876 12 N -0.799 5.799 13 S 2.804 3.196 14 O -0.982 6.982 15 O -0.990 6.990 16 C -1.157 5.157 17 H 0.128 0.872 18 C -0.084 4.084 19 N -0.470 5.470 20 Si 0.745 3.255 21 H -0.191 1.191 22 H -0.199 1.199 23 H -0.184 1.184 24 C -0.064 4.064 25 C -0.073 4.073 26 H 0.085 0.915 27 H 0.086 0.914 28 H 0.045 0.955 29 H 0.063 0.937 30 H 0.097 0.903 31 H 0.099 0.901 32 H 0.064 0.936 33 H 0.134 0.866 34 H 0.134 0.866 35 H 0.142 0.858 36 H 0.180 0.820 37 H 0.250 0.750 38 H 0.103 0.897 39 H 0.064 0.936 40 H 0.103 0.897 41 H 0.064 0.936 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -7.266 -2.861 -14.387 16.370 hybrid contribution 0.698 1.132 -0.220 1.348 sum -6.569 -1.729 -14.607 16.109 Atomic orbital electron populations 1.22337 0.87307 1.01993 1.00659 1.62185 1.07740 1.14076 1.43100 1.22201 0.94606 0.89290 1.01191 1.22232 0.93834 0.98764 0.91821 1.59586 1.04860 1.14393 1.42990 1.18439 0.87973 1.03767 0.95791 1.21294 0.94878 1.00349 0.97922 1.20855 0.93703 1.03278 0.99144 1.20964 0.99796 0.96814 0.92889 1.21925 0.92559 1.02791 1.01711 1.17290 0.90358 0.92615 0.87353 1.54121 1.32569 1.69078 1.24168 1.00958 0.74950 0.74741 0.68938 1.93401 1.82715 1.38576 1.83476 1.93388 1.65356 1.78881 1.61350 1.30599 1.31992 1.47477 1.05590 0.87214 1.24752 0.97836 0.92772 0.93084 1.69891 1.38801 1.35870 1.02422 0.86144 0.80044 0.80078 0.79269 1.19133 1.19899 1.18388 1.22211 0.93705 0.88741 1.01738 1.22220 0.94635 0.98441 0.92053 0.91471 0.91446 0.95490 0.93662 0.90309 0.90058 0.93627 0.86632 0.86556 0.85772 0.81954 0.74984 0.89693 0.93588 0.89727 0.93575 0.90172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.60 60.07 0.58 0.80 16 2 N -0.55 -5.98 4.97 -242.76 -1.21 -7.18 16 3 C 0.06 0.60 5.62 -3.77 -0.02 0.58 16 4 C 0.06 0.74 5.31 -3.77 -0.02 0.72 16 5 N -0.50 -7.30 4.14 -170.75 -0.71 -8.01 16 6 C 0.04 0.63 4.75 -83.50 -0.40 0.23 16 7 C -0.12 -1.78 8.65 -39.41 -0.34 -2.12 16 8 C -0.15 -2.10 10.04 -39.56 -0.40 -2.49 16 9 C -0.09 -1.36 10.04 -39.56 -0.40 -1.76 16 10 C -0.17 -3.28 8.91 -39.41 -0.35 -3.63 16 11 C 0.22 4.37 6.23 -83.50 -0.52 3.85 16 12 N -1.06 -22.26 5.66 32.54 0.18 -22.08 16 13 S 2.70 71.69 4.63 -107.50 -0.50 71.19 16 14 O -0.99 -28.91 17.43 -57.17 -1.00 -29.91 16 15 O -1.00 -29.27 18.02 -57.17 -1.03 -30.30 16 16 C -1.02 -27.15 7.57 30.60 0.23 -26.92 16 17 H 0.11 2.63 6.92 -52.49 -0.36 2.27 16 18 C 0.13 3.63 5.46 -17.82 -0.10 3.53 16 19 N -0.84 -24.14 13.19 55.43 0.73 -23.40 16 20 Si 0.92 19.87 29.54 -169.99 -5.02 14.85 16 21 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 22 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 23 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 24 C 0.06 0.85 5.36 -3.77 -0.02 0.83 16 25 C 0.05 0.64 5.62 -3.77 -0.02 0.62 16 26 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.07 0.53 8.13 -51.92 -0.42 0.11 16 28 H 0.03 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.08 0.97 8.13 -51.93 -0.42 0.55 16 32 H 0.05 0.54 7.23 -51.93 -0.38 0.16 16 33 H 0.12 1.43 7.06 -52.49 -0.37 1.06 16 34 H 0.12 1.29 8.06 -52.49 -0.42 0.86 16 35 H 0.12 1.66 8.06 -52.49 -0.42 1.23 16 36 H 0.16 3.47 4.49 -52.49 -0.24 3.23 16 37 H 0.42 7.87 8.59 -34.47 -0.30 7.57 16 38 H 0.29 7.53 8.31 -40.82 -0.34 7.19 16 39 H 0.05 0.59 7.46 -51.93 -0.39 0.20 16 40 H 0.08 1.25 8.13 -51.94 -0.42 0.83 16 41 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.08 0.81 8.13 -51.93 -0.42 0.39 16 LS Contribution 351.46 15.07 5.30 5.30 Total: -1.00 -33.76 351.46 -10.83 -44.60 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: -5.81 Total: 10.71 kcal Atomic # 6 Polarization: -23.99 SS G_CDS: -1.77 Total: -25.76 kcal Atomic # 7 Polarization: -59.67 SS G_CDS: -1.00 Total: -60.67 kcal Atomic # 8 Polarization: -58.18 SS G_CDS: -2.03 Total: -60.21 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -5.02 Total: 14.85 kcal Atomic # 16 Polarization: 71.69 SS G_CDS: -0.50 Total: 71.19 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -33.76 -10.83 -44.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192972397.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.816 kcal (2) G-P(sol) polarization free energy of solvation -33.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds