Wall clock time and date at job start Fri Apr 10 2020 14:48:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47183 * 2 1 4 4 N 1.46899 * 109.47044 * 179.97438 * 3 2 1 5 5 C 1.46847 * 110.99862 * 170.00059 * 4 3 2 6 6 C 1.53044 * 109.51335 * 174.15436 * 5 4 3 7 7 C 1.53119 * 109.27589 * 59.18419 * 6 5 4 8 8 N 1.46498 * 109.51687 * 182.44060 * 7 6 5 9 9 C 1.46497 * 120.00357 * 60.00230 * 8 7 6 10 10 C 1.34781 * 120.00050 * 239.99922 * 8 7 6 11 11 O 1.21595 * 119.99708 * 359.97438 * 10 8 7 12 12 N 1.34772 * 120.00469 * 180.02562 * 10 8 7 13 13 C 1.46502 * 120.00296 * 179.97438 * 12 10 8 14 14 C 1.50698 * 109.47072 * 179.97438 * 13 12 10 15 15 O 1.21298 * 120.00275 * 0.02562 * 14 13 12 16 16 N 1.34782 * 119.99833 * 180.02562 * 14 13 12 17 17 C 1.37094 * 119.99823 * 180.02562 * 16 14 13 18 18 H 1.08001 * 120.00182 * 359.97438 * 17 16 14 19 19 C 1.38949 * 119.99810 * 180.02562 * 17 16 14 20 20 N 1.31409 * 120.00278 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99937 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47415 * 59.99587 * 21 19 17 23 23 H 1.48499 * 109.47390 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.47256 * 299.99926 * 21 19 17 25 25 C 1.53120 * 109.16202 * 302.34077 * 7 6 5 26 26 C 1.46847 * 110.99299 * 45.79217 * 4 3 2 27 27 H 1.09002 * 109.47064 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47300 * 300.00397 * 1 2 3 29 29 H 1.08997 * 109.47114 * 60.00499 * 1 2 3 30 30 H 1.08999 * 109.47300 * 239.99603 * 2 1 3 31 31 H 1.09007 * 109.47157 * 119.99556 * 2 1 3 32 32 H 1.09002 * 109.46622 * 59.99826 * 3 2 1 33 33 H 1.08997 * 109.46688 * 299.99762 * 3 2 1 34 34 H 1.09002 * 109.46448 * 54.14158 * 5 4 3 35 35 H 1.08994 * 109.45958 * 294.16523 * 5 4 3 36 36 H 1.09000 * 109.49745 * 179.12223 * 6 5 4 37 37 H 1.08996 * 109.50070 * 299.23917 * 6 5 4 38 38 H 1.08993 * 109.52284 * 62.25342 * 7 6 5 39 39 H 1.08994 * 109.47360 * 89.99716 * 9 8 7 40 40 H 1.09000 * 109.47076 * 210.00102 * 9 8 7 41 41 H 1.09000 * 109.46949 * 329.99648 * 9 8 7 42 42 H 0.97001 * 119.99698 * 0.02562 * 12 10 8 43 43 H 1.08999 * 109.47080 * 300.00536 * 13 12 10 44 44 H 1.08995 * 109.46702 * 60.00450 * 13 12 10 45 45 H 0.96994 * 120.00031 * 0.02562 * 16 14 13 46 46 H 0.97000 * 120.00474 * 180.02562 * 20 19 17 47 47 H 1.08996 * 109.50328 * 177.59853 * 25 7 6 48 48 H 1.08996 * 109.50004 * 297.72216 * 25 7 6 49 49 H 1.09005 * 109.46836 * 65.83946 * 26 4 3 50 50 H 1.08995 * 109.45748 * 305.85482 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4425 0.0006 5 6 4.0354 2.7926 -0.2374 6 6 5.5582 2.7816 -0.0857 7 6 6.1592 1.7947 -1.0903 8 7 7.6119 1.7367 -0.9102 9 6 8.1745 1.3179 0.3760 10 6 8.4310 2.0687 -1.9278 11 8 7.9641 2.4158 -2.9955 12 7 9.7674 2.0148 -1.7624 13 6 10.6577 2.3751 -2.8687 14 6 12.0913 2.2320 -2.4269 15 8 12.3446 1.8646 -1.2990 16 7 13.0921 2.5121 -3.2851 17 6 14.3963 2.3814 -2.8833 18 1 14.6218 2.0543 -1.8790 19 6 15.4281 2.6707 -3.7679 20 7 15.1537 3.0691 -4.9897 21 14 17.2052 2.4919 -3.2207 22 1 17.4605 1.0851 -2.8195 23 1 18.1076 2.8591 -4.3415 24 1 17.4603 3.3900 -2.0659 25 6 5.5583 0.4067 -0.8523 26 6 4.0355 0.4864 -0.9818 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8934 -0.5138 0.8901 32 1 1.6766 1.9563 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 3.6032 3.4837 0.4862 35 1 3.7731 3.1119 -1.2460 36 1 5.9501 3.7805 -0.2777 37 1 5.8208 2.4755 0.9269 38 1 5.9298 2.1221 -2.1043 39 1 8.3144 0.2369 0.3766 40 1 9.1355 1.8088 0.5293 41 1 7.4921 1.5963 1.1790 42 1 10.1399 1.7368 -0.9110 43 1 10.4703 1.7149 -3.7156 44 1 10.4703 3.4074 -3.1643 45 1 12.8896 2.8062 -4.1869 46 1 15.8740 3.2708 -5.6074 47 1 5.9504 -0.2913 -1.5919 48 1 5.8209 0.0632 0.1483 49 1 3.7733 0.8168 -1.9869 50 1 3.6034 -0.4974 -0.7986 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358271472.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:48:02 Heat of formation + Delta-G solvation = -63.679247 kcal Electronic energy + Delta-G solvation = -27925.185293 eV Core-core repulsion = 23987.292065 eV Total energy + Delta-G solvation = -3937.893228 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.211 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.43999 -39.19472 -38.16834 -36.20357 -34.51742 -34.14627 -33.56915 -31.49357 -31.29343 -31.02178 -27.65523 -27.15066 -25.92759 -24.49793 -23.89904 -22.98961 -21.10778 -20.16806 -19.62030 -19.35905 -18.31724 -17.75071 -16.80102 -16.01438 -15.81221 -15.63489 -15.46024 -15.19984 -14.77473 -14.48521 -14.42803 -14.21731 -13.96379 -13.75230 -13.67774 -13.36556 -13.12923 -13.03217 -12.64262 -12.56376 -12.37856 -12.02234 -11.92882 -11.90701 -11.64442 -11.61630 -11.42349 -11.26459 -11.13078 -11.09499 -10.73579 -10.55967 -10.49911 -10.30262 -9.90903 -9.61383 -8.88016 -8.63023 -8.60841 -8.41447 -8.08556 -6.49961 -3.92057 2.72640 3.14619 3.22326 3.26202 3.39046 3.54103 3.76747 4.04145 4.20463 4.43293 4.52508 4.60988 4.71694 4.80396 4.90722 4.91139 4.95575 5.03679 5.12455 5.17070 5.18684 5.25738 5.28745 5.33042 5.40599 5.42535 5.46495 5.56446 5.62691 5.67286 5.73013 5.77469 5.81683 5.85461 5.92191 5.97434 6.03253 6.09783 6.12890 6.53066 6.76188 6.77709 6.79066 7.09473 7.46981 7.93621 8.19177 8.46809 8.80885 9.05883 9.41015 9.89038 10.66831 Molecular weight = 326.21amu Principal moments of inertia in cm(-1) A = 0.044493 B = 0.001821 C = 0.001804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.158630 B =15370.286818 C =15515.601933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.130 4.130 3 C 0.055 3.945 4 N -0.539 5.539 5 C 0.060 3.940 6 C -0.126 4.126 7 C 0.158 3.842 8 N -0.629 5.629 9 C 0.076 3.924 10 C 0.706 3.294 11 O -0.599 6.599 12 N -0.724 5.724 13 C 0.127 3.873 14 C 0.429 3.571 15 O -0.598 6.598 16 N -0.549 5.549 17 C -0.306 4.306 18 H 0.105 0.895 19 C 0.026 3.974 20 N -0.895 5.895 21 Si 0.934 3.066 22 H -0.273 1.273 23 H -0.283 1.283 24 H -0.273 1.273 25 C -0.125 4.125 26 C 0.053 3.947 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.052 0.948 30 H 0.066 0.934 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.033 0.967 34 H 0.077 0.923 35 H 0.036 0.964 36 H 0.072 0.928 37 H 0.075 0.925 38 H 0.099 0.901 39 H 0.055 0.945 40 H 0.071 0.929 41 H 0.074 0.926 42 H 0.407 0.593 43 H 0.081 0.919 44 H 0.081 0.919 45 H 0.396 0.604 46 H 0.275 0.725 47 H 0.071 0.929 48 H 0.074 0.926 49 H 0.035 0.965 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.609 -3.742 9.361 27.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.167 4.167 3 C -0.073 4.073 4 N -0.264 5.264 5 C -0.068 4.068 6 C -0.165 4.165 7 C 0.054 3.946 8 N -0.366 5.366 9 C -0.067 4.067 10 C 0.407 3.593 11 O -0.478 6.478 12 N -0.382 5.382 13 C -0.001 4.001 14 C 0.215 3.785 15 O -0.485 6.485 16 N -0.184 5.184 17 C -0.435 4.435 18 H 0.123 0.877 19 C -0.177 4.177 20 N -0.535 5.535 21 Si 0.761 3.239 22 H -0.198 1.198 23 H -0.209 1.209 24 H -0.198 1.198 25 C -0.164 4.164 26 C -0.076 4.076 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.084 0.916 31 H 0.090 0.910 32 H 0.093 0.907 33 H 0.051 0.949 34 H 0.095 0.905 35 H 0.054 0.946 36 H 0.090 0.910 37 H 0.094 0.906 38 H 0.117 0.883 39 H 0.073 0.927 40 H 0.090 0.910 41 H 0.093 0.907 42 H 0.247 0.753 43 H 0.099 0.901 44 H 0.099 0.901 45 H 0.230 0.770 46 H 0.084 0.916 47 H 0.089 0.911 48 H 0.093 0.907 49 H 0.053 0.947 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -25.411 -3.814 9.607 27.433 hybrid contribution 0.777 0.267 -0.719 1.092 sum -24.633 -3.547 8.888 26.427 Atomic orbital electron populations 1.21737 0.95536 1.01832 1.01818 1.21708 0.95744 0.96496 1.02773 1.22158 0.87067 0.97204 1.00821 1.62042 1.07155 1.07236 1.50007 1.22033 0.94975 0.89875 0.99957 1.21966 0.94169 0.99885 1.00460 1.20932 0.77914 0.94945 1.00855 1.46967 1.05565 1.71809 1.12252 1.21723 0.99478 1.00097 0.85401 1.15806 0.81285 0.78496 0.83669 1.90880 1.75605 1.55476 1.25829 1.44940 1.03607 1.72173 1.17511 1.20785 0.88547 1.01610 0.89173 1.19767 0.86243 0.85629 0.86908 1.90485 1.84057 1.53481 1.20501 1.41776 1.05420 1.57460 1.13698 1.19681 0.80654 1.43228 0.99966 0.87740 1.25319 1.00715 0.96604 0.95037 1.69606 1.34202 1.44565 1.05099 0.85870 0.81028 0.79009 0.78030 1.19799 1.20867 1.19805 1.21964 0.94240 0.97215 1.02979 1.22183 0.94879 0.97100 0.93401 0.92512 0.92617 0.92843 0.91584 0.91025 0.90693 0.94899 0.90465 0.94568 0.90968 0.90636 0.88297 0.92661 0.91033 0.90728 0.75344 0.90059 0.90079 0.77016 0.91554 0.91059 0.90716 0.94682 0.89764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.76 9.91 37.16 0.37 -0.39 16 2 C -0.13 -0.77 5.18 -26.73 -0.14 -0.91 16 3 C 0.06 0.38 5.27 -3.82 -0.02 0.35 16 4 N -0.54 -4.40 4.81 -234.66 -1.13 -5.53 16 5 C 0.06 0.50 5.43 -3.83 -0.02 0.48 16 6 C -0.13 -1.19 5.40 -26.65 -0.14 -1.33 16 7 C 0.16 1.79 2.59 -67.81 -0.18 1.62 16 8 N -0.63 -8.23 2.77 -179.54 -0.50 -8.73 16 9 C 0.08 0.79 9.21 59.85 0.55 1.34 16 10 C 0.71 12.06 8.28 -86.92 -0.72 11.34 16 11 O -0.60 -12.03 15.67 5.28 0.08 -11.95 16 12 N -0.72 -12.73 5.39 -66.41 -0.36 -13.09 16 13 C 0.13 2.44 6.15 -5.19 -0.03 2.40 16 14 C 0.43 9.96 7.85 -10.98 -0.09 9.88 16 15 O -0.60 -15.39 15.24 5.54 0.08 -15.31 16 16 N -0.55 -13.72 5.29 -10.96 -0.06 -13.78 16 17 C -0.31 -8.35 9.68 -14.93 -0.14 -8.49 16 18 H 0.10 2.96 7.16 -52.49 -0.38 2.58 16 19 C 0.03 0.69 5.50 -17.47 -0.10 0.59 16 20 N -0.89 -23.95 13.05 55.50 0.72 -23.23 16 21 Si 0.93 20.58 29.55 -169.99 -5.02 15.56 16 22 H -0.27 -5.97 7.11 56.52 0.40 -5.56 16 23 H -0.28 -6.11 7.11 56.52 0.40 -5.70 16 24 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 25 C -0.13 -1.19 5.41 -26.65 -0.14 -1.34 16 26 C 0.05 0.44 4.85 -3.83 -0.02 0.42 16 27 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.07 0.40 6.21 -51.93 -0.32 0.08 16 31 H 0.07 0.45 8.14 -51.92 -0.42 0.03 16 32 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.03 0.23 8.08 -51.93 -0.42 -0.19 16 34 H 0.08 0.56 8.12 -51.93 -0.42 0.14 16 35 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.08 0.68 6.58 -51.93 -0.34 0.34 16 38 H 0.10 1.36 6.90 -51.93 -0.36 1.00 16 39 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.07 0.79 6.36 -51.93 -0.33 0.46 16 41 H 0.07 0.62 6.39 -51.93 -0.33 0.29 16 42 H 0.41 6.99 5.17 -40.82 -0.21 6.78 16 43 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 44 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 45 H 0.40 9.54 7.90 -40.82 -0.32 9.21 16 46 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 47 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 48 H 0.07 0.69 7.59 -51.93 -0.39 0.29 16 49 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 50 H 0.08 0.62 5.81 -51.93 -0.30 0.32 16 LS Contribution 392.10 15.07 5.91 5.91 Total: -1.00 -31.37 392.10 -9.42 -40.79 By element: Atomic # 1 Polarization: 21.72 SS G_CDS: -8.34 Total: 13.38 kcal Atomic # 6 Polarization: 16.79 SS G_CDS: -0.82 Total: 15.97 kcal Atomic # 7 Polarization: -63.04 SS G_CDS: -1.32 Total: -64.35 kcal Atomic # 8 Polarization: -27.42 SS G_CDS: 0.17 Total: -27.25 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -31.37 -9.42 -40.79 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358271472.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.889 kcal (2) G-P(sol) polarization free energy of solvation -31.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds